Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 5.4e-92 340.9 163 100.0
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 4.6e-83 311.2 163 89.6
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 1.9e-76 289.3 163 81.6
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 4.2e-76 288.1 163 81.0
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 9.3e-76 287.0 163 81.0
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 2.7e-75 285.4 163 79.1
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 3.5e-75 285.0 163 80.4
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 1.0e-74 283.5 163 80.4
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 1.8e-74 282.7 163 80.4
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 1.8e-74 282.7 163 80.4
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 2.3e-74 282.3 163 79.1
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 3.0e-74 282.0 163 79.1
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 5.1e-74 281.2 163 79.8
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 1.9e-73 279.3 163 77.9
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 7.4e-73 277.3 163 77.9
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 7.4e-73 277.3 163 77.3
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 3.7e-72 275.0 163 74.8
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 6.3e-72 274.2 151 82.8
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 8.2e-72 273.9 151 82.1
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 8.2e-72 273.9 163 76.7
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 8.2e-72 273.9 162 76.5
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 2.4e-71 272.3 163 77.9
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 1.5e-70 269.6 163 74.8
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 2.6e-70 268.9 163 73.6
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 1.0e-69 266.9 163 74.8
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 3.8e-69 265.0 162 74.1
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 5.0e-69 264.6 148 80.4
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 8.5e-69 263.8 163 72.4
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 8.5e-69 263.8 159 74.8
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 1.1e-68 263.5 163 75.5
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 1.1e-68 263.5 162 72.8
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 1.4e-68 263.1 163 74.2
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.4e-68 263.1 163 73.6
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.9e-68 262.7 154 76.6
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 2.5e-68 262.3 148 79.7
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 4.2e-68 261.5 163 73.6
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 9.4e-68 260.4 154 76.6
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 9.4e-68 260.4 163 70.6
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 1.2e-67 260.0 163 71.8
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 1.2e-67 260.0 154 76.0
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 2.7e-67 258.8 163 69.9
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 2.7e-67 258.8 163 71.8
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 2.7e-67 258.8 154 75.3
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 4.6e-67 258.1 163 69.9
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 4.6e-67 258.1 163 69.9
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 6.1e-67 257.7 163 72.4
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 7.9e-67 257.3 163 74.2
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 7.9e-67 257.3 163 69.9
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 7.9e-67 257.3 153 74.5
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 1.0e-66 256.9 163 69.3
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 1.4e-66 256.5 163 69.3
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 2.3e-66 255.8 163 68.7
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 3.0e-66 255.4 163 69.3
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 3.0e-66 255.4 163 73.6
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 5.1e-66 254.6 165 73.3
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 5.1e-66 254.6 165 73.3
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 5.1e-66 254.6 163 74.2
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 8.8e-66 253.8 163 68.1
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 8.8e-66 253.8 165 73.3
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 8.8e-66 253.8 146 80.1
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 8.8e-66 253.8 163 74.2
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 1.1e-65 253.4 163 68.7
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 1.1e-65 253.4 149 77.2
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 1.5e-65 253.1 146 78.1
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 1.5e-65 253.1 163 69.9
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 1.5e-65 253.1 163 73.0
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 1.5e-65 253.1 152 76.3
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 2.0e-65 252.7 147 76.9
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 2.0e-65 252.7 147 76.9
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 2.5e-65 252.3 165 72.7
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 3.3e-65 251.9 151 73.5
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 5.7e-65 251.1 157 72.0
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 7.4e-65 250.8 162 69.1
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 7.4e-65 250.8 163 69.3
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 9.7e-65 250.4 163 67.5
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 4.8e-64 248.1 153 70.6
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 4.8e-64 248.1 153 70.6
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 6.3e-64 247.7 139 79.1
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 8.2e-64 247.3 144 77.1
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 8.2e-64 247.3 165 70.9
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 1.1e-63 246.9 163 66.9
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 1.4e-63 246.5 163 69.3
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 2.4e-63 245.7 147 75.5
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 5.3e-63 244.6 152 69.7
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 9.1e-63 243.8 153 69.3
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.5e-62 243.0 152 72.4
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 3.4e-62 241.9 149 74.5
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 4.5e-62 241.5 165 67.3
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 5.9e-62 241.1 165 69.7
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 1.3e-61 240.0 164 68.9
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 1.7e-61 239.6 163 68.1
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 2.2e-61 239.2 147 72.1
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.9e-61 238.8 141 75.2
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 5.0e-61 238.0 161 66.5
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 8.5e-61 237.3 142 74.6
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 1.4e-60 236.5 164 67.1
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 1.9e-60 236.1 163 67.5
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 2.5e-60 235.7 144 71.5
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 2.5e-60 235.7 144 71.5
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 3.2e-60 235.3 165 65.5
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.2e-59 233.4 155 67.7
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 2.7e-59 232.3 178 63.5
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 2.7e-59 232.3 154 68.8
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 6.1e-59 231.1 136 75.0
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 1.8e-58 229.6 163 65.6
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 5.1e-58 228.0 142 72.5
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 2.0e-57 226.1 154 66.9
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 7.4e-57 224.2 160 66.2
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 2.8e-56 222.2 139 71.9
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 4.8e-56 221.5 144 69.4
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.8e-55 219.5 124 79.8
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 7.0e-55 217.6 136 69.9
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 1.3e-53 213.4 163 66.3
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 7.2e-52 207.6 143 62.9
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 3.0e-50 202.2 110 81.8
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 6.7e-50 201.1 163 58.9
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 3.8e-45 185.3 153 58.2
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 2.1e-43 179.5 163 50.3
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 1.8e-42 176.4 163 49.1
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.3e-40 170.2 123 65.0
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 1.8e-39 166.4 163 53.4
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 4.1e-39 165.2 124 62.9
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 3.8e-37 158.7 123 58.5
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 1.9e-36 156.4 103 68.9
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 9.4e-36 154.1 149 52.3
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 4.7e-35 151.8 164 48.8
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 6.1e-35 151.4 164 48.2
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 1.2e-33 147.1 176 48.9
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 1.5e-33 146.7 163 47.9
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 2.0e-33 146.4 176 48.9
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 2.0e-33 146.4 123 56.1
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 2.4e-31 139.4 132 55.3
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 7.0e-31 137.9 164 45.7
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 2.9e-29 132.5 165 41.2
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 3.8e-29 132.1 90 68.9
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 2.2e-24 116.3 139 42.4
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 2.0e-22 109.8 67 76.1
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 5.8e-17 91.7 62 66.1
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 6.2e-11 71.6 120 33.3
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 5.2e-10 68.6 53 56.6
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 1.5e-09 67.0 62 54.8
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 7.5e-09 64.7 59 54.2
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 2.4e-07 59.7 43 65.1
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 5.4e-07 58.5 48 50.0


User provided reference genes

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