Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 3754.1 1909 100.0
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2387.1 1938 65.1
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2375.1 1944 65.0
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2260.7 1866 64.3
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2199.1 1947 60.5
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 2178.3 1941 60.7
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2158.6 1976 60.0
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2130.9 1947 59.0
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2129.4 1961 59.2
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2127.8 1948 58.6
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2111.6 2014 57.6
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2100.9 2013 57.0
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 2095.9 1950 58.5
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2082.0 1943 58.2
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2081.6 1943 57.8
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2074.7 1948 58.0
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2073.9 1954 57.7
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 2072.4 1943 58.0
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2066.6 1954 57.1
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2059.6 1946 57.5
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 2050.0 1937 58.0
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2048.1 1951 57.9
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2038.5 1950 57.0
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2031.5 1955 57.4
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2028.4 1959 56.5
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2020.0 1948 56.8
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 1998.0 1937 56.6
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 1992.6 1950 55.8
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 1988.4 1943 55.5
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1988.0 1943 56.6
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 1986.8 1941 56.8
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 1983.0 1940 55.5
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 1982.6 1943 56.5
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 1979.5 1952 55.9
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 1978.4 1943 55.6
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1977.6 1947 55.4
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1976.1 1948 55.3
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 1974.9 1955 55.2
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 1973.4 1933 56.6
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 1970.7 1949 55.5
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 1966.0 1940 55.3
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 1963.7 1946 54.7
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 1961.8 1925 56.2
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 1954.9 1941 55.2
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 1954.5 1923 56.0
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1944.5 1927 55.1
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1943.7 1944 55.4
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 1931.4 1961 54.4
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 1919.1 1926 55.9
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 1918.7 1939 55.1
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 1916.4 1948 54.6
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 1916.0 1975 54.2
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1913.7 2011 53.4
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1909.8 2009 53.6
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 1904.0 2022 53.2
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 1897.1 1991 53.0
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1892.1 2073 51.5
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1887.8 1946 54.3
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1884.4 1955 53.8
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1867.0 1930 54.4
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1860.9 1964 53.2
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 1840.9 1936 52.9
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 1828.9 1943 53.2
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1827.8 1912 53.0
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1818.1 2087 49.9
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1815.0 1818 55.4
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 1796.2 1937 52.1
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 1792.7 1934 52.5
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 1789.6 1934 52.6
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 1783.1 1929 52.5
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1778.8 1929 52.2
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 1778.1 1940 52.3
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 1777.3 1932 52.0
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1770.4 1931 51.9
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1749.2 1826 53.7
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1743.4 1961 51.1
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1741.1 1931 51.5
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1718.0 1968 50.7
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1708.0 1954 50.2
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1684.8 1944 50.0
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1667.9 1935 50.5
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1640.6 2109 46.2
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1538.1 1583 54.7
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1487.2 1935 46.3
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1449.9 1650 50.5
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1371.3 1833 45.4
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1356.3 1081 65.8
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1326.2 1375 54.8
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1146.3 2177 36.9
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1090.5 1976 36.7
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1078.5 2195 34.4
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 1.7e-285 987.3 2096 33.9
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 3.0e-282 976.5 845 62.4
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 1.3e-229 801.6 836 54.8
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 3.9e-221 773.5 846 53.1
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 6.4e-216 756.1 1416 37.6
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 4.3e-212 743.4 2140 29.8
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 3.6e-211 740.3 681 58.7
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 2.6e-209 734.2 1161 39.7
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 3.4e-169 600.9 795 46.4
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 3.2e-151 541.2 778 43.7
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 2.0e-145 521.9 359 72.4
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 2.6e-145 521.5 779 43.1
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 3.8e-144 517.7 358 72.3
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 1.7e-83 316.2 199 76.9
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 9.3e-74 283.9 212 67.9
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 1.6e-62 246.5 251 48.6
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 4.0e-61 241.9 491 36.5
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 3.9e-56 225.3 307 47.2
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 5.1e-56 224.9 257 47.9
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 3.4e-52 212.2 241 49.4
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 2.2e-51 209.5 124 82.3
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 2.5e-39 169.5 243 42.8
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 3.7e-30 139.0 203 41.4
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 1.8e-29 136.7 123 56.9
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 1.5e-28 133.7 80 82.5
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 7.7e-28 131.3 138 48.6
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 8.5e-19 101.3 91 50.5
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 1.2e-17 97.4 122 48.4
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 2.0e-15 90.1 68 63.2
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 1.4e-13 84.0 74 60.8
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 2.4e-13 83.2 440 24.1
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 3.5e-12 79.3 61 62.3
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 2.2e-11 76.6 80 50.0
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 2.1e-09 70.1 66 47.0
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 1.4e-08 67.4 71 54.9


User provided reference genes

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