Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 2.6e-144 515.4 260 100.0
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 3.5e-93 345.5 223 76.2
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 1.3e-92 343.6 224 75.9
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 3.0e-92 342.4 223 74.9
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 1.9e-91 339.7 224 76.3
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 1.9e-91 339.7 223 76.7
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 3.3e-91 339.0 224 74.1
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 5.6e-91 338.2 217 76.0
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 7.4e-91 337.8 223 76.7
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 2.8e-90 335.9 223 74.4
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 2.8e-90 335.9 223 74.9
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 2.8e-90 335.9 223 74.9
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 4.8e-90 335.1 223 74.4
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 6.2e-90 334.7 224 74.1
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 8.1e-90 334.3 223 74.4
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 1.1e-89 334.0 223 74.9
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 1.1e-89 334.0 223 74.0
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 1.1e-89 334.0 223 74.9
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 1.1e-89 334.0 223 74.9
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 2.4e-89 332.8 224 73.7
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 2.4e-89 332.8 214 76.6
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 2.4e-89 332.8 212 77.4
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 3.1e-89 332.4 213 75.6
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 4.0e-89 332.0 256 68.8
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 5.3e-89 331.6 223 74.4
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 6.9e-89 331.3 214 76.2
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 6.9e-89 331.3 223 74.4
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 6.9e-89 331.3 224 73.7
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 9.0e-89 330.9 223 73.1
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 9.0e-89 330.9 222 74.3
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.5e-88 330.1 214 76.2
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.0e-88 329.7 242 69.0
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 3.4e-88 328.9 224 73.7
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 3.4e-88 328.9 213 74.6
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 4.5e-88 328.6 234 72.6
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 4.5e-88 328.6 223 73.5
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 5.8e-88 328.2 223 72.2
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 7.6e-88 327.8 223 73.5
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 9.9e-88 327.4 223 74.0
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 9.9e-88 327.4 213 75.1
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 1.3e-87 327.0 214 76.2
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 1.7e-87 326.6 224 73.7
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 1.7e-87 326.6 213 76.5
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 2.2e-87 326.2 223 73.1
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 2.2e-87 326.2 223 74.4
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 2.9e-87 325.9 217 75.1
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 4.9e-87 325.1 222 74.3
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 4.9e-87 325.1 249 68.3
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 8.4e-87 324.3 213 74.6
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 1.4e-86 323.6 224 71.0
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 1.4e-86 323.6 236 69.1
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 2.4e-86 322.8 223 73.5
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 3.2e-86 322.4 224 70.1
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 7.1e-86 321.2 213 75.6
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 7.1e-86 321.2 235 68.5
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 9.3e-86 320.9 230 71.3
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 9.3e-86 320.9 214 73.8
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 1.2e-85 320.5 223 72.2
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 1.2e-85 320.5 213 74.2
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 1.6e-85 320.1 230 70.4
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 2.1e-85 319.7 224 72.3
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 2.1e-85 319.7 223 70.9
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 6.0e-85 318.2 224 71.0
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 7.9e-85 317.8 211 74.4
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 1.0e-84 317.4 226 70.4
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 1.8e-84 316.6 223 70.4
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 1.8e-84 316.6 246 67.5
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 1.8e-84 316.6 223 69.5
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 8.7e-84 314.3 224 69.2
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 1.9e-83 313.2 213 71.4
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 3.3e-83 312.4 225 71.1
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 4.3e-83 312.0 213 70.9
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 4.3e-83 312.0 213 70.9
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 7.4e-83 311.2 218 71.6
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 1.3e-82 310.5 213 70.0
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 3.7e-82 308.9 217 70.5
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 8.2e-82 307.8 213 70.0
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 8.2e-82 307.8 213 70.0
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 1.1e-81 307.4 217 70.0
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 4.0e-81 305.4 218 67.9
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 9.0e-81 304.3 217 67.7
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 7.6e-80 301.2 245 62.4
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 8.4e-79 297.7 222 66.2
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 1.1e-78 297.4 224 67.0
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 1.2e-77 293.9 197 73.1
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 1.3e-76 290.4 215 67.0
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 2.5e-75 286.2 215 66.0
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 3.3e-75 285.8 213 67.1
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 1.8e-73 280.0 192 72.9
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 3.1e-73 279.3 234 62.4
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 4.1e-73 278.9 186 73.7
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 5.3e-73 278.5 223 65.0
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 9.0e-73 277.7 256 59.4
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 3.4e-72 275.8 222 64.4
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 5.0e-71 271.9 215 64.7
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 4.2e-70 268.9 198 66.7
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 1.2e-69 267.3 213 64.3
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 1.2e-69 267.3 191 67.5
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 2.1e-69 266.5 192 68.2
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 3.0e-68 262.7 257 57.6
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 9.7e-67 257.7 173 72.3
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 3.4e-64 249.2 210 61.9
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 3.4e-64 249.2 223 59.6
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.4e-62 243.8 170 71.2
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 1.5e-59 233.8 211 59.7
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 2.0e-56 223.4 203 52.2
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 1.0e-55 221.1 223 52.9
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 3.2e-54 216.1 228 49.6
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 3.6e-53 212.6 215 49.3
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 2.3e-52 209.9 223 53.4
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 1.0e-44 184.5 197 53.8
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.0e-43 180.3 167 53.9
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 3.7e-42 176.0 213 46.9
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 8.8e-36 154.8 172 51.2
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.2e-27 127.9 75 84.0
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.8e-25 120.6 92 65.2
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 2.0e-24 117.1 73 78.1
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 1.5e-22 110.9 75 76.0
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 4.3e-22 109.4 73 76.7
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 6.8e-20 102.1 75 70.7
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 1.7e-18 97.4 86 58.1
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 4.9e-18 95.9 166 36.7
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 8.3e-18 95.1 74 59.5
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 2.7e-16 90.1 75 64.0
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 7.8e-16 88.6 78 55.1
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 1.0e-15 88.2 233 29.6
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 3.0e-15 86.7 59 72.9
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 7.3e-14 82.0 166 36.7
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 1.6e-13 80.9 75 54.7
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 2.8e-13 80.1 106 44.3
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 6.2e-13 79.0 190 36.8
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 8.0e-13 78.6 92 48.9
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 1.4e-12 77.8 200 36.5
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 5.2e-12 75.9 50 70.0
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 8.9e-12 75.1 89 48.3
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 1.4e-09 67.8 95 42.1
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 1.9e-09 67.4 49 69.4
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 2.4e-09 67.0 55 61.8
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 3.5e-08 63.2 45 66.7
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 3.5e-08 63.2 45 66.7
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 1.7e-07 60.8 182 26.4
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 3.0e-07 60.1 220 24.5
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 8.6e-07 58.5 168 26.2
SGA_v2.0_scaffold467G52044 Striga asiatica HOM05D000074 ORTHO05D006342 8.6e-07 58.5 43 65.1
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 1.1e-06 58.2 168 25.6
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 1.5e-06 57.8 184 23.4
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 1.5e-06 57.8 211 25.1
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 1.9e-06 57.4 168 26.2
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.9e-06 57.4 59 40.7
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 1.9e-06 57.4 210 24.8
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 2.5e-06 57.0 193 24.4
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 5.6e-06 55.8 52 57.7
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 9.5e-06 55.1 201 24.4


User provided reference genes

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