Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 1.4e-234 815.8 404 100.0
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 2.8e-174 615.5 404 74.8
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 6.3e-166 587.8 404 69.8
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 8.3e-166 587.4 404 69.8
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 3.1e-165 585.5 405 68.9
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 5.4e-165 584.7 405 68.6
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 7.0e-165 584.3 403 70.2
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 1.6e-164 583.2 404 70.0
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 2.7e-164 582.4 405 68.9
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 5.9e-164 581.3 405 68.4
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 7.8e-164 580.9 405 68.9
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 1.0e-163 580.5 404 67.6
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 2.3e-163 579.3 404 69.6
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 2.9e-163 578.9 406 70.0
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 5.0e-163 578.2 404 69.1
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 1.1e-162 577.0 405 68.9
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 5.6e-162 574.7 404 68.6
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 7.3e-162 574.3 404 67.6
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 4.7e-161 571.6 404 69.3
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 6.1e-161 571.2 405 69.6
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 6.1e-161 571.2 404 68.1
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 1.4e-160 570.1 406 69.2
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 6.8e-160 567.8 366 76.0
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 1.2e-159 567.0 404 69.8
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 1.2e-159 567.0 406 69.5
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 1.5e-159 566.6 405 66.7
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.5e-159 566.6 405 66.4
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 9.8e-159 563.9 404 69.3
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.3e-158 563.5 406 68.7
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 2.2e-158 562.8 404 68.3
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 2.9e-158 562.4 419 66.3
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 1.1e-157 560.5 406 67.0
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 1.1e-157 560.5 405 69.4
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 1.8e-157 559.7 404 67.6
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 7.0e-157 557.8 417 66.7
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 1.2e-156 557.0 406 66.3
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 1.6e-156 556.6 408 67.6
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 1.3e-155 553.5 411 65.5
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 1.7e-155 553.1 404 65.8
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 3.0e-155 552.4 411 66.4
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 3.0e-155 552.4 404 67.1
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 3.0e-155 552.4 406 64.8
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 5.0e-155 551.6 407 66.1
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 8.6e-155 550.8 404 66.8
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 1.9e-154 549.7 414 67.4
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 3.3e-154 548.9 449 63.5
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 1.2e-153 547.0 409 65.8
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 1.6e-153 546.6 406 66.3
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 4.7e-153 545.0 405 65.4
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 1.4e-152 543.5 409 66.0
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 1.8e-152 543.1 405 64.9
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 1.8e-152 543.1 425 62.6
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 5.2e-152 541.6 404 66.6
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 8.9e-152 540.8 409 65.8
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 2.6e-151 539.3 404 65.8
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 7.5e-151 537.7 406 63.8
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 7.5e-151 537.7 406 63.8
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 7.5e-151 537.7 411 66.7
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.3e-150 537.0 406 64.5
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 1.3e-150 537.0 399 66.9
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 3.7e-150 535.4 406 64.3
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 4.9e-150 535.0 404 65.3
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 4.1e-149 531.9 407 65.4
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 5.4e-149 531.6 404 63.1
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 7.0e-149 531.2 408 63.7
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 9.2e-149 530.8 404 62.1
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 9.2e-149 530.8 450 61.6
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 2.7e-148 529.3 406 64.5
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 4.6e-148 528.5 407 64.4
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 4.6e-148 528.5 404 62.9
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.7e-147 526.6 408 64.7
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 1.5e-146 523.5 408 64.7
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 1.5e-146 523.5 408 64.7
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 1.5e-146 523.5 407 64.1
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 2.5e-146 522.7 398 64.3
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 2.5e-146 522.7 404 62.1
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 4.3e-146 521.9 408 63.5
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 1.2e-145 520.4 407 63.6
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 2.8e-145 519.2 407 64.4
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 5.2e-144 515.0 400 62.0
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 6.8e-144 514.6 400 63.2
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.2e-143 513.8 395 62.0
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 2.6e-143 512.7 365 67.9
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 4.4e-143 511.9 484 55.8
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 4.9e-142 508.4 431 59.6
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 4.1e-141 505.4 390 63.3
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 1.2e-140 503.8 412 60.0
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 6.0e-140 501.5 344 68.9
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 7.8e-140 501.1 398 62.1
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 3.9e-139 498.8 437 60.9
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 3.9e-139 498.8 437 60.9
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.6e-137 493.4 405 60.5
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 8.9e-136 487.6 398 62.3
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 4.4e-135 485.3 397 61.5
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.9e-133 479.9 405 60.5
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 1.6e-132 476.9 407 60.9
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 8.1e-129 464.5 386 60.1
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 1.2e-127 460.7 332 66.3
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 4.4e-127 458.8 416 57.5
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 4.4e-127 458.8 400 59.2
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 1.3e-126 457.2 398 57.0
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 8.4e-126 454.5 398 56.5
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 1.4e-125 453.8 401 57.4
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 9.3e-125 451.1 400 57.8
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 7.8e-124 448.0 364 60.7
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 5.1e-123 445.3 396 57.6
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 1.5e-122 443.7 382 58.1
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 1.1e-120 437.6 404 56.9
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 2.4e-120 436.4 317 65.0
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 1.6e-116 423.7 396 54.5
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 4.6e-116 422.2 396 54.0
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.8e-115 420.2 398 53.3
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 3.9e-115 419.1 328 61.9
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.5e-114 417.2 402 54.7
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 2.5e-114 416.4 396 54.3
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 8.1e-113 411.4 402 55.0
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 8.1e-113 411.4 400 53.2
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 1.1e-112 411.0 402 55.0
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 5.8e-111 405.2 385 54.3
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 1.3e-110 404.1 404 52.7
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 6.4e-110 401.7 249 73.9
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 1.6e-108 397.1 361 56.2
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 7.4e-106 388.3 402 52.0
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 2.1e-105 386.7 260 73.5
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 2.8e-105 386.3 402 52.2
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 2.8e-105 386.3 321 57.9
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 1.8e-104 383.6 402 52.2
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 3.4e-103 379.4 389 50.6
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 3.4e-103 379.4 389 50.6
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 7.6e-103 378.3 389 50.4
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 1.7e-102 377.1 397 51.9
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 1.2e-100 370.9 406 52.2
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.7e-100 369.8 272 62.5
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 5.1e-99 365.5 392 50.3
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.5e-98 364.0 262 67.6
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 4.5e-95 352.4 358 52.0
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 8.5e-94 348.2 272 63.2
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.5e-90 337.4 229 69.0
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 2.2e-89 333.6 338 50.3
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.7e-89 332.8 257 62.3
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 6.3e-89 332.0 400 44.5
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 2.2e-86 323.6 338 49.7
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 1.5e-82 310.8 250 60.8
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 4.8e-81 305.8 397 43.6
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 5.3e-80 302.4 264 58.0
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 3.4e-79 299.7 402 41.5
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 1.6e-76 290.8 414 41.3
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 4.4e-74 282.7 367 44.1
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 8.0e-68 261.9 281 50.5
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 2.3e-67 260.4 193 64.8
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.1e-64 250.0 154 71.4
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 1.2e-58 231.5 443 34.5
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 8.9e-43 178.7 364 34.6
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 9.8e-42 175.3 129 69.8
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 2.2e-41 174.1 449 30.3
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 4.9e-41 172.9 124 72.6
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 6.0e-39 166.0 139 62.6
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 7.3e-37 159.1 111 64.9
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 1.7e-33 147.9 124 60.5
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 7.0e-32 142.5 302 34.4
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 3.5e-31 140.2 302 34.1
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 7.8e-31 139.0 385 30.4
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 1.7e-25 121.3 361 25.8
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 1.9e-21 107.8 69 66.7
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 5.6e-21 106.3 67 76.1
MBI06_g42297_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 2.4e-19 100.9 95 56.8
SEGI_32331 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 3.2e-16 90.5 110 47.3
CARHR204860 Cardamine hirsuta HOM05D003933 ORTHO05D004746 2.1e-12 77.8 61 59.0
BolC2t12147H Brassica oleracea HOM05D003933 ORTHO05D028341 9.9e-10 68.9 57 61.4
Psat7g177720 Pisum sativum HOM05D003933 ORTHO05D004746 2.9e-09 67.4 44 77.3
PGSC0003DMG401019957 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.8e-09 67.0 70 48.6
BcaC03g13212 Brassica carinata HOM05D003933 ORTHO05D004746 5.4e-08 63.2 138 34.8
COL.COLO4_20881 Corchorus olitorius HOM05D003933 ORTHO05D004746 3.0e-06 57.4 55 52.7


User provided reference genes

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