Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 2.3e-169 599.0 332 100.0
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 2.2e-92 343.2 336 61.0
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 2.7e-82 309.7 357 54.3
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 5.7e-80 302.0 334 55.1
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 1.7e-79 300.4 328 55.5
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 2.4e-78 296.6 351 54.4
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 4.1e-78 295.8 348 52.3
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 2.7e-77 293.1 343 53.6
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 1.7e-76 290.4 340 53.8
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 2.2e-76 290.0 353 53.5
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 2.9e-76 289.7 341 53.7
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 6.5e-76 288.5 349 52.4
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 8.5e-76 288.1 345 55.1
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 1.1e-75 287.7 333 56.5
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 1.9e-75 287.0 342 53.2
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 2.5e-75 286.6 358 51.7
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.5e-75 286.6 358 51.7
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 3.2e-75 286.2 345 54.2
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 3.2e-75 286.2 345 54.2
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 4.2e-75 285.8 343 52.5
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 4.2e-75 285.8 360 51.7
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 7.2e-75 285.0 341 53.4
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 2.1e-74 283.5 358 51.4
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 6.1e-74 282.0 331 54.1
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 6.1e-74 282.0 331 54.1
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 6.1e-74 282.0 352 51.7
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.8e-73 280.4 349 51.9
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.8e-73 280.4 353 51.3
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.8e-73 280.4 345 50.4
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 5.2e-73 278.9 348 53.4
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 1.2e-72 277.7 358 50.6
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 1.5e-72 277.3 319 54.5
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 1.5e-72 277.3 360 51.4
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 2.6e-72 276.6 357 51.8
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 4.4e-72 275.8 352 50.0
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 4.4e-72 275.8 352 49.7
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 5.7e-72 275.4 349 51.6
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 5.7e-72 275.4 358 50.3
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 5.7e-72 275.4 358 50.3
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 2.2e-71 273.5 342 51.2
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 4.8e-71 272.3 358 49.7
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 4.8e-71 272.3 343 51.0
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 8.3e-71 271.6 350 50.9
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 8.3e-71 271.6 349 52.1
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 8.3e-71 271.6 350 52.9
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 8.3e-71 271.6 350 52.9
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 8.3e-71 271.6 358 50.0
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 3.1e-70 269.6 351 51.6
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 5.4e-70 268.9 355 50.4
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 7.0e-70 268.5 354 50.6
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 9.1e-70 268.1 356 49.4
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 9.1e-70 268.1 362 51.4
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 1.6e-69 267.3 345 49.9
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 2.7e-69 266.5 357 50.4
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 2.7e-69 266.5 357 50.4
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 4.5e-69 265.8 347 49.3
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 5.9e-69 265.4 326 50.3
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 2.9e-68 263.1 348 49.1
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 3.8e-68 262.7 353 52.7
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 8.6e-68 261.5 356 48.3
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 8.6e-68 261.5 356 48.3
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 2.5e-67 260.0 362 50.0
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 4.2e-67 259.2 348 49.4
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 1.6e-66 257.3 362 50.6
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.8e-65 253.8 385 45.2
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 2.3e-65 253.4 334 50.9
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 2.3e-65 253.4 331 48.6
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 3.4e-64 249.6 367 49.3
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 4.4e-64 249.2 331 50.5
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 4.4e-64 249.2 346 50.6
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 5.7e-64 248.8 373 47.7
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 1.3e-63 247.7 356 46.6
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 1.7e-63 247.3 340 47.4
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 2.2e-63 246.9 330 47.6
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 1.4e-62 244.2 337 48.7
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 1.8e-62 243.8 356 46.1
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 3.1e-62 243.0 355 45.4
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 4.1e-62 242.7 328 48.8
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 5.4e-62 242.3 337 46.6
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 7.0e-62 241.9 340 49.1
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 7.0e-62 241.9 342 48.2
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 1.6e-61 240.7 372 45.2
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 2.7e-61 240.0 330 48.2
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 3.5e-61 239.6 360 44.7
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 1.3e-60 237.7 348 47.4
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 1.3e-60 237.7 329 48.3
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 2.9e-60 236.5 345 47.0
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 2.9e-60 236.5 348 44.8
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 1.1e-59 234.6 340 47.6
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 4.3e-59 232.6 362 44.8
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 5.6e-59 232.3 340 45.0
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 2.1e-58 230.3 370 45.7
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 1.0e-57 228.0 337 45.7
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 1.8e-57 227.3 335 48.1
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 2.3e-57 226.9 332 46.1
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 3.0e-57 226.5 349 47.0
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 3.0e-57 226.5 343 45.8
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 1.2e-56 224.6 364 44.2
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 3.4e-56 223.0 365 44.1
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 4.9e-55 219.2 288 49.7
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 8.3e-55 218.4 345 45.5
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 1.4e-54 217.6 341 44.3
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.9e-54 217.2 333 46.2
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 3.5e-53 213.0 321 46.4
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 3.0e-52 209.9 369 40.7
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 8.6e-52 208.4 348 42.8
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 7.3e-51 205.3 333 45.9
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 7.3e-51 205.3 333 45.9
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 8.0e-50 201.8 363 41.6
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 2.6e-48 196.8 336 42.6
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 5.8e-48 195.7 269 46.8
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 4.9e-47 192.6 264 50.0
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 4.1e-46 189.5 358 40.5
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 3.5e-45 186.4 305 45.6
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 1.3e-44 184.5 344 40.7
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 4.3e-43 179.5 358 39.1
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 9.5e-43 178.3 314 39.5
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 4.0e-41 172.9 279 44.4
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 4.0e-41 172.9 348 40.8
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 1.5e-40 171.0 379 39.6
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.3e-39 167.9 269 46.8
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 2.3e-36 157.1 292 40.4
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.1e-35 154.8 133 68.4
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 3.3e-35 153.3 341 37.2
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 2.8e-34 150.2 352 35.8
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 1.8e-33 147.5 181 52.5
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 5.8e-32 142.5 295 41.0
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 5.4e-30 136.0 206 47.1
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 7.1e-30 135.6 311 36.7
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 1.2e-29 134.8 342 35.4
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 7.8e-29 132.1 304 35.5
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 3.0e-28 130.2 144 54.9
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 3.6e-26 123.2 245 43.7
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 3.2e-22 110.2 109 55.0
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 6.0e-21 105.9 314 34.7
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 7.8e-21 105.5 136 47.8
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 1.2e-16 91.7 102 53.9
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 7.6e-16 89.0 67 62.7
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 8.4e-15 85.5 124 46.0
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 1.1e-14 85.1 426 26.3
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.4e-14 84.7 140 45.0
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 2.7e-13 80.5 330 30.0
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 2.5e-11 73.9 217 33.6
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 8.1e-10 68.9 90 47.8
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 1.4e-09 68.2 149 39.6
Nitab4.5_0000047g0240 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.5e-08 64.7 86 47.7
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 8.4e-07 58.9 64 53.1
Medtr2g079040 Medicago truncatula HOM05D004638 ORTHO05D005443 1.1e-06 58.5 50 64.0
RcHm_v2.0_Chr5g0061161 Rosa chinensis HOM05D004638 ORTHO05D005443 3.2e-06 57.0 64 51.6
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 3.2e-06 57.0 138 37.0


User provided reference genes

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