Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 4.5e-222 774.2 380 100.0
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 1.4e-143 513.5 372 68.8
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 1.1e-138 497.3 371 67.1
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 1.0e-133 480.7 380 62.1
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 2.3e-133 479.6 370 65.7
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 2.3e-133 479.6 380 61.3
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 3.9e-133 478.8 370 65.1
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 5.1e-133 478.4 380 61.6
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 5.6e-132 474.9 388 63.9
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 1.4e-130 470.3 368 64.7
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 4.0e-130 468.8 383 61.6
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 2.9e-128 462.6 370 63.8
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 3.2e-127 459.1 383 60.6
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 6.0e-126 454.9 374 65.0
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 7.9e-126 454.5 373 62.7
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 1.0e-125 454.1 386 59.8
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.0e-125 452.6 379 61.2
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 3.0e-125 452.6 371 61.5
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 1.1e-124 450.7 333 67.0
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.9e-124 449.9 379 60.9
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 2.5e-124 449.5 336 66.4
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 4.3e-124 448.7 379 61.2
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.1e-123 446.4 379 60.9
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 2.8e-123 446.0 372 62.1
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 1.4e-122 443.7 372 61.8
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 3.1e-122 442.6 384 59.9
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 5.3e-122 441.8 364 61.0
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 1.5e-121 440.3 364 61.8
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 4.5e-121 438.7 328 67.7
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 5.8e-121 438.3 374 61.2
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 7.6e-121 438.0 368 60.6
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.2e-120 436.4 405 57.5
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 2.9e-120 436.0 372 59.7
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 3.8e-120 435.6 366 60.7
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 6.5e-120 434.9 366 60.7
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 8.4e-120 434.5 371 61.2
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 1.9e-119 433.3 370 61.4
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 2.5e-119 433.0 382 58.6
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 4.2e-119 432.2 365 58.6
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 4.2e-119 432.2 375 60.5
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 5.5e-119 431.8 333 64.0
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 6.0e-118 428.3 375 60.3
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 7.9e-118 427.9 360 59.2
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 1.8e-117 426.8 370 59.2
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 3.0e-117 426.0 438 51.8
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 8.7e-117 424.5 355 61.1
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 2.2e-115 419.9 345 60.3
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 2.8e-115 419.5 380 58.4
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 8.2e-115 417.9 319 62.7
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 1.1e-114 417.5 332 64.5
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 1.1e-114 417.5 370 57.6
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 2.0e-113 413.3 366 58.7
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 2.0e-113 413.3 335 60.0
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 1.3e-112 410.6 342 62.0
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 1.7e-112 410.2 337 61.7
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 2.9e-112 409.5 319 63.9
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 5.0e-112 408.7 372 56.2
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 6.5e-112 408.3 385 56.6
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 8.5e-112 407.9 371 57.1
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 3.2e-111 406.0 341 59.5
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 4.2e-111 405.6 379 56.5
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 5.5e-111 405.2 315 62.5
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 1.2e-110 404.1 377 57.0
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 6.1e-110 401.7 375 57.9
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 7.9e-110 401.4 379 55.4
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 1.4e-109 400.6 366 56.6
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 1.8e-109 400.2 376 54.5
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 5.1e-109 398.7 382 56.0
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 1.1e-108 397.5 297 66.0
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 3.3e-108 396.0 309 63.1
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 7.4e-108 394.8 322 61.8
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 9.7e-108 394.4 368 55.2
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 9.7e-108 394.4 366 55.2
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 1.7e-107 393.7 322 61.5
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 1.7e-107 393.7 371 55.8
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 2.2e-107 393.3 321 62.3
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 2.8e-107 392.9 326 61.3
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 2.8e-107 392.9 326 60.4
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 1.4e-106 390.6 351 56.4
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 2.4e-106 389.8 370 55.9
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 6.9e-106 388.3 323 61.3
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 6.9e-106 388.3 285 66.3
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 9.1e-106 387.9 309 61.8
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 1.5e-105 387.1 387 54.3
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 1.5e-105 387.1 325 60.9
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 1.5e-105 387.1 356 56.5
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 2.2e-104 383.3 345 55.1
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 3.8e-104 382.5 325 60.3
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 8.5e-104 381.3 367 54.5
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 3.2e-103 379.4 278 68.7
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 5.5e-103 378.6 326 60.4
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 7.2e-103 378.3 364 55.5
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 9.4e-103 377.9 383 53.5
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 1.6e-102 377.1 322 58.4
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 3.0e-101 372.9 272 67.6
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 5.1e-101 372.1 370 54.6
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 8.8e-101 371.3 372 53.8
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.0e-100 370.2 272 67.3
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.8e-99 366.3 315 58.1
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 7.0e-98 361.7 345 55.9
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 9.1e-98 361.3 288 61.8
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 3.5e-97 359.4 361 53.2
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 5.0e-96 355.5 370 52.4
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 4.2e-95 352.4 322 54.3
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 2.1e-94 350.1 301 55.8
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 8.0e-94 348.2 323 57.9
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 6.7e-93 345.1 269 65.4
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 1.1e-92 344.4 321 57.0
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 4.8e-91 339.0 312 53.8
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 7.2e-87 325.1 277 60.6
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 1.0e-80 304.7 284 53.5
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 6.5e-80 302.0 259 61.8
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 1.2e-76 291.2 328 48.2
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 2.0e-76 290.4 289 51.6
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 6.3e-67 258.8 307 44.6
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 3.9e-64 249.6 188 65.4
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 3.9e-64 249.6 244 54.9
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 4.3e-63 246.1 295 46.4
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 4.7e-62 242.7 266 47.0
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 1.4e-61 241.1 264 46.6
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 3.4e-60 236.5 291 42.3
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 4.4e-60 236.1 267 47.6
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 1.1e-55 221.5 285 42.5
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 7.8e-49 198.7 177 58.2
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 4.3e-47 193.0 179 54.7
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 2.1e-33 147.5 131 56.5
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 5.1e-32 142.9 131 54.2
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 1.5e-28 131.3 92 66.3
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 3.5e-25 120.2 167 44.9
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 1.1e-23 115.2 109 53.2
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 2.4e-21 107.5 125 48.8
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 2.4e-21 107.5 125 48.8
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 3.4e-20 103.6 86 62.8
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 2.3e-16 90.9 74 64.9
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 3.7e-14 83.6 87 48.3
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 3.8e-11 73.6 108 37.0
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 4.9e-11 73.2 71 52.1
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 6.7e-08 62.8 50 62.0
Manes.06G141400 Manihot esculenta HOM05D000559 ORTHO05D000596 6.2e-06 56.2 78 38.5


User provided reference genes

Program Settings