Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 6.1e-226 787.3 454 100.0
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 2.5e-94 350.1 458 53.3
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 4.0e-52 209.9 484 35.3
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 1.3e-45 188.3 604 30.3
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 4.8e-45 186.4 484 37.0
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 1.8e-44 184.5 661 31.2
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 4.9e-42 176.4 470 34.3
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 1.9e-41 174.5 541 33.3
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 5.5e-41 172.9 571 30.3
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 5.5e-41 172.9 557 30.0
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 5.5e-41 172.9 536 32.8
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 4.6e-40 169.9 537 33.0
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 3.0e-39 167.2 533 33.0
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 3.9e-39 166.8 512 32.4
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 6.7e-39 166.0 466 32.6
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 5.7e-38 162.9 623 28.7
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.3e-37 161.8 543 33.9
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 1.6e-37 161.4 559 29.0
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 2.2e-37 161.0 657 30.4
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 3.7e-37 160.2 697 28.4
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.2e-35 155.2 595 29.9
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 2.2e-34 151.0 534 29.4
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 2.2e-34 151.0 616 28.1
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 2.9e-34 150.6 668 30.1
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 5.0e-34 149.8 478 30.8
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 3.2e-33 147.1 636 29.4
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 1.2e-32 145.2 491 29.9
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.2e-32 145.2 164 51.2
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.6e-32 144.8 165 50.9
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.6e-32 144.8 165 50.9
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 2.7e-32 144.1 167 48.5
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 3.6e-32 143.7 707 28.7
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 1.4e-31 141.7 514 29.8
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 3.0e-31 140.6 456 31.6
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 5.1e-31 139.8 167 49.1
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 6.7e-31 139.4 164 48.8
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 4.3e-30 136.7 311 36.0
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 7.4e-30 136.0 172 44.8
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 7.4e-30 136.0 263 38.4
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 1.3e-29 135.2 669 28.3
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.3e-29 135.2 162 46.9
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 4.8e-29 133.3 193 48.7
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 1.1e-28 132.1 646 26.9
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.4e-28 131.7 174 46.6
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 1.4e-28 131.7 164 57.3
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 4.1e-28 130.2 272 39.7
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 4.1e-28 130.2 208 50.5
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 4.1e-28 130.2 165 57.0
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 5.3e-28 129.8 182 43.4
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 2.0e-27 127.9 207 42.5
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 4.5e-27 126.7 207 52.2
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 4.5e-27 126.7 665 29.3
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 5.9e-27 126.3 625 29.0
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 7.7e-27 125.9 96 68.8
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.0e-26 125.6 179 41.9
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 1.7e-26 124.8 168 60.7
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 2.2e-26 124.4 99 62.6
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 2.9e-26 124.0 620 27.7
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 3.8e-26 123.6 759 24.8
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 6.5e-26 122.9 452 28.8
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 8.5e-26 122.5 238 44.5
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 8.5e-26 122.5 224 48.2
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.1e-25 122.1 447 32.7
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 1.1e-25 122.1 598 30.3
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 1.4e-25 121.7 92 67.4
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.4e-25 121.7 229 52.8
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 1.9e-25 121.3 590 29.3
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 4.2e-25 120.2 186 47.8
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 7.2e-25 119.4 172 54.7
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 7.2e-25 119.4 162 45.1
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 9.4e-25 119.0 331 44.1
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 9.4e-25 119.0 169 62.1
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 1.6e-24 118.2 582 32.6
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 2.7e-24 117.5 452 28.8
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.7e-24 117.5 230 50.4
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 3.6e-24 117.1 166 42.2
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 6.1e-24 116.3 100 62.0
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 6.1e-24 116.3 613 29.9
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 7.9e-24 115.9 89 65.2
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 2.3e-23 114.4 281 45.6
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 2.3e-23 114.4 87 65.5
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 3.9e-23 113.6 164 58.5
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 8.8e-23 112.5 281 33.5
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.0e-22 111.3 281 45.2
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 2.0e-22 111.3 166 54.2
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 2.0e-22 111.3 93 58.1
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 2.0e-22 111.3 174 48.9
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 2.6e-22 110.9 455 31.2
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 2.6e-22 110.9 725 24.3
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 3.3e-22 110.5 582 32.3
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 3.3e-22 110.5 653 28.9
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 4.4e-22 110.2 606 29.7
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 5.7e-22 109.8 228 46.5
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 5.7e-22 109.8 87 62.1
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 5.7e-22 109.8 154 42.9
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 7.4e-22 109.4 536 25.6
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 9.7e-22 109.0 492 26.4
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.3e-21 108.6 606 29.4
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 1.3e-21 108.6 170 43.5
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 2.2e-21 107.8 97 60.8
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 2.2e-21 107.8 474 27.4
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 3.7e-21 107.1 180 43.3
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 3.7e-21 107.1 87 59.8
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 6.3e-21 106.3 174 42.0
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 8.2e-21 105.9 169 46.2
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 1.1e-20 105.5 89 59.6
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 1.4e-20 105.1 650 27.2
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 1.4e-20 105.1 564 29.6
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 1.4e-20 105.1 223 33.6
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 1.2e-19 102.1 167 55.7
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 1.5e-19 101.7 175 37.7
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 2.0e-19 101.3 95 53.7
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 5.9e-19 99.8 167 57.5
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 5.9e-19 99.8 167 57.5
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 5.9e-19 99.8 566 29.7
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 7.7e-19 99.4 179 51.4
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 1.3e-18 98.6 288 30.2
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 2.9e-18 97.4 225 38.2
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.9e-18 97.4 80 62.5
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 8.5e-18 95.9 382 30.4
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 8.5e-18 95.9 240 34.6
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 4.2e-17 93.6 436 30.3
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 5.5e-17 93.2 189 51.3
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 5.5e-17 93.2 164 50.0
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 9.4e-17 92.4 160 50.6
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 2.1e-16 91.3 567 25.4
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 2.7e-16 90.9 167 55.1
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 2.7e-16 90.9 167 55.1
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 2.7e-16 90.9 198 34.3
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 2.7e-16 90.9 192 48.4
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 8.0e-16 89.4 206 41.3
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 6.7e-15 86.3 70 64.3
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 8.8e-15 85.9 171 39.8
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 4.4e-14 83.6 162 35.8
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 1.7e-13 81.6 88 51.1
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 6.3e-13 79.7 95 50.5
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 1.1e-12 79.0 111 42.3
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 1.8e-12 78.2 350 30.9
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 1.3e-10 72.0 455 24.4
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 3.2e-09 67.4 273 28.9
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 9.4e-09 65.9 72 48.6


User provided reference genes

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