Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007872 Daucus carota HOM05D007799 ORTHO05D009854 2.0e-149 532.3 259 100.0
DCAR_003890 Daucus carota HOM05D007799 ORTHO05D009854 2.3e-84 316.2 253 59.7
Peaxi162Scf00045g02414 Petunia axillaris HOM05D007799 ORTHO05D009854 3.7e-58 229.2 252 48.8
Oeu032721.1 Olea europaea HOM05D007799 ORTHO05D009854 1.4e-57 227.3 234 47.9
Rhsim13G0117700 Rhododendron simsii HOM05D007799 ORTHO05D009854 2.4e-57 226.5 235 47.7
CSS0035706 Camellia sinensis var. sinensis HOM05D007799 ORTHO05D009854 2.0e-56 223.4 237 47.3
Manes.15G125000 Manihot esculenta HOM05D007799 ORTHO05D009854 2.2e-55 219.9 248 46.8
Oeu031191.1 Olea europaea HOM05D007799 ORTHO05D009854 3.8e-55 219.2 229 48.0
RcHm_v2.0_Chr5g0014941 Rosa chinensis HOM05D007799 ORTHO05D009854 1.1e-54 217.6 260 44.2
PGSC0003DMG400002292 Solanum tuberosum HOM05D007799 ORTHO05D009854 1.1e-54 217.6 251 45.8
CSS0034958 Camellia sinensis var. sinensis HOM05D007799 ORTHO05D009854 1.4e-54 217.2 237 45.6
Cfa000897 Carpinus fangiana HOM05D007799 ORTHO05D009854 1.4e-54 217.2 246 46.3
COL.COLO4_31009 Corchorus olitorius HOM05D007799 ORTHO05D009854 3.2e-54 216.1 237 47.7
Duzib192G0648 Durio zibethinus HOM05D007799 ORTHO05D009854 5.5e-54 215.3 258 46.1
Prupe.4G085700 Prunus persica HOM05D007799 ORTHO05D009854 1.2e-53 214.2 259 43.6
Nitab4.5_0005655g0010 Nicotiana tabacum HOM05D007799 ORTHO05D009854 2.1e-53 213.4 252 45.2
Thecc.06G144300 Theobroma cacao HOM05D007799 ORTHO05D009854 3.6e-53 212.6 253 46.2
MD10G1258100 Malus domestica HOM05D007799 ORTHO05D009854 1.4e-52 210.7 254 42.9
Duzib235G1165 Durio zibethinus HOM05D007799 ORTHO05D009854 3.0e-52 209.5 254 45.3
FAN11G0145 Fragaria x ananassa HOM05D007799 ORTHO05D009854 6.7e-52 208.4 260 42.3
Lj6g0006831 Lotus japonicus HOM05D007799 ORTHO05D009854 6.7e-52 208.4 258 43.0
FvH4_3g05030 Fragaria vesca HOM05D007799 ORTHO05D009854 8.8e-52 208.0 260 41.9
Cc00_g02020 Coffea canephora HOM05D007799 ORTHO05D009854 1.1e-51 207.6 237 46.4
Lsat_1_v5_gn_7_27461 Lactuca sativa HOM05D007799 ORTHO05D009854 1.1e-51 207.6 250 44.0
FAN25G3832 Fragaria x ananassa HOM05D007799 ORTHO05D009854 3.3e-51 206.1 260 41.9
Glyma.13G221700 Glycine max HOM05D007799 ORTHO05D009854 5.7e-51 205.3 258 43.4
FAN16G3425 Fragaria x ananassa HOM05D007799 ORTHO05D009854 7.4e-51 204.9 260 41.2
FAN21G3556 Fragaria x ananassa HOM05D007799 ORTHO05D009854 9.7e-51 204.5 260 41.5
QL05p055084 Quercus lobata HOM05D007799 ORTHO05D009854 1.7e-50 203.8 238 44.5
MD05G1279400 Malus domestica HOM05D007799 ORTHO05D009854 2.2e-50 203.4 249 44.2
Eucgr.D00266 Eucalyptus grandis HOM05D007799 ORTHO05D009854 2.8e-50 203.0 236 43.6
CANSAT35G1982 Cannabis sativa HOM05D007799 ORTHO05D009854 8.2e-50 201.4 234 45.3
HanXRQChr15g0482011 Helianthus annuus HOM05D007799 ORTHO05D009854 1.1e-49 201.1 255 40.0
SalBow8G4130 Salvia bowleyana HOM05D007799 ORTHO05D009854 1.1e-49 201.1 238 42.9
HanXRQChr04g0116571 Helianthus annuus HOM05D007799 ORTHO05D009854 3.1e-49 199.5 247 41.3
Atru.chr10.1081 Acer truncatum HOM05D007799 ORTHO05D009854 4.1e-49 199.1 229 46.7
Migut.K01168 Erythranthe guttata HOM05D007799 ORTHO05D009854 6.9e-49 198.4 220 45.9
Glyma.15G090500 Glycine max HOM05D007799 ORTHO05D009854 6.9e-49 198.4 258 42.6
Medtr2g018670 Medicago truncatula HOM05D007799 ORTHO05D009854 6.9e-49 198.4 238 43.3
Ciclev10016395m.g Citrus clementina HOM05D007799 ORTHO05D009854 2.0e-48 196.8 256 41.4
Lalb_Chr20g0117681 Lupinus albus HOM05D007799 ORTHO05D009854 4.5e-48 195.7 252 43.3
arahy.Tifrunner.gnm1.ann1.NZ6SRJ Arachis hypogaea HOM05D007799 ORTHO05D009854 5.9e-48 195.3 259 44.0
PGR083G2472 Punica granatum HOM05D007799 ORTHO05D009854 7.7e-48 194.9 233 42.9
arahy.Tifrunner.gnm1.ann1.80ML42 Arachis hypogaea HOM05D007799 ORTHO05D009854 1.3e-47 194.1 259 43.6
CiPaw.09G119600 Carya illinoinensis HOM05D007799 ORTHO05D009854 1.3e-47 194.1 241 44.4
CiPaw.10G088800 Carya illinoinensis HOM05D007799 ORTHO05D009854 1.3e-47 194.1 233 43.8
Potri.011G081701 Populus trichocarpa HOM05D007799 ORTHO05D009854 1.7e-47 193.7 231 44.6
VMungo0540G2150 Vigna mungo HOM05D007799 ORTHO05D009854 5.0e-47 192.2 259 41.7
Gorai.010G237400 Gossypium raimondii HOM05D007799 ORTHO05D009854 6.5e-47 191.8 228 45.2
Psat1g192080 Pisum sativum HOM05D007799 ORTHO05D009854 8.5e-47 191.4 241 42.7
Lalb_Chr15g0086631 Lupinus albus HOM05D007799 ORTHO05D009854 2.5e-46 189.9 247 43.3
Ca_00511_v3 Cicer arietinum L. HOM05D007799 ORTHO05D009854 5.5e-46 188.7 239 42.3
Gohir.A06G196000 Gossypium hirsutum HOM05D007799 ORTHO05D009854 1.2e-45 187.6 228 43.9
MBI02_g12199_MAGBIO Magnolia biondii HOM05D007799 ORTHO05D009854 1.6e-45 187.2 245 40.8
ECA236G2997 Erigeron canadensis HOM05D007799 ORTHO05D009854 2.1e-45 186.8 234 41.0
MBI18_g11218_MAGBIO Magnolia biondii HOM05D007799 ORTHO05D009854 4.7e-45 185.7 247 40.5
Gohir.D06G203500 Gossypium hirsutum HOM05D007799 ORTHO05D009854 1.0e-44 184.5 223 44.4
TPR.G26257 Trifolium pratense HOM05D007799 ORTHO05D009854 1.0e-44 184.5 238 42.9
GSVIVG01021549001 Vitis vinifera HOM05D007799 ORTHO05D009854 1.8e-44 183.7 240 42.5
vmacro03431 Vaccinium macrocarpon HOM05D007799 ORTHO05D009854 2.3e-44 183.3 256 42.6
VMungo0251G0945 Vigna mungo HOM05D007799 ORTHO05D009854 1.5e-43 180.6 252 39.7
Glyma.05G143400 Glycine max HOM05D007799 ORTHO05D009854 4.4e-43 179.1 263 37.3
Actinidia32344 Actinidia chinensis HOM05D007799 ORTHO05D009854 2.2e-42 176.8 207 44.0
Glyma.08G099800 Glycine max HOM05D007799 ORTHO05D009854 2.2e-42 176.8 262 37.8
Medtr8g079475 Medicago truncatula HOM05D007799 ORTHO05D009854 8.2e-42 174.9 258 37.6
Phvul.002G177900 Phaseolus vulgaris HOM05D007799 ORTHO05D009854 1.4e-41 174.1 247 38.5
Nitab4.5_0000315g0030 Nicotiana tabacum HOM05D007799 ORTHO05D009854 1.5e-40 170.6 252 39.7
Haze_05684 Corylus avellana HOM05D007799 ORTHO05D009854 5.0e-39 165.6 237 40.5
TAR624G0778 Trochodendron aralioides HOM05D007799 ORTHO05D009854 2.1e-37 160.2 180 47.2
CsaV3_1G036880 Cucumis sativus L. HOM05D007799 ORTHO05D009854 2.7e-37 159.8 238 38.7
CDE12G0863 Ceratophyllum demersum HOM05D007799 ORTHO05D009854 3.6e-37 159.5 238 40.3
ClCG03G006490 Citrullus lanatus HOM05D007799 ORTHO05D009854 3.6e-37 159.5 252 38.1
Sed0012400 Sechium edule HOM05D007799 ORTHO05D009854 3.0e-36 156.4 230 40.9
HPP92_026553 Vanilla planifolia HOM05D007799 ORTHO05D009854 3.0e-36 156.4 234 35.0
arahy.Tifrunner.gnm1.ann1.W0WEAA Arachis hypogaea HOM05D007799 ORTHO05D009854 1.1e-35 154.5 259 36.3
arahy.Tifrunner.gnm1.ann1.GW4I6G Arachis hypogaea HOM05D002205 ORTHO05D004847 2.6e-35 153.3 259 36.3
Dinv32213 Davidia involucrata HOM05D007799 ORTHO05D009854 3.3e-35 152.9 182 44.0
Lalb_Chr13g0294011 Lupinus albus HOM05D007799 ORTHO05D009854 2.2e-34 150.2 232 35.8
Nn3g20329 Nelumbo nucifera HOM05D007799 ORTHO05D009854 2.4e-33 146.7 260 33.5
HPP92_028169 Vanilla planifolia HOM05D007799 ORTHO05D009854 5.9e-32 142.1 244 30.7
Phvul.006G168136 Phaseolus vulgaris HOM05D007799 ORTHO05D009854 3.2e-30 136.3 183 42.6
ATR1098G006 Amborella trichopoda HOM05D007799 ORTHO05D009854 1.6e-29 134.0 243 33.3
TPR.G9572 Trifolium pratense HOM05D007799 ORTHO05D009854 5.7e-27 125.6 174 40.2
Sopen08g008720 Solanum pennellii HOM05D007799 ORTHO05D009854 3.1e-25 119.8 169 40.8
Lj1C1169G11 Lonicera japonica HOM05D002205 ORTHO05D004847 2.9e-23 113.2 96 52.1
Solyc08g023510.3 Solanum lycopersicum HOM05D007799 ORTHO05D009854 5.0e-23 112.5 162 40.1
MELO3C035703.2 Cucumis melo HOM05D007799 ORTHO05D009854 2.4e-17 93.6 164 35.4
TPR.G18987 Trifolium pratense HOM05D007799 ORTHO05D009854 5.5e-14 82.4 80 43.8
HPP92_026526 Vanilla planifolia HOM05D007799 ORTHO05D009854 1.1e-06 58.2 97 33.0


User provided reference genes

Program Settings