Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007373 Daucus carota HOM05D002693 ORTHO05D035002 7.1e-15 82.8 43 100.0
DCAR_006073 Daucus carota HOM05D002693 ORTHO05D035002 2.3e-13 77.8 40 100.0
DCAR_016425 Daucus carota HOM05D002693 ORTHO05D008074 4.3e-12 73.6 40 95.0
HanXRQChr05g0156121 Helianthus annuus HOM05D002693 ORTHO05D008074 4.3e-12 73.6 40 95.0
PSO478G4803 Papaver somniferum HOM05D002693 ORTHO05D008074 4.3e-12 73.6 40 95.0
PSO017G1659 Papaver somniferum HOM05D002693 ORTHO05D008074 9.5e-12 72.4 40 92.5
Ah.15g095420 Amaranthus hybridus HOM05D002693 ORTHO05D008074 1.2e-11 72.0 40 92.5
ECA246G3621 Erigeron canadensis HOM05D002693 ORTHO05D008074 1.2e-11 72.0 40 92.5
EL10Ac7g18055 Beta vulgaris HOM05D002693 ORTHO05D008074 2.8e-11 70.9 40 90.0
Lsat_1_v5_gn_5_13101 Lactuca sativa HOM05D002693 ORTHO05D008074 2.8e-11 70.9 40 92.5
CANSAT80G0417 Cannabis sativa HOM05D002693 ORTHO05D008074 4.7e-11 70.1 40 87.5
CSS0044980 Camellia sinensis var. sinensis HOM05D002693 ORTHO05D008074 6.2e-11 69.7 40 90.0
Dinv38484 Davidia involucrata HOM05D002693 ORTHO05D008074 6.2e-11 69.7 40 90.0
Nn4g22488 Nelumbo nucifera HOM05D002693 ORTHO05D008074 6.2e-11 69.7 40 90.0
Actinidia36776 Actinidia chinensis HOM05D002693 ORTHO05D008074 1.4e-10 68.6 40 87.5
Aqoxy3G01325 Aquilegia oxysepala HOM05D002693 ORTHO05D008074 1.8e-10 68.2 40 90.0
Cpa.g.sc4.47 Carica papaya HOM05D002693 ORTHO05D008074 1.8e-10 68.2 40 87.5
AUR62001263 Chenopodium quinoa HOM05D002693 ORTHO05D008074 1.8e-10 68.2 40 87.5
AUR62025747 Chenopodium quinoa HOM05D002693 ORTHO05D008074 1.8e-10 68.2 40 87.5
ClCG06G017610 Citrullus lanatus HOM05D002693 ORTHO05D008074 1.8e-10 68.2 40 87.5
MELO3C026235.2 Cucumis melo HOM05D002693 ORTHO05D008074 1.8e-10 68.2 40 87.5
DCAR_013582 Daucus carota HOM05D002693 ORTHO05D008074 1.8e-10 68.2 40 85.0
Eucgr.K02765 Eucalyptus grandis HOM05D002693 ORTHO05D008074 1.8e-10 68.2 40 87.5
FvH4_5g07070 Fragaria vesca HOM05D002693 ORTHO05D008074 1.8e-10 68.2 40 87.5
FAN04G2647 Fragaria x ananassa HOM05D002693 ORTHO05D008074 1.8e-10 68.2 40 87.5
FAN08G3291 Fragaria x ananassa HOM05D002693 ORTHO05D008074 1.8e-10 68.2 40 87.5
FAN13G1374 Fragaria x ananassa HOM05D002693 ORTHO05D008074 1.8e-10 68.2 40 87.5
FAN18G1738 Fragaria x ananassa HOM05D002693 ORTHO05D008074 1.8e-10 68.2 40 87.5
Glyma.04G191700 Glycine max HOM05D002693 ORTHO05D008074 1.8e-10 68.2 40 85.0
Glyma.06G174200 Glycine max HOM05D002693 ORTHO05D008074 1.8e-10 68.2 40 85.0
Peaxi162Scf00089g00838 Petunia axillaris HOM05D002693 ORTHO05D008074 1.8e-10 68.2 40 87.5
Potri.015G088500 Populus trichocarpa HOM05D002693 ORTHO05D008074 1.8e-10 68.2 40 87.5
Prupe.5G159800 Prunus persica HOM05D002693 ORTHO05D008074 1.8e-10 68.2 40 87.5
RcHm_v2.0_Chr7g0191481 Rosa chinensis HOM05D002693 ORTHO05D008074 1.8e-10 68.2 40 87.5
Sabra15G0111400 Salix brachista HOM05D002693 ORTHO05D008074 1.8e-10 68.2 40 87.5
Sed0019566 Sechium edule HOM05D002693 ORTHO05D008074 1.8e-10 68.2 40 87.5
MSTRG.11525 Avicennia marina HOM05D002693 ORTHO05D008074 2.3e-10 67.8 40 87.5
Ciclev10020897m.g Citrus clementina HOM05D002693 ORTHO05D008074 2.3e-10 67.8 40 87.5
PGR044G0360 Punica granatum HOM05D002693 ORTHO05D008074 2.3e-10 67.8 40 85.0
Rhsim12G0171100 Rhododendron simsii HOM05D002693 ORTHO05D008074 2.3e-10 67.8 40 87.5
SGA_v2.0_scaffold90G27784 Striga asiatica HOM05D002693 ORTHO05D008074 2.3e-10 67.8 40 87.5
TAR622G1430 Trochodendron aralioides HOM05D002693 ORTHO05D008074 2.3e-10 67.8 40 87.5
GSVIVG01007572001 Vitis vinifera HOM05D002693 ORTHO05D008074 2.3e-10 67.8 40 87.5
AT3G48420 Arabidopsis thaliana HOM05D002693 ORTHO05D008074 3.1e-10 67.4 40 85.0
BcaB01g00815 Brassica carinata HOM05D002693 ORTHO05D008074 3.1e-10 67.4 40 85.0
BcaC01g02341 Brassica carinata HOM05D002693 ORTHO05D008074 3.1e-10 67.4 40 85.0
BcaC07g39324 Brassica carinata HOM05D002693 ORTHO05D008074 3.1e-10 67.4 40 85.0
A06p19280 Brassica napus HOM05D002693 ORTHO05D008074 3.1e-10 67.4 40 85.0
C03p66400 Brassica napus HOM05D002693 ORTHO05D008074 3.1e-10 67.4 40 85.0
C08p23410 Brassica napus HOM05D002693 ORTHO05D008074 3.1e-10 67.4 40 85.0
BolC3t18913H Brassica oleracea HOM05D002693 ORTHO05D008074 3.1e-10 67.4 40 85.0
BolC8t49969H Brassica oleracea HOM05D002693 ORTHO05D008074 3.1e-10 67.4 40 85.0
BraA06t25011Z Brassica rapa HOM05D002693 ORTHO05D008074 3.1e-10 67.4 40 85.0
Carub.0005s1458 Capsella rubella HOM05D002693 ORTHO05D008074 3.1e-10 67.4 40 85.0
Cfa018903 Carpinus fangiana HOM05D002693 ORTHO05D008074 3.1e-10 67.4 40 85.0
DCAR_009115 Daucus carota HOM05D002693 ORTHO05D008074 3.1e-10 67.4 39 87.2
Migut.O00226 Erythranthe guttata HOM05D002693 ORTHO05D008074 3.1e-10 67.4 40 85.0
Thhalv10010540m.g Eutrema salsugineum HOM05D002693 ORTHO05D008074 3.1e-10 67.4 40 85.0
MD14G1165800 Malus domestica HOM05D002693 ORTHO05D008074 3.1e-10 67.4 40 87.5
RcHm_v2.0_Chr5g0027641 Rosa chinensis HOM05D002693 ORTHO05D035002 3.1e-10 67.4 40 87.5
Sp5g13640 Schrenkiella parvula HOM05D002693 ORTHO05D008074 3.1e-10 67.4 40 85.0
MBI08_g18358_MAGBIO Magnolia biondii HOM05D002693 ORTHO05D008074 4.0e-10 67.0 40 82.5
VMungo1309G0913 Vigna mungo HOM05D002693 ORTHO05D008074 4.0e-10 67.0 40 82.5
CsaV3_1G000830 Cucumis sativus L. HOM05D002693 ORTHO05D008074 5.2e-10 66.6 40 85.0
TWI23G0591 Tripterygium wilfordii HOM05D002693 ORTHO05D008074 5.2e-10 66.6 40 85.0
unitig_0.g1407 Utricularia gibba HOM05D002693 ORTHO05D008074 5.2e-10 66.6 40 82.5
CiPaw.11G013400 Carya illinoinensis HOM05D002693 ORTHO05D008074 6.8e-10 66.2 40 85.0
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 6.8e-10 66.2 40 85.0
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 6.8e-10 66.2 40 85.0
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 6.8e-10 66.2 40 85.0
SalBow5G1929 Salvia bowleyana HOM05D002693 ORTHO05D008074 6.8e-10 66.2 40 85.0
Hund18531 Selenicereus undatus HOM05D002693 ORTHO05D008074 6.8e-10 66.2 40 85.0
Aa31LG4G16990 Aethionema arabicum HOM05D002693 ORTHO05D008074 8.9e-10 65.9 40 85.0
Nitab4.5_0001360g0120 Nicotiana tabacum HOM05D002693 ORTHO05D008074 8.9e-10 65.9 40 82.5
Nitab4.5_0002531g0130 Nicotiana tabacum HOM05D002693 ORTHO05D008074 8.9e-10 65.9 40 82.5
QL10p005573 Quercus lobata HOM05D002693 ORTHO05D008074 8.9e-10 65.9 40 85.0
Solyc03g111610.3 Solanum lycopersicum HOM05D002693 ORTHO05D008074 8.9e-10 65.9 40 85.0
PGSC0003DMG400015165 Solanum tuberosum HOM05D002693 ORTHO05D008074 8.9e-10 65.9 40 85.0
ATR0824G037 Amborella trichopoda HOM05D002693 ORTHO05D008074 1.2e-09 65.5 40 82.5
A06p27660 Brassica napus HOM05D002693 ORTHO05D008074 1.2e-09 65.5 40 80.0
Cc04_g10650 Coffea canephora HOM05D002693 ORTHO05D008074 1.2e-09 65.5 40 85.0
Oeu053509.1 Olea europaea HOM05D002693 ORTHO05D008074 1.2e-09 65.5 40 85.0
arahy.Tifrunner.gnm1.ann1.3ZI7DD Arachis hypogaea HOM05D002693 ORTHO05D008074 1.5e-09 65.1 40 82.5
Duzib205G0413 Durio zibethinus HOM05D002693 ORTHO05D008074 1.5e-09 65.1 40 82.5
Sc22g0003900 Simmondsia chinensis HOM05D002693 ORTHO05D008074 1.5e-09 65.1 40 85.0
THA.LOC104821498 Tarenaya hassleriana HOM05D002693 ORTHO05D008074 1.5e-09 65.1 40 82.5
Lalb_Chr11g0069751 Lupinus albus HOM05D002693 ORTHO05D008074 2.0e-09 64.7 40 80.0
Phvul.009G169900 Phaseolus vulgaris HOM05D002693 ORTHO05D008074 2.0e-09 64.7 40 80.0
CAN.G472.45 Capsicum annuum HOM05D002693 ORTHO05D008074 2.6e-09 64.3 40 82.5
COL.COLO4_04553 Corchorus olitorius HOM05D002693 ORTHO05D008074 2.6e-09 64.3 40 80.0
Lj1g0007454 Lotus japonicus HOM05D002693 ORTHO05D008074 2.6e-09 64.3 40 80.0
Thecc.03G121000 Theobroma cacao HOM05D002693 ORTHO05D008074 2.6e-09 64.3 40 80.0
Os03g0565200 Oryza sativa ssp. japonica HOM05D002693 ORTHO05D008074 3.4e-09 63.9 40 80.0
BcaB02g10654 Brassica carinata HOM05D002693 ORTHO05D008074 4.4e-09 63.5 40 82.5
Gohir.A09G244700 Gossypium hirsutum HOM05D002693 ORTHO05D008074 4.4e-09 63.5 40 80.0
Gorai.006G270000 Gossypium raimondii HOM05D002693 ORTHO05D008074 4.4e-09 63.5 40 80.0
Sopen03g030730 Solanum pennellii HOM05D002693 ORTHO05D008074 4.4e-09 63.5 40 82.5
CDE06G2530 Ceratophyllum demersum HOM05D002693 ORTHO05D008074 5.8e-09 63.2 40 80.0
Medtr3g075230 Medicago truncatula HOM05D002693 ORTHO05D008074 5.8e-09 63.2 40 77.5
SEGI_18096 Sequoiadendron giganteum HOM05D002693 ORTHO05D008074 5.8e-09 63.2 40 77.5
TPR.G38598 Trifolium pratense HOM05D002693 ORTHO05D008074 5.8e-09 63.2 40 77.5
HPP92_010508 Vanilla planifolia HOM05D002693 ORTHO05D008074 5.8e-09 63.2 40 80.0
MD06G1160600 Malus domestica HOM05D002693 ORTHO05D008074 7.6e-09 62.8 40 80.0
Manes.06G113900 Manihot esculenta HOM05D002693 ORTHO05D008074 7.6e-09 62.8 40 82.5
Gohir.D09G245600 Gossypium hirsutum HOM05D002693 ORTHO05D008074 1.3e-08 62.0 40 77.5
Zm00001eb113090 Zea mays HOM05D002693 ORTHO05D008074 1.7e-08 61.6 40 77.5
BcaNung06062 Brassica carinata HOM05D002693 ORTHO05D008074 3.7e-08 60.5 44 75.0
Prupe.5G159700 Prunus persica HOM05D002693 ORTHO05D008074 3.7e-08 60.5 38 81.6
AagrBONN_evm.TU.Sc2ySwM_362.2434 Anthoceros agrestis HOM05D002693 ORTHO05D008074 3.2e-07 57.4 40 72.5
SMO367G1130 Selaginella moellendorffii HOM05D002693 ORTHO05D008074 3.2e-07 57.4 40 70.0
SGA_v2.0_scaffold237G43872 Striga asiatica HOM05D002693 ORTHO05D008074 3.2e-07 57.4 37 75.7
CBR_g22462 Chara braunii HOM05D002693 ORTHO05D008074 1.2e-06 55.5 40 67.5
Pp3c10_2693 Physcomitrium patens HOM05D002693 ORTHO05D008074 3.5e-06 53.9 40 70.0
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 4.6e-06 53.5 40 75.0
Mapoly0082s0060 Marchantia polymorpha HOM05D002693 ORTHO05D008074 7.8e-06 52.8 40 67.5


User provided reference genes

Program Settings