Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 7.0e-95 350.9 216 100.0
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 5.8e-49 198.4 217 58.5
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 2.8e-27 126.3 216 49.1
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 4.8e-27 125.6 216 43.1
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 8.1e-27 124.8 217 50.2
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 1.4e-26 124.0 216 51.9
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 1.8e-26 123.6 130 56.2
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 1.8e-26 123.6 146 51.4
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 2.4e-26 123.2 216 50.9
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 2.4e-26 123.2 216 45.8
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 2.4e-26 123.2 154 52.6
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 3.1e-26 122.9 145 51.7
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 3.1e-26 122.9 221 44.3
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 4.0e-26 122.5 145 52.4
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 4.0e-26 122.5 149 51.7
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 4.0e-26 122.5 143 53.1
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 9.0e-26 121.3 216 48.1
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 9.0e-26 121.3 143 51.7
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 2.0e-25 120.2 139 54.0
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 2.0e-25 120.2 150 50.7
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 2.6e-25 119.8 139 52.5
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 3.4e-25 119.4 145 53.1
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 4.5e-25 119.0 218 44.5
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 5.8e-25 118.6 142 51.4
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 5.8e-25 118.6 130 56.2
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 5.8e-25 118.6 130 54.6
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 9.9e-25 117.9 145 53.1
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 1.3e-24 117.5 143 51.7
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 1.7e-24 117.1 215 48.4
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 2.2e-24 116.7 142 50.7
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.2e-24 116.7 146 52.7
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 2.2e-24 116.7 130 53.1
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 2.2e-24 116.7 215 51.6
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 2.9e-24 116.3 147 50.3
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 3.8e-24 115.9 147 49.0
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 4.9e-24 115.5 127 52.0
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 4.9e-24 115.5 145 51.0
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 4.9e-24 115.5 133 54.9
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 1.1e-23 114.4 219 43.4
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.9e-23 113.6 143 53.1
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 2.4e-23 113.2 146 54.8
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 3.2e-23 112.8 135 52.6
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 4.2e-23 112.5 215 44.2
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 5.5e-23 112.1 151 48.3
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 7.1e-23 111.7 147 51.7
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 7.1e-23 111.7 145 49.0
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 9.3e-23 111.3 143 52.4
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 2.1e-22 110.2 129 51.9
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 2.7e-22 109.8 131 53.4
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 3.5e-22 109.4 140 50.0
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 3.5e-22 109.4 223 44.4
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 4.6e-22 109.0 130 49.2
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 4.6e-22 109.0 132 53.0
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 6.0e-22 108.6 143 49.0
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 6.0e-22 108.6 215 40.5
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 6.0e-22 108.6 149 48.3
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 7.9e-22 108.2 149 45.6
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 7.9e-22 108.2 127 54.3
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 1.0e-21 107.8 147 48.3
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 1.3e-21 107.5 134 50.0
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 2.3e-21 106.7 142 45.1
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 2.3e-21 106.7 124 53.2
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 2.3e-21 106.7 218 46.8
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 3.0e-21 106.3 215 42.3
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 3.0e-21 106.3 143 49.7
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 3.9e-21 105.9 236 43.2
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 3.9e-21 105.9 217 41.5
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 3.9e-21 105.9 150 50.0
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 6.7e-21 105.1 145 47.6
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 6.7e-21 105.1 152 46.1
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 6.7e-21 105.1 215 47.0
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 6.7e-21 105.1 101 61.4
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 6.7e-21 105.1 215 44.7
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 6.7e-21 105.1 149 46.3
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 8.7e-21 104.8 136 50.0
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 8.7e-21 104.8 142 47.2
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 1.5e-20 104.0 144 47.9
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 1.9e-20 103.6 138 50.0
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 1.9e-20 103.6 138 50.0
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 1.9e-20 103.6 138 50.0
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.9e-20 103.6 145 46.9
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 3.3e-20 102.8 137 49.6
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 3.3e-20 102.8 147 44.9
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 4.3e-20 102.4 147 46.3
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 4.3e-20 102.4 141 46.1
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 4.3e-20 102.4 147 50.3
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 7.4e-20 101.7 141 47.5
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 9.6e-20 101.3 215 47.4
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.3e-19 100.9 145 46.2
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 1.3e-19 100.9 106 56.6
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.3e-19 100.9 218 49.1
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 1.6e-19 100.5 143 48.3
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 1.6e-19 100.5 141 51.1
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 1.6e-19 100.5 145 45.5
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 1.6e-19 100.5 148 45.3
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 2.1e-19 100.1 146 44.5
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 2.1e-19 100.1 143 47.6
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 2.8e-19 99.8 132 48.5
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 2.8e-19 99.8 126 51.6
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 3.7e-19 99.4 148 44.6
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 4.8e-19 99.0 125 51.2
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 6.2e-19 98.6 106 55.7
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 6.2e-19 98.6 131 48.9
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 1.4e-18 97.4 104 56.7
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 1.4e-18 97.4 104 56.7
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 1.4e-18 97.4 157 46.5
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 1.4e-18 97.4 216 40.7
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 1.8e-18 97.1 138 50.7
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 2.4e-18 96.7 126 50.0
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 2.4e-18 96.7 126 50.0
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 2.4e-18 96.7 143 45.5
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 2.4e-18 96.7 154 39.6
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 3.1e-18 96.3 140 48.6
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 3.1e-18 96.3 121 47.9
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 6.9e-18 95.1 120 50.8
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 1.2e-17 94.4 145 45.5
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 1.2e-17 94.4 132 47.7
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 2.0e-17 93.6 127 44.9
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 2.6e-17 93.2 101 54.5
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 3.4e-17 92.8 196 45.4
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 4.5e-17 92.4 130 45.4
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 1.0e-16 91.3 130 46.9
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 2.9e-16 89.7 88 58.0
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 8.4e-16 88.2 186 42.5
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 1.4e-15 87.4 147 44.9
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 1.4e-15 87.4 147 44.9
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 2.5e-15 86.7 147 44.9
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 9.3e-15 84.7 160 47.5
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.6e-14 84.0 94 56.4
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.6e-14 84.0 80 58.8
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 3.5e-14 82.8 71 63.4
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 7.9e-14 81.6 148 39.2
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 1.0e-13 81.3 72 58.3
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 1.9e-12 77.0 141 41.8
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 4.3e-12 75.9 61 63.9
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 4.3e-12 75.9 158 41.8
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 7.4e-12 75.1 204 45.1
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 9.6e-12 74.7 148 39.9
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 3.7e-11 72.8 123 43.1
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 4.8e-11 72.4 168 38.1
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 6.3e-11 72.0 134 54.5
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 2.4e-10 70.1 161 38.5
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 5.9e-09 65.5 83 51.8
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.4e-07 60.8 61 55.7
Cre03.g168500 Chlamydomonas reinhardtii HOM05D004771 ORTHO05D005565 1.4e-07 60.8 83 42.2
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 4.2e-07 59.3 60 58.3
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 7.2e-07 58.5 60 51.7
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 9.3e-07 58.2 103 37.9
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 1.2e-06 57.8 91 47.3
DCAR_016241 Daucus carota HOM05D031601 ORTHO05D005565 1.6e-06 57.4 63 58.7
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.6e-06 57.4 43 65.1


User provided reference genes

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