Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 4.2e-196 688.0 381 100.0
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 9.6e-148 527.3 412 70.1
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 5.3e-130 468.4 420 60.5
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.6e-129 466.1 411 59.6
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 1.0e-128 464.2 415 60.7
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 1.3e-128 463.8 408 62.7
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 1.3e-128 463.8 415 61.7
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.4e-127 460.3 420 59.5
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 1.6e-126 456.8 333 69.4
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 2.3e-125 453.0 409 61.1
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 1.9e-124 449.9 346 66.2
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 4.3e-124 448.7 345 66.7
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 5.7e-124 448.4 348 65.2
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 1.3e-123 447.2 360 65.0
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 1.3e-123 447.2 360 65.0
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 1.3e-123 447.2 414 59.2
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 2.8e-123 446.0 410 59.8
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 1.1e-122 444.1 410 60.7
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 1.4e-122 443.7 409 59.9
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 1.8e-122 443.4 409 59.7
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 1.8e-122 443.4 374 62.3
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 1.8e-122 443.4 351 65.8
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 5.3e-122 441.8 348 66.7
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 1.2e-121 440.7 350 64.6
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 1.5e-121 440.3 412 59.0
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 3.4e-121 439.1 409 59.7
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 5.9e-121 438.3 416 58.4
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 7.7e-121 438.0 350 65.4
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 7.7e-121 438.0 410 57.3
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 6.5e-120 434.9 382 60.5
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 2.5e-119 433.0 411 57.4
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 4.2e-119 432.2 342 64.9
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 4.2e-119 432.2 415 58.6
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 5.5e-119 431.8 411 59.1
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 5.5e-119 431.8 384 61.7
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 7.2e-119 431.4 349 63.9
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 9.4e-119 431.0 415 58.3
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 9.4e-119 431.0 348 62.9
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 1.2e-118 430.6 413 59.1
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 1.2e-118 430.6 418 58.4
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 1.2e-118 430.6 410 57.8
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 2.7e-118 429.5 391 60.4
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 3.6e-118 429.1 409 57.5
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 6.1e-118 428.3 349 62.5
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 1.4e-117 427.2 348 64.9
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 1.8e-117 426.8 415 58.8
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 3.0e-117 426.0 334 65.3
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 3.0e-117 426.0 415 57.6
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 3.0e-117 426.0 418 56.9
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 6.7e-117 424.9 355 60.8
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 6.7e-117 424.9 413 57.9
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.5e-116 422.9 408 57.8
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 3.3e-116 422.5 406 58.9
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 9.7e-116 421.0 411 56.7
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 1.3e-115 420.6 412 56.8
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.3e-115 420.6 408 57.4
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.7e-115 420.2 357 60.8
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 2.2e-115 419.9 409 57.7
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.8e-115 419.5 357 60.8
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.8e-115 418.7 357 60.8
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 1.1e-114 417.5 345 62.6
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 1.2e-113 414.1 316 68.7
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.0e-112 411.0 368 59.0
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 1.0e-112 411.0 362 59.1
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 1.3e-112 410.6 316 66.5
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 2.9e-112 409.5 426 54.0
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 6.5e-112 408.3 355 61.4
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.9e-111 406.8 339 61.9
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 5.5e-111 405.2 344 63.4
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 1.6e-110 403.7 414 55.3
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 6.1e-110 401.7 327 69.4
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 1.4e-109 400.6 352 65.6
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 3.0e-109 399.4 352 65.3
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 3.9e-109 399.1 423 58.9
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 3.9e-109 399.1 423 58.9
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 3.9e-109 399.1 408 54.7
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 5.1e-109 398.7 345 60.9
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 6.7e-109 398.3 357 57.7
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 6.7e-109 398.3 314 65.0
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 3.3e-108 396.0 416 56.2
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 4.4e-108 395.6 411 58.6
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 5.7e-108 395.2 351 63.0
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 9.7e-108 394.4 409 55.7
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 9.7e-108 394.4 350 60.3
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 9.7e-108 394.4 391 55.5
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 4.8e-107 392.1 379 60.4
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 6.3e-107 391.7 388 56.4
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 6.3e-107 391.7 391 55.0
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 1.1e-106 391.0 412 53.2
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 2.4e-106 389.8 336 65.2
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 1.2e-105 387.5 379 59.9
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 1.5e-105 387.1 410 53.4
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 2.6e-105 386.3 418 53.8
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 3.5e-105 386.0 410 52.4
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 1.0e-104 384.4 364 57.7
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.6e-102 377.1 439 54.9
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 1.4e-101 374.0 346 58.4
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 2.3e-101 373.2 415 53.3
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 7.4e-100 368.2 337 59.6
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.8e-98 363.6 377 55.2
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 2.6e-97 359.8 493 50.1
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 1.7e-96 357.1 511 45.2
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 6.5e-96 355.1 422 53.8
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 7.5e-92 341.7 345 54.5
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.8e-91 339.7 293 60.4
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 8.3e-91 338.2 284 60.6
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 3.4e-84 316.2 275 59.6
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 4.4e-84 315.8 335 54.0
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 9.8e-84 314.7 273 59.3
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 2.8e-83 313.2 455 43.5
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 6.3e-83 312.0 340 50.6
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 8.3e-83 311.6 319 56.4
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 9.1e-82 308.1 319 53.3
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.7e-81 306.6 349 51.0
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 1.2e-78 297.7 333 48.9
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 4.3e-71 272.7 342 44.4
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 9.2e-58 228.4 323 40.6
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 2.7e-57 226.9 285 49.5
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 1.7e-51 207.6 199 60.8
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 8.3e-51 205.3 351 35.9
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 3.2e-50 203.4 155 60.6
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 1.7e-48 197.6 330 37.9
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 1.7e-40 171.0 98 78.6
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 5.4e-34 149.4 144 61.1
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 9.3e-34 148.7 136 61.8
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 1.0e-32 145.2 156 47.4
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 1.7e-32 144.4 250 36.8
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-31 141.7 128 63.3
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 7.3e-31 139.0 175 47.4
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.8e-30 136.3 99 69.7
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 8.1e-30 135.6 115 63.5
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.4e-29 134.0 166 45.8
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 1.5e-28 131.3 169 45.6
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 2.0e-28 131.0 168 45.8
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 3.8e-27 126.7 159 45.3
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 8.4e-27 125.6 168 44.0
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.4e-26 124.0 152 46.7
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 7.1e-26 122.5 158 49.4
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 2.7e-25 120.6 141 56.0
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 3.0e-24 117.1 86 61.6
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 1.3e-22 111.7 73 74.0
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 3.7e-22 110.2 79 67.1
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 5.3e-21 106.3 83 56.6
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 7.1e-18 95.9 131 39.7
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.6e-17 94.7 63 74.6
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 2.1e-17 94.4 139 46.8
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 2.7e-17 94.0 96 47.9
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 3.9e-16 90.1 115 42.6
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 3.7e-14 83.6 129 33.3
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 4.1e-13 80.1 67 61.2
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 3.8e-11 73.6 125 41.6
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 1.8e-08 64.7 54 50.0
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 6.7e-08 62.8 42 59.5
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 9.7e-07 58.9 43 67.4
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 1.3e-06 58.5 38 76.3
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 1.3e-06 58.5 38 76.3
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 1.3e-06 58.5 38 76.3


User provided reference genes

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