Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007490 Daucus carota HOM05D005335 ORTHO05D006472 4.9e-76 287.7 146 100.0
Duzib084G1383 Durio zibethinus HOM05D005335 ORTHO05D006472 8.2e-31 137.5 170 50.6
A01p25690 Brassica napus HOM05D005335 ORTHO05D006472 6.9e-30 134.4 158 50.0
BraA01t02445Z Brassica rapa HOM05D005335 ORTHO05D006472 6.9e-30 134.4 158 50.0
AT3G48550 Arabidopsis thaliana HOM05D005335 ORTHO05D006472 2.0e-29 132.9 154 51.3
BolC1t03128H Brassica oleracea HOM05D005335 ORTHO05D006472 2.6e-29 132.5 160 48.1
AL5G28000 Arabidopsis lyrata HOM05D005335 ORTHO05D006472 4.5e-29 131.7 155 49.7
Actinidia36728 Actinidia chinensis HOM05D005335 ORTHO05D006472 1.0e-28 130.6 115 60.9
BcaB05g23008 Brassica carinata HOM05D005335 ORTHO05D006472 1.3e-28 130.2 156 48.7
A06p19120 Brassica napus HOM05D005335 ORTHO05D006472 1.3e-28 130.2 152 49.3
BraA06t24996Z Brassica rapa HOM05D005335 ORTHO05D006472 1.3e-28 130.2 152 49.3
Nn3g16458 Nelumbo nucifera HOM05D005335 ORTHO05D006472 5.0e-28 128.3 170 45.9
Thhalv10010777m.g Eutrema salsugineum HOM05D005335 ORTHO05D006472 1.1e-27 127.1 151 51.7
BcaC07g39341 Brassica carinata HOM05D005335 ORTHO05D006472 1.4e-27 126.7 160 48.8
C08p23580 Brassica napus HOM05D005335 ORTHO05D006472 1.4e-27 126.7 160 48.8
BolC8t49988H Brassica oleracea HOM05D005335 ORTHO05D006472 1.4e-27 126.7 160 48.8
Carub.0005s1474 Capsella rubella HOM05D005335 ORTHO05D006472 2.5e-27 125.9 160 48.1
Rhsim08G0190300 Rhododendron simsii HOM05D005335 ORTHO05D006472 2.5e-27 125.9 156 50.6
Sp5g13430 Schrenkiella parvula HOM05D005335 ORTHO05D006472 2.5e-27 125.9 86 70.9
Gohir.D05G361600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 4.2e-27 125.2 165 49.1
Gorai.009G431200 Gossypium raimondii HOM05D005335 ORTHO05D006472 4.2e-27 125.2 165 49.1
Aa31LG4G17170 Aethionema arabicum HOM05D005335 ORTHO05D006472 9.4e-27 124.0 86 69.8
BcaB01g00799 Brassica carinata HOM05D005335 ORTHO05D006472 9.4e-27 124.0 154 51.3
Gohir.D09G247500 Gossypium hirsutum HOM05D005335 ORTHO05D006472 9.4e-27 124.0 161 47.2
Gorai.006G272000 Gossypium raimondii HOM05D005335 ORTHO05D006472 9.4e-27 124.0 161 47.2
CSS0021703 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 2.3e-25 119.4 156 48.7
vmacro19206 Vaccinium macrocarpon HOM05D005335 ORTHO05D006472 2.3e-25 119.4 155 48.4
Actinidia08873 Actinidia chinensis HOM05D001420 ORTHO05D002488 3.0e-25 119.0 151 53.0
Gohir.D08G258700 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.9e-25 118.6 161 45.3
Ah.04g153430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 5.1e-25 118.2 167 49.7
DCAR_016388 Daucus carota HOM05D005335 ORTHO05D006472 5.7e-24 114.8 172 44.8
Gorai.004G276200 Gossypium raimondii HOM05D005335 ORTHO05D006472 5.7e-24 114.8 156 46.2
TAR371G0199 Trochodendron aralioides HOM05D005335 ORTHO05D006472 9.7e-24 114.0 169 43.8
MSTRG.11283 Avicennia marina HOM05D005335 ORTHO05D006472 2.8e-23 112.5 174 44.3
Dinv11173 Davidia involucrata HOM05D001420 ORTHO05D002488 6.3e-23 111.3 160 46.9
HPP92_009722 Vanilla planifolia HOM05D005335 ORTHO05D006472 1.1e-22 110.5 147 44.2
Hma1.2p1_0014F.1_g009400 Hydrangea macrophylla HOM05D005335 ORTHO05D006472 1.5e-21 106.7 170 42.9
Ah.11g045430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 2.0e-21 106.3 101 61.4
Gohir.A09G247000 Gossypium hirsutum HOM05D005335 ORTHO05D006472 2.0e-21 106.3 161 42.9
EL10Ac5g11411 Beta vulgaris HOM05D005335 ORTHO05D006472 2.6e-21 105.9 106 60.4
QL10p002879 Quercus lobata HOM05D005335 ORTHO05D006472 1.3e-20 103.6 180 42.2
Duzib205G0334 Durio zibethinus HOM05D005335 ORTHO05D006472 1.7e-20 103.2 171 42.7
Sc04g0000630 Simmondsia chinensis HOM05D005335 ORTHO05D006472 2.2e-20 102.8 146 43.8
FAN13G0785 Fragaria x ananassa HOM05D005335 ORTHO05D006472 3.8e-20 102.1 176 43.2
PGR044G0086 Punica granatum HOM05D005335 ORTHO05D006472 6.5e-20 101.3 169 42.6
AUR62029609 Chenopodium quinoa HOM05D005335 ORTHO05D006472 1.1e-19 100.5 104 59.6
Gohir.A04G026600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.1e-19 100.5 84 61.9
AUR62034828 Chenopodium quinoa HOM05D005335 ORTHO05D006472 1.4e-19 100.1 105 58.1
Lalb_Chr13g0297231 Lupinus albus HOM05D005335 ORTHO05D006472 2.5e-19 99.4 147 44.9
Atru.chr6.1795 Acer truncatum HOM05D005335 ORTHO05D006472 5.5e-19 98.2 158 44.9
CSS0038536 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 9.4e-19 97.4 178 43.8
Oeu023482.1 Olea europaea HOM05D005335 ORTHO05D006472 9.4e-19 97.4 169 40.2
Cc04_g09930 Coffea canephora HOM05D005335 ORTHO05D006472 4.7e-18 95.1 167 39.5
Oeu005014.1 Olea europaea HOM05D005335 ORTHO05D006472 6.1e-18 94.7 168 38.7
Rhsim12G0175000 Rhododendron simsii HOM05D005335 ORTHO05D006472 1.4e-17 93.6 165 40.6
Thecc.03G129400 Theobroma cacao HOM05D005335 ORTHO05D006472 2.3e-17 92.8 167 38.9
Actinidia25571 Actinidia chinensis HOM05D005335 ORTHO05D006472 1.1e-16 90.5 115 52.2
PSO017G0745 Papaver somniferum HOM05D005335 ORTHO05D006472 2.6e-16 89.4 93 51.6
Sed0021893 Sechium edule HOM05D005335 ORTHO05D006472 3.3e-16 89.0 150 42.7
Peaxi162Scf00009g00007 Petunia axillaris HOM05D005335 ORTHO05D006472 4.4e-16 88.6 167 40.7
ClCG06G017900 Citrullus lanatus HOM05D005335 ORTHO05D006472 5.7e-16 88.2 170 39.4
Haze_07140 Corylus avellana HOM05D005335 ORTHO05D006472 5.7e-16 88.2 170 40.6
Lj4g0005056 Lotus japonicus HOM05D005335 ORTHO05D006472 5.7e-16 88.2 105 46.7
HanXRQChr09g0273241 Helianthus annuus HOM05D005335 ORTHO05D006472 7.4e-16 87.8 169 36.1
MELO3C026206.2 Cucumis melo HOM05D005335 ORTHO05D006472 1.3e-15 87.0 170 39.4
Gohir.D07G055600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.3e-15 87.0 155 38.1
Gorai.001G058900 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.3e-15 87.0 155 38.1
Nitab4.5_0000514g0170 Nicotiana tabacum HOM05D005335 ORTHO05D006472 2.2e-15 86.3 172 39.0
CiPaw.11G007000 Carya illinoinensis HOM05D005335 ORTHO05D006472 2.8e-15 85.9 174 36.8
Gohir.A07G051200 Gossypium hirsutum HOM05D005335 ORTHO05D006472 2.8e-15 85.9 155 37.4
Cfa018794 Carpinus fangiana HOM05D005335 ORTHO05D006472 4.8e-15 85.1 172 39.5
Nitab4.5_0002403g0010 Nicotiana tabacum HOM05D005335 ORTHO05D006472 4.8e-15 85.1 176 38.1
Oeu045458.1 Olea europaea HOM05D005335 ORTHO05D006472 4.8e-15 85.1 169 37.9
Oeu045459.1 Olea europaea HOM05D005335 ORTHO05D006472 4.8e-15 85.1 169 37.9
SGA_v2.0_scaffold161G37793 Striga asiatica HOM05D005335 ORTHO05D006472 4.8e-15 85.1 110 47.3
HanXRQChr16g0498141 Helianthus annuus HOM05D005335 ORTHO05D006472 6.3e-15 84.7 177 36.7
Manes.06G119800 Manihot esculenta HOM05D005335 ORTHO05D006472 1.1e-14 84.0 172 38.4
Lsat_1_v5_gn_4_80981 Lactuca sativa HOM05D005335 ORTHO05D006472 1.4e-14 83.6 176 34.7
Cpa.g.sc13.114 Carica papaya HOM05D005335 ORTHO05D006472 1.8e-14 83.2 171 38.6
TWI39G0987 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 3.1e-14 82.4 171 38.0
CARHR157350 Cardamine hirsuta HOM05D005335 ORTHO05D006472 4.1e-14 82.0 116 48.3
Potri.012G097901 Populus trichocarpa HOM05D005335 ORTHO05D006472 4.1e-14 82.0 177 38.4
PSO478G4723 Papaver somniferum HOM05D005335 ORTHO05D006472 5.3e-14 81.6 128 43.0
COL.COLO4_28131 Corchorus olitorius HOM05D005335 ORTHO05D006472 1.6e-13 80.1 172 36.6
TPR.G19227 Trifolium pratense HOM05D005335 ORTHO05D006472 2.6e-13 79.3 147 40.1
CiPaw.12G043300 Carya illinoinensis HOM05D005335 ORTHO05D006472 3.5e-13 79.0 154 39.0
CsaV3_1G000550 Cucumis sativus L. HOM05D005335 ORTHO05D006472 3.5e-13 79.0 169 37.9
THA.LOC104818185 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 3.5e-13 79.0 149 38.3
VMungo1215G0398 Vigna mungo HOM05D005335 ORTHO05D006472 3.5e-13 79.0 152 40.8
Medtr4g103250 Medicago truncatula HOM05D005335 ORTHO05D006472 4.5e-13 78.6 149 38.9
Lalb_Chr07g0183461 Lupinus albus HOM05D005335 ORTHO05D006472 5.9e-13 78.2 145 39.3
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 7.7e-13 77.8 156 41.0
PSO017G4217 Papaver somniferum HOM05D005335 ORTHO05D006472 7.7e-13 77.8 128 42.2
Sabra15G0117300 Salix brachista HOM05D005335 ORTHO05D006472 7.7e-13 77.8 171 36.3
Aqoxy3G00598 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 1.0e-12 77.4 167 32.9
FAN04G0838 Fragaria x ananassa HOM05D005335 ORTHO05D006472 1.0e-12 77.4 177 36.7
Glyma.17G130400 Glycine max HOM05D005335 ORTHO05D006472 1.0e-12 77.4 151 38.4
THA.LOC104821517 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 1.0e-12 77.4 147 39.5
TAR629G1091 Trochodendron aralioides HOM05D005335 ORTHO05D006472 1.0e-12 77.4 167 33.5
Aqoxy5G03368 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 1.3e-12 77.0 170 34.1
Sabra12G0071600 Salix brachista HOM05D005335 ORTHO05D006472 1.3e-12 77.0 161 35.4
Dinv23148 Davidia involucrata HOM05D005335 ORTHO05D006472 1.7e-12 76.6 112 45.5
Migut.D01260 Erythranthe guttata HOM05D005335 ORTHO05D006472 1.7e-12 76.6 178 35.4
Psat4g066680 Pisum sativum HOM05D005335 ORTHO05D006472 1.7e-12 76.6 147 39.5
Ca_26102_v3 Cicer arietinum L. HOM05D005335 ORTHO05D006472 2.2e-12 76.3 149 37.6
Manes.14G051200 Manihot esculenta HOM05D005335 ORTHO05D006472 2.2e-12 76.3 143 42.0
Sopen03g032000 Solanum pennellii HOM05D005335 ORTHO05D006472 2.9e-12 75.9 178 36.5
CAN.G1305.23 Capsicum annuum HOM05D005335 ORTHO05D006472 3.8e-12 75.5 177 36.2
RcHm_v2.0_Chr7g0190101 Rosa chinensis HOM05D005335 ORTHO05D006472 5.0e-12 75.1 169 37.9
MD06G1141500 Malus domestica HOM05D005335 ORTHO05D006472 1.1e-11 73.9 170 36.5
Solyc03g112920.1 Solanum lycopersicum HOM05D005335 ORTHO05D006472 1.1e-11 73.9 178 36.0
PGSC0003DMG400018091 Solanum tuberosum HOM05D005335 ORTHO05D006472 1.1e-11 73.9 175 37.1
Ciclev10032959m.g Citrus clementina HOM05D005335 ORTHO05D006472 1.5e-11 73.6 171 36.8
FvH4_5g08350 Fragaria vesca HOM05D005335 ORTHO05D006472 2.5e-11 72.8 174 36.2
FAN18G1337 Fragaria x ananassa HOM05D005335 ORTHO05D006472 3.2e-11 72.4 174 36.2
Oeu030248.1 Olea europaea HOM05D005335 ORTHO05D006472 3.2e-11 72.4 167 34.7
PSO478G2775 Papaver somniferum HOM05D005335 ORTHO05D006472 7.2e-11 71.2 93 44.1
FAN08G1274 Fragaria x ananassa HOM05D005335 ORTHO05D006472 9.4e-11 70.9 177 35.0
Glyma.05G048500 Glycine max HOM05D005335 ORTHO05D006472 1.2e-10 70.5 152 38.8
ECA246G0037 Erigeron canadensis HOM05D005335 ORTHO05D006472 1.6e-10 70.1 144 36.1
Potri.015G096500 Populus trichocarpa HOM05D005335 ORTHO05D006472 1.6e-10 70.1 172 34.3
Nn4g22311 Nelumbo nucifera HOM05D005335 ORTHO05D006472 2.7e-10 69.3 169 36.1
Oeu007933.1 Olea europaea HOM05D000179 ORTHO05D000107 2.7e-10 69.3 83 45.8
BcaC09g49876 Brassica carinata HOM05D005335 ORTHO05D006472 3.6e-10 68.9 160 33.1
GSVIVG01008545001 Vitis vinifera HOM05D005335 ORTHO05D006472 3.6e-10 68.9 97 44.3
HanXRQChr05g0155191 Helianthus annuus HOM05D005335 ORTHO05D006472 6.1e-10 68.2 153 36.6
Oeu045270.1 Olea europaea HOM05D005335 ORTHO05D006472 1.0e-09 67.4 52 65.4
Migut.I00507 Erythranthe guttata HOM05D005335 ORTHO05D006472 1.8e-09 66.6 178 32.6
Lsat_1_v5_gn_1_28901 Lactuca sativa HOM05D005335 ORTHO05D006472 3.0e-09 65.9 118 39.8
THA.LOC104798946 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 5.2e-09 65.1 103 43.7
MSTRG.9361 Avicennia marina HOM05D000179 ORTHO05D000107 6.7e-09 64.7 86 39.5
Gohir.A11G002000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 6.7e-09 64.7 155 32.9
TWI23G0456 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 6.7e-09 64.7 170 32.9
Prupe.5G150800 Prunus persica HOM05D005335 ORTHO05D006472 8.8e-09 64.3 84 45.2
unitig_744.g24466 Utricularia gibba HOM05D005335 ORTHO05D006472 8.8e-09 64.3 162 34.0
Duzib068G0009 Durio zibethinus HOM05D000179 ORTHO05D000107 1.2e-08 63.9 85 42.4
EL10Ac8g19493 Beta vulgaris HOM05D000179 ORTHO05D000107 2.0e-08 63.2 83 41.0
Sed0012251 Sechium edule HOM05D005335 ORTHO05D006472 2.0e-08 63.2 160 33.1
CANSAT80G0357 Cannabis sativa HOM05D005335 ORTHO05D006472 2.6e-08 62.8 122 39.3
DCAR_030310 Daucus carota HOM05D000179 ORTHO05D000107 2.6e-08 62.8 142 32.4
Oeu047494.1 Olea europaea HOM05D005335 ORTHO05D006472 2.6e-08 62.8 73 43.8
MD14G1156700 Malus domestica HOM05D005335 ORTHO05D006472 3.3e-08 62.4 175 33.7
CAN.G65.84 Capsicum annuum HOM05D000179 ORTHO05D000107 4.4e-08 62.0 74 44.6
PGSC0003DMG400026959 Solanum tuberosum HOM05D000179 ORTHO05D000107 5.7e-08 61.6 76 46.1
Glyma.08G056800 Glycine max HOM05D000179 ORTHO05D000107 1.7e-07 60.1 136 30.9
Lalb_Chr14g0370451 Lupinus albus HOM05D000179 ORTHO05D028851 1.7e-07 60.1 80 36.2
Thecc.02G302800 Theobroma cacao HOM05D000179 ORTHO05D000107 2.2e-07 59.7 160 34.4
Peaxi162Scf00033g02311 Petunia axillaris HOM05D000179 ORTHO05D000107 3.7e-07 58.9 77 37.7
Glyma.05G248300 Glycine max HOM05D000179 ORTHO05D000107 4.8e-07 58.5 77 40.3
HPP92_019339 Vanilla planifolia HOM05D000179 ORTHO05D000107 1.4e-06 57.0 144 31.9
Oeu032145.1 Olea europaea HOM05D000179 ORTHO05D000107 2.4e-06 56.2 138 30.4
SGA_v2.0_scaffold72G24100 Striga asiatica HOM05D000179 ORTHO05D000107 4.1e-06 55.5 140 30.7
ClCG01G006810 Citrullus lanatus HOM05D000179 ORTHO05D000107 7.0e-06 54.7 74 40.5
Hma1.2p1_0095F.1_g047490 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 7.0e-06 54.7 141 31.2
QL03p039252 Quercus lobata HOM05D000179 ORTHO05D000107 9.1e-06 54.3 84 35.7


User provided reference genes

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