Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007626 Daucus carota HOM05D000179 ORTHO05D176243 5.9e-167 590.9 319 100.0
Duzib160G0046 Durio zibethinus HOM05D000179 ORTHO05D000107 8.9e-22 108.6 391 28.6
Dinv37909 Davidia involucrata HOM05D000179 ORTHO05D000107 1.4e-19 101.3 334 33.8
Nitab4.5_0014751g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 9.2e-19 98.6 361 32.1
Duzib235G0039 Durio zibethinus HOM05D000179 ORTHO05D000107 1.2e-18 98.2 382 31.7
Actinidia21767 Actinidia chinensis HOM05D000179 ORTHO05D000107 1.6e-18 97.8 321 33.6
Actinidia32152 Actinidia chinensis HOM05D000179 ORTHO05D000107 3.5e-18 96.7 328 34.1
Solyc03g121660.3 Solanum lycopersicum HOM05D000179 ORTHO05D000107 3.9e-17 93.2 362 31.5
CiPaw.01G224200 Carya illinoinensis HOM05D000179 ORTHO05D000107 5.1e-17 92.8 331 33.2
CiPaw.02G139500 Carya illinoinensis HOM05D000179 ORTHO05D000107 1.5e-16 91.3 371 31.5
Ca_23325_v3 Cicer arietinum L. HOM05D000179 ORTHO05D000107 1.5e-16 91.3 353 33.4
Peaxi162Scf00038g01650 Petunia axillaris HOM05D000179 ORTHO05D000107 1.9e-16 90.9 331 32.9
Hma1.2p1_0388F.1_g142420 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 5.6e-16 89.4 385 32.5
Hma1.2p1_2617F.1_g325516 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 5.6e-16 89.4 385 32.5
Manes.04G140300 Manihot esculenta HOM05D000179 ORTHO05D000107 5.6e-16 89.4 221 41.2
Nn6g35502 Nelumbo nucifera HOM05D000179 ORTHO05D000107 7.3e-16 89.0 324 30.9
Nitab4.5_0001295g0240 Nicotiana tabacum HOM05D000179 ORTHO05D000107 7.3e-16 89.0 343 32.4
Sopen03g040470 Solanum pennellii HOM05D000179 ORTHO05D000107 9.5e-16 88.6 362 30.7
Thecc.06G112200 Theobroma cacao HOM05D000179 ORTHO05D000107 9.5e-16 88.6 239 36.8
vmacro18780 Vaccinium macrocarpon HOM05D000179 ORTHO05D000107 9.5e-16 88.6 339 32.2
Medtr2g099990 Medicago truncatula HOM05D000179 ORTHO05D000107 1.6e-15 87.8 324 29.3
TPR.G19279 Trifolium pratense HOM05D000179 ORTHO05D000107 2.1e-15 87.4 343 29.4
TPR.G6585 Trifolium pratense HOM05D000179 ORTHO05D000107 2.1e-15 87.4 313 32.3
PGSC0003DMG400002495 Solanum tuberosum HOM05D000179 ORTHO05D000107 4.7e-15 86.3 352 29.0
Duzib192G0314 Durio zibethinus HOM05D000179 ORTHO05D000107 8.1e-15 85.5 224 36.2
QL05p012055 Quercus lobata HOM05D000179 ORTHO05D000107 8.1e-15 85.5 378 30.4
CAN.G1389.28 Capsicum annuum HOM05D000179 ORTHO05D000107 1.1e-14 85.1 369 29.0
Lalb_Chr14g0372791 Lupinus albus HOM05D000179 ORTHO05D000107 1.4e-14 84.7 329 32.8
Glyma.13G349500 Glycine max HOM05D000179 ORTHO05D000107 2.3e-14 84.0 329 30.7
Glyma.15G024500 Glycine max HOM05D000179 ORTHO05D000107 2.3e-14 84.0 316 31.3
Lalb_Chr22g0351811 Lupinus albus HOM05D000179 ORTHO05D000107 3.1e-14 83.6 318 28.9
MD09G1192300 Malus domestica HOM05D000179 ORTHO05D000107 3.1e-14 83.6 343 30.9
Nitab4.5_0000255g0230 Nicotiana tabacum HOM05D000179 ORTHO05D000107 3.1e-14 83.6 375 30.9
CSS0010016 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 4.0e-14 83.2 363 32.2
Cfa003577 Carpinus fangiana HOM05D000179 ORTHO05D000107 4.0e-14 83.2 349 32.7
Lj3g0022046 Lotus japonicus HOM05D000179 ORTHO05D000107 5.2e-14 82.8 333 33.3
Manes.11G025600 Manihot esculenta HOM05D000179 ORTHO05D000107 6.8e-14 82.4 381 29.1
Cc04_g01870 Coffea canephora HOM05D000179 ORTHO05D000107 1.2e-13 81.6 353 30.0
Haze_15962 Corylus avellana HOM05D000179 ORTHO05D000107 1.2e-13 81.6 356 31.7
Potri.003G036900 Populus trichocarpa HOM05D000179 ORTHO05D000107 1.5e-13 81.3 372 28.8
Gohir.D05G136900 Gossypium hirsutum HOM05D000179 ORTHO05D000107 3.4e-13 80.1 214 38.8
Gorai.009G141200 Gossypium raimondii HOM05D000179 ORTHO05D000107 3.4e-13 80.1 214 38.8
SalBow6G0364 Salvia bowleyana HOM05D000179 ORTHO05D000107 3.4e-13 80.1 350 32.0
SalBow6G2815 Salvia bowleyana HOM05D000179 ORTHO05D000107 3.4e-13 80.1 350 32.0
Ciclev10025122m.g Citrus clementina HOM05D000179 ORTHO05D000107 4.4e-13 79.7 203 37.4
Nn8g38824 Nelumbo nucifera HOM05D000179 ORTHO05D000107 5.8e-13 79.3 374 31.3
Dinv30372 Davidia involucrata HOM05D000179 ORTHO05D000107 7.6e-13 79.0 400 29.8
Sed0025048 Sechium edule HOM05D000179 ORTHO05D000107 7.6e-13 79.0 306 31.0
Cpa.g.sc25.46 Carica papaya HOM05D000179 ORTHO05D000107 9.9e-13 78.6 375 27.5
MSTRG.10979 Avicennia marina HOM05D000179 ORTHO05D000107 1.3e-12 78.2 384 29.9
TAR626G1656 Trochodendron aralioides HOM05D000179 ORTHO05D000107 1.3e-12 78.2 342 30.7
FAN02G1544 Fragaria x ananassa HOM05D000179 ORTHO05D000107 1.7e-12 77.8 347 30.5
FAN05G4720 Fragaria x ananassa HOM05D000179 ORTHO05D000107 1.7e-12 77.8 357 30.3
Peaxi162Scf00207g01365 Petunia axillaris HOM05D000179 ORTHO05D000107 2.2e-12 77.4 314 31.5
HPP92_026780 Vanilla planifolia HOM05D000179 ORTHO05D000107 2.2e-12 77.4 322 27.6
Gohir.A05G134900 Gossypium hirsutum HOM05D000179 ORTHO05D000107 2.9e-12 77.0 212 37.7
Oeu026761.1 Olea europaea HOM05D000179 ORTHO05D000107 3.7e-12 76.6 358 29.3
MBI04_g34753_MAGBIO Magnolia biondii HOM05D000179 ORTHO05D000107 4.9e-12 76.3 348 29.0
MD17G1186000 Malus domestica HOM05D000179 ORTHO05D000107 4.9e-12 76.3 356 29.5
Rhsim08G0234300 Rhododendron simsii HOM05D000179 ORTHO05D000107 4.9e-12 76.3 361 28.3
Hund20839 Selenicereus undatus HOM05D000179 ORTHO05D000107 8.4e-12 75.5 414 27.8
THA.LOC104810341 Tarenaya hassleriana HOM05D000179 ORTHO05D000107 1.1e-11 75.1 293 31.4
Aqoxy7G04022 Aquilegia oxysepala HOM05D000179 ORTHO05D000107 4.1e-11 73.2 348 28.7
TWI32G1280 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 4.1e-11 73.2 342 28.7
Glyma.07G009100 Glycine max HOM05D000179 ORTHO05D000107 7.1e-11 72.4 334 29.9
Psat5g294040 Pisum sativum HOM05D000179 ORTHO05D000107 9.2e-11 72.0 312 28.8
ClCG07G013780 Citrullus lanatus HOM05D000179 ORTHO05D000107 1.6e-10 71.2 363 28.4
Thecc.09G055400 Theobroma cacao HOM05D000179 ORTHO05D000107 1.6e-10 71.2 211 35.5
DCAR_016152 Daucus carota HOM05D000179 ORTHO05D000107 2.7e-10 70.5 179 38.0
VMungo0331G1822 Vigna mungo HOM05D000179 ORTHO05D000107 3.5e-10 70.1 350 28.3
FvH4_6g33550 Fragaria vesca HOM05D000179 ORTHO05D000107 4.6e-10 69.7 352 30.1
FAN14G2605 Fragaria x ananassa HOM05D000179 ORTHO05D000107 4.6e-10 69.7 352 30.1
Haze_18170 Corylus avellana HOM05D000179 ORTHO05D000107 6.0e-10 69.3 343 26.8
Gohir.D10G060400 Gossypium hirsutum HOM05D000179 ORTHO05D000107 6.0e-10 69.3 223 34.5
Gorai.011G064700 Gossypium raimondii HOM05D000179 ORTHO05D000107 6.0e-10 69.3 221 35.7
QL02p001033 Quercus lobata HOM05D000179 ORTHO05D000107 6.0e-10 69.3 352 29.0
FAN09G2630 Fragaria x ananassa HOM05D000179 ORTHO05D000107 1.0e-09 68.6 346 28.9
Psat4g188200 Pisum sativum HOM05D000179 ORTHO05D000107 1.0e-09 68.6 359 29.0
COL.COLO4_21072 Corchorus olitorius HOM05D001513 ORTHO05D001494 1.7e-09 67.8 201 33.3
MBI01_g20334_MAGBIO Magnolia biondii HOM05D000179 ORTHO05D000107 1.7e-09 67.8 373 29.2
TWI63G0629 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 1.7e-09 67.8 333 32.1
Hma1.2p1_0055F.1_g031480 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 2.3e-09 67.4 357 28.9
Phvul.010G138200 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 2.3e-09 67.4 342 28.1
Prupe.1G410700 Prunus persica HOM05D000179 ORTHO05D000107 2.3e-09 67.4 326 30.7
TAR383G0521 Trochodendron aralioides HOM05D000179 ORTHO05D000107 2.3e-09 67.4 214 31.8
Dinv22886 Davidia involucrata HOM05D000179 ORTHO05D000107 3.9e-09 66.6 320 35.0
Gohir.A10G058700 Gossypium hirsutum HOM05D000179 ORTHO05D000107 3.9e-09 66.6 221 34.8
Lj9A519T89 Lonicera japonica HOM05D000179 ORTHO05D000107 3.9e-09 66.6 192 35.4
Potri.018G052200 Populus trichocarpa HOM05D000179 ORTHO05D000107 3.9e-09 66.6 202 34.2
Sabra03G0023700 Salix brachista HOM05D000179 ORTHO05D000107 3.9e-09 66.6 215 33.5
Eucgr.J02851 Eucalyptus grandis HOM05D000179 ORTHO05D000107 5.1e-09 66.2 214 33.2
TAR624G0643 Trochodendron aralioides HOM05D000179 ORTHO05D000107 5.1e-09 66.2 364 29.4
MSTRG.11655 Avicennia marina HOM05D000179 ORTHO05D000107 6.6e-09 65.9 344 27.3
PGR102G0676 Punica granatum HOM05D000179 ORTHO05D000107 8.6e-09 65.5 305 32.5
MSTRG.22576 Avicennia marina HOM05D000179 ORTHO05D000107 1.1e-08 65.1 359 28.1
Lalb_Chr14g0366341 Lupinus albus HOM05D000179 ORTHO05D000107 1.1e-08 65.1 358 28.8
Sed0013448 Sechium edule HOM05D000179 ORTHO05D000107 1.1e-08 65.1 307 28.0
CSS0019766 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 1.5e-08 64.7 373 30.0
Manes.03G049100 Manihot esculenta HOM05D000179 ORTHO05D000107 1.5e-08 64.7 270 31.5
Duzib150G1325 Durio zibethinus HOM05D000179 ORTHO05D000107 1.9e-08 64.3 392 26.5
Sed0019919 Sechium edule HOM05D000179 ORTHO05D000107 3.3e-08 63.5 310 31.0
CARHR088580 Cardamine hirsuta HOM05D000179 ORTHO05D000107 4.3e-08 63.2 325 28.9
THA.LOC104822634 Tarenaya hassleriana HOM05D000179 ORTHO05D000107 5.6e-08 62.8 331 29.3
A08p00950 Brassica napus HOM05D000179 ORTHO05D000107 7.3e-08 62.4 314 29.9
C03p92260 Brassica napus HOM05D000179 ORTHO05D000107 7.3e-08 62.4 314 30.9
Gohir.D06G086300 Gossypium hirsutum HOM05D000179 ORTHO05D000107 7.3e-08 62.4 353 27.2
Oeu003990.1 Olea europaea HOM05D000179 ORTHO05D000107 7.3e-08 62.4 313 29.7
VMungo1080G0915 Vigna mungo HOM05D000179 ORTHO05D000107 7.3e-08 62.4 334 31.7
Potri.006G227600 Populus trichocarpa HOM05D000179 ORTHO05D000107 9.6e-08 62.0 211 33.6
Rhsim12G0206500 Rhododendron simsii HOM05D001215 ORTHO05D008077 9.6e-08 62.0 318 28.6
EL10Ac7g16348 Beta vulgaris HOM05D000179 ORTHO05D000107 1.6e-07 61.2 192 34.4
BraA08t32150Z Brassica rapa HOM05D000179 ORTHO05D000107 1.6e-07 61.2 314 29.6
Gohir.A06G086800 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.6e-07 61.2 353 26.3
HanXRQChr03g0079611 Helianthus annuus HOM05D000179 ORTHO05D000107 1.6e-07 61.2 338 27.8
arahy.Tifrunner.gnm1.ann1.8W2D3B Arachis hypogaea HOM05D000179 ORTHO05D000107 2.1e-07 60.8 294 28.6
Eucgr.B01936 Eucalyptus grandis HOM05D000179 ORTHO05D000107 2.1e-07 60.8 206 33.5
Lj5A44T114 Lonicera japonica HOM05D000179 ORTHO05D000107 2.1e-07 60.8 347 28.0
BcaC01g01465 Brassica carinata HOM05D000179 ORTHO05D000107 2.8e-07 60.5 314 30.9
CiPaw.08G109700 Carya illinoinensis HOM05D000179 ORTHO05D000107 2.8e-07 60.5 284 31.0
Sabra18G0048300 Salix brachista HOM05D000179 ORTHO05D000107 2.8e-07 60.5 379 26.6
VMungo0647G2254 Vigna mungo HOM05D000179 ORTHO05D000107 2.8e-07 60.5 223 33.6
AL1G63110 Arabidopsis lyrata HOM05D000179 ORTHO05D000107 3.6e-07 60.1 318 27.7
Gorai.010G099600 Gossypium raimondii HOM05D000179 ORTHO05D000107 3.6e-07 60.1 353 26.9
RcHm_v2.0_Chr2g0143461 Rosa chinensis HOM05D000179 ORTHO05D000107 3.6e-07 60.1 337 26.4
Glyma.08G192300 Glycine max HOM05D000179 ORTHO05D000107 4.7e-07 59.7 344 28.2
HanXRQChr13g0410571 Helianthus annuus HOM05D000179 ORTHO05D000107 4.7e-07 59.7 337 28.2
Medtr8g017210 Medicago truncatula HOM05D000179 ORTHO05D000107 4.7e-07 59.7 332 28.9
Prupe.3G048600 Prunus persica HOM05D000179 ORTHO05D000107 4.7e-07 59.7 372 28.2
TWI31G1001 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 4.7e-07 59.7 311 28.9
Zm00001eb121010 Zea mays HOM05D000179 ORTHO05D000107 4.7e-07 59.7 302 27.2
Carub.0003s1336 Capsella rubella HOM05D000179 ORTHO05D000107 6.2e-07 59.3 337 29.7
Duzib187G1780 Durio zibethinus HOM05D000179 ORTHO05D000107 8.1e-07 58.9 299 28.8
PSO210G2047 Papaver somniferum HOM05D000179 ORTHO05D000107 8.1e-07 58.9 191 31.9
Aa31LG10G890 Aethionema arabicum HOM05D000179 ORTHO05D000107 1.1e-06 58.5 314 26.4
Phvul.001G036500 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 1.1e-06 58.5 185 32.4
vmacro17025 Vaccinium macrocarpon HOM05D000179 ORTHO05D000107 1.1e-06 58.5 329 31.0
CiPaw.07G086900 Carya illinoinensis HOM05D000179 ORTHO05D000107 1.4e-06 58.2 185 34.1
Gohir.A12G002800 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.8e-06 57.8 192 33.9
Lj3g0010441 Lotus japonicus HOM05D000179 ORTHO05D000107 1.8e-06 57.8 345 27.5
Lj5g0021439 Lotus japonicus HOM05D000179 ORTHO05D000107 1.8e-06 57.8 195 33.8
vmacro00137 Vaccinium macrocarpon HOM05D000179 ORTHO05D000107 1.8e-06 57.8 216 37.5
BolC3t21540H Brassica oleracea HOM05D000179 ORTHO05D000107 2.4e-06 57.4 314 29.3
Ciclev10007837m.g Citrus clementina HOM05D000179 ORTHO05D000107 2.4e-06 57.4 202 36.6
Glyma.17G228000 Glycine max HOM05D000179 ORTHO05D000107 2.4e-06 57.4 214 34.1
Nitab4.5_0007697g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 2.4e-06 57.4 329 27.4
arahy.Tifrunner.gnm1.ann1.IMP9EL Arachis hypogaea HOM05D000179 ORTHO05D000107 3.1e-06 57.0 294 27.6
CDE05G2720 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 3.1e-06 57.0 335 26.0
Medtr1g016010 Medicago truncatula HOM05D000179 ORTHO05D000107 3.1e-06 57.0 319 26.6
Oeu009348.1 Olea europaea HOM05D000179 ORTHO05D000107 3.1e-06 57.0 305 27.9
CSS0013504 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 4.0e-06 56.6 203 33.0
Sabra02G0039200 Salix brachista HOM05D000179 ORTHO05D000107 4.0e-06 56.6 210 32.4
Sabra06G0176100 Salix brachista HOM05D000179 ORTHO05D000107 4.0e-06 56.6 209 31.1
THA.LOC104815639 Tarenaya hassleriana HOM05D000179 ORTHO05D000107 4.0e-06 56.6 318 31.4
BcaC01g01462 Brassica carinata HOM05D000179 ORTHO05D024114 5.2e-06 56.2 182 35.2
Phvul.005G158600 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 6.8e-06 55.8 157 35.7
PGR031G1945 Punica granatum HOM05D000179 ORTHO05D000107 6.8e-06 55.8 191 32.5
Hund03331 Selenicereus undatus HOM05D000179 ORTHO05D000107 6.8e-06 55.8 122 33.6
Rhsim11G0043600 Rhododendron simsii HOM05D000179 ORTHO05D000107 8.9e-06 55.5 206 35.9
Sed0011577 Sechium edule HOM05D000179 ORTHO05D000107 8.9e-06 55.5 333 30.0


User provided reference genes

Program Settings