Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 1.8e-233 812.4 454 100.0
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 1.1e-145 520.8 457 68.3
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 1.5e-144 516.9 457 67.8
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 1.5e-144 516.9 457 67.8
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 2.6e-144 516.2 456 66.4
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 7.7e-144 514.6 458 68.1
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 2.2e-143 513.1 473 64.7
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 7.9e-141 504.6 460 64.8
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 2.3e-140 503.1 455 64.8
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 1.1e-139 500.7 460 64.3
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 1.1e-137 494.2 455 64.4
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 1.1e-137 494.2 454 64.8
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.1e-137 494.2 456 64.5
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 3.1e-137 492.7 458 66.2
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 6.9e-137 491.5 444 65.1
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 1.2e-136 490.7 456 63.8
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.6e-136 489.6 458 63.1
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 2.6e-136 489.6 454 63.4
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 5.9e-136 488.4 454 63.2
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 1.3e-135 487.3 456 63.6
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 1.7e-135 486.9 456 63.2
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 2.9e-135 486.1 458 64.4
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 3.8e-135 485.7 456 64.3
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.8e-135 485.7 455 62.6
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 6.5e-135 485.0 455 62.2
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 1.4e-134 483.8 466 62.9
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 1.9e-134 483.4 459 63.4
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 2.5e-134 483.0 433 67.2
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 1.6e-133 480.3 455 63.5
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 1.6e-133 480.3 455 62.4
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.1e-133 479.9 455 62.4
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 6.1e-133 478.4 458 62.9
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 3.0e-132 476.1 455 64.4
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 2.0e-131 473.4 453 64.5
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 1.7e-130 470.3 456 61.6
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 3.7e-130 469.2 463 61.1
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 6.3e-130 468.4 444 64.4
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 2.4e-129 466.5 456 62.9
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 2.4e-129 466.5 459 61.9
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 3.5e-128 462.6 463 61.3
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 4.5e-128 462.2 449 63.9
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 4.5e-128 462.2 451 62.5
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 1.1e-126 457.6 451 60.8
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 2.5e-126 456.4 455 60.9
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 4.2e-126 455.7 431 62.9
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 7.2e-126 454.9 453 59.6
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 1.6e-125 453.8 462 60.0
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 2.1e-125 453.4 455 60.0
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 4.7e-125 452.2 456 59.2
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 8.0e-125 451.4 456 60.1
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 3.0e-124 449.5 458 59.2
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 3.0e-124 449.5 458 59.6
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 1.2e-123 447.6 456 60.7
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 2.6e-123 446.4 456 60.3
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 4.4e-123 445.7 453 60.0
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 5.7e-123 445.3 456 59.6
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 5.7e-123 445.3 456 59.0
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 7.5e-123 444.9 460 58.7
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 1.7e-122 443.7 456 60.5
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 2.2e-122 443.4 456 58.6
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 4.8e-122 442.2 456 58.1
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 8.2e-122 441.4 457 58.2
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 1.4e-121 440.7 452 57.7
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 9.1e-121 438.0 455 57.1
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 1.2e-120 437.6 458 57.2
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 3.5e-120 436.0 458 57.6
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 7.7e-120 434.9 465 58.7
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 7.7e-120 434.9 455 60.4
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 7.7e-120 434.9 456 58.1
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 1.7e-119 433.7 455 60.2
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 3.8e-119 432.6 454 58.8
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 3.2e-118 429.5 474 55.7
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 4.2e-118 429.1 453 58.9
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 9.4e-118 427.9 456 58.6
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 2.7e-117 426.4 445 60.0
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 2.7e-117 426.4 445 60.0
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 1.2e-115 421.0 453 57.8
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 2.6e-115 419.9 451 57.9
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 9.8e-115 417.9 457 58.0
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 3.7e-114 416.0 489 53.8
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 8.3e-114 414.8 468 56.6
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 1.1e-113 414.5 453 57.2
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 3.1e-113 412.9 453 56.1
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 4.1e-113 412.5 453 57.2
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 1.6e-112 410.6 457 57.1
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 8.6e-111 404.8 458 55.9
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 5.5e-110 402.1 396 60.4
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 2.1e-109 400.2 413 57.4
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 8.9e-108 394.8 456 55.3
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 4.4e-107 392.5 454 55.1
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 5.0e-103 379.0 454 53.7
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 2.5e-102 376.7 431 55.5
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 7.5e-99 365.2 454 54.4
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.7e-98 362.8 330 63.9
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 1.1e-97 361.3 454 52.9
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 1.2e-96 357.8 470 50.6
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 1.2e-91 341.3 335 61.2
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 1.1e-89 334.7 372 57.3
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 1.1e-89 334.7 465 49.2
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 1.7e-87 327.4 380 54.7
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 7.3e-86 322.0 442 48.0
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 9.5e-86 321.6 469 48.2
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 1.1e-84 318.2 454 48.7
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.0e-84 316.2 409 49.9
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 7.5e-83 312.0 431 48.0
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 6.4e-82 308.9 420 49.5
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 5.1e-79 299.3 461 44.5
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 2.5e-78 297.0 398 47.7
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 2.2e-74 283.9 289 58.5
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 2.4e-73 280.4 368 49.5
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 9.6e-70 268.5 280 57.9
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 9.9e-59 231.9 229 62.9
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 8.7e-55 218.8 243 55.1
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 7.4e-54 215.7 352 44.9
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 2.8e-53 213.8 201 65.2
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 8.4e-50 202.2 248 53.2
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 1.1e-49 201.8 198 58.1
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 1.2e-48 198.4 286 49.7
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 5.1e-47 193.0 379 38.3
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.5e-46 191.4 326 45.1
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 1.5e-46 191.4 367 39.2
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 9.6e-46 188.7 385 40.8
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 3.4e-43 180.3 461 34.5
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.0e-42 178.7 155 67.1
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.3e-39 167.5 210 51.4
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 2.5e-38 164.1 181 55.2
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 9.7e-38 162.2 275 44.4
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 1.1e-33 148.7 433 31.4
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 8.8e-31 139.0 130 63.8
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 2.5e-30 137.5 170 52.9
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 3.7e-29 133.7 105 67.6
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.1e-28 130.6 185 48.6
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 6.5e-26 122.9 158 52.5
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 4.1e-20 103.6 91 60.4
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 2.0e-19 101.3 146 51.4
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 8.5e-18 95.9 75 72.0
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 2.8e-13 80.9 67 70.1
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 1.6e-11 75.1 100 51.0
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 4.2e-09 67.0 91 47.3
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 4.7e-08 63.5 194 35.1
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 4.0e-07 60.5 37 75.7
Cre01.g043400 Chlamydomonas reinhardtii HOM05D005278 ORTHO05D006500 3.4e-06 57.4 200 26.5
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 7.5e-06 56.2 73 52.1


User provided reference genes

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