Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007625 Daucus carota HOM05D006504 ORTHO05D007867 4.9e-38 160.6 79 100.0
Nitab4.5_0001219g0120 Nicotiana tabacum HOM05D006504 ORTHO05D007867 2.6e-15 85.1 60 68.3
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 2.9e-14 81.6 85 54.1
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 4.9e-14 80.9 88 50.0
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 1.1e-13 79.7 85 51.8
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 1.4e-13 79.3 87 50.6
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 1.4e-13 79.3 85 52.9
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 1.9e-13 79.0 86 51.2
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 3.2e-13 78.2 85 51.8
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 4.2e-13 77.8 88 52.3
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 5.4e-13 77.4 85 50.6
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 5.4e-13 77.4 86 50.0
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 7.1e-13 77.0 85 50.6
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 7.1e-13 77.0 85 50.6
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 7.1e-13 77.0 58 58.6
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 9.3e-13 76.6 85 49.4
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 9.3e-13 76.6 87 50.6
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 9.3e-13 76.6 85 49.4
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 9.3e-13 76.6 85 49.4
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 1.2e-12 76.3 85 49.4
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 2.1e-12 75.5 85 50.6
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 3.5e-12 74.7 85 48.2
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 4.6e-12 74.3 86 50.0
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 7.9e-12 73.6 89 46.1
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 1.8e-11 72.4 86 45.3
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 2.3e-11 72.0 88 47.7
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 3.0e-11 71.6 89 44.9
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 3.0e-11 71.6 85 47.1
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 3.9e-11 71.2 86 47.7
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 3.9e-11 71.2 88 44.3
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 3.9e-11 71.2 85 44.7
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 8.7e-11 70.1 85 47.1
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 1.1e-10 69.7 86 46.5
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 1.1e-10 69.7 86 46.5
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 1.1e-10 69.7 88 47.7
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 2.5e-10 68.6 86 45.3
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 2.5e-10 68.6 87 46.0
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 2.5e-10 68.6 84 45.2
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 3.3e-10 68.2 85 44.7
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 3.3e-10 68.2 85 44.7
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 3.3e-10 68.2 85 44.7
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 3.3e-10 68.2 85 44.7
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 4.3e-10 67.8 85 47.1
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 4.3e-10 67.8 85 45.9
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 4.3e-10 67.8 88 44.3
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 4.3e-10 67.8 88 44.3
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 4.3e-10 67.8 85 47.1
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 5.6e-10 67.4 85 44.7
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 5.6e-10 67.4 82 46.3
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 7.4e-10 67.0 87 44.8
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 9.6e-10 66.6 85 44.7
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 1.3e-09 66.2 85 43.5
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.3e-09 66.2 85 43.5
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 1.6e-09 65.9 83 45.8
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.6e-09 65.9 85 47.1
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 2.1e-09 65.5 85 45.9
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 2.1e-09 65.5 85 45.9
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 2.1e-09 65.5 85 43.5
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 2.1e-09 65.5 85 43.5
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 2.1e-09 65.5 85 43.5
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 2.1e-09 65.5 86 45.3
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 2.8e-09 65.1 82 45.1
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 2.8e-09 65.1 85 43.5
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 3.7e-09 64.7 85 43.5
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 4.8e-09 64.3 82 45.1
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 1.1e-08 63.2 87 41.4
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 1.1e-08 63.2 82 42.7
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.4e-08 62.8 85 44.7
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 1.8e-08 62.4 83 43.4
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 2.4e-08 62.0 85 40.0
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 4.0e-08 61.2 85 42.4
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 4.0e-08 61.2 84 45.2
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 4.0e-08 61.2 85 38.8
AT1G29580 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 5.3e-08 60.8 58 50.0
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 6.9e-08 60.5 85 37.6
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 9.0e-08 60.1 80 43.8
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 9.0e-08 60.1 83 42.2
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 1.5e-07 59.3 80 43.8
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 1.5e-07 59.3 85 38.8
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 7.6e-07 57.0 85 37.6
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 7.6e-07 57.0 85 37.6
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 7.6e-07 57.0 85 37.6
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 9.9e-07 56.6 71 50.7
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 1.3e-06 56.2 84 34.5
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 1.7e-06 55.8 85 37.6
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 2.2e-06 55.5 87 37.9
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 2.9e-06 55.1 71 49.3
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 2.9e-06 55.1 83 34.9
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 3.8e-06 54.7 83 37.3
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 3.8e-06 54.7 83 37.3
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 4.9e-06 54.3 91 39.6
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 8.4e-06 53.5 74 44.6


User provided reference genes

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