Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 1.8e-30 135.2 66 100.0
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 2.4e-14 81.6 48 75.0
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 3.1e-14 81.3 51 74.5
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 3.1e-14 81.3 48 75.0
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 4.1e-14 80.9 48 77.1
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 4.1e-14 80.9 51 70.6
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 4.1e-14 80.9 51 70.6
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 4.1e-14 80.9 51 70.6
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 5.4e-14 80.5 48 79.2
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 9.2e-14 79.7 48 75.0
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 9.2e-14 79.7 48 75.0
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 9.2e-14 79.7 48 75.0
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 9.2e-14 79.7 48 75.0
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 9.2e-14 79.7 51 68.6
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 1.2e-13 79.3 48 72.9
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 1.6e-13 79.0 48 72.9
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 1.6e-13 79.0 48 72.9
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 1.6e-13 79.0 48 72.9
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.6e-13 79.0 51 68.6
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 2.0e-13 78.6 51 72.5
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 2.0e-13 78.6 48 72.9
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 2.0e-13 78.6 48 72.9
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 2.0e-13 78.6 48 72.9
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 2.7e-13 78.2 48 72.9
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 2.7e-13 78.2 48 75.0
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 2.7e-13 78.2 51 68.6
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 3.5e-13 77.8 51 68.6
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 3.5e-13 77.8 51 68.6
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 3.5e-13 77.8 51 66.7
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 4.5e-13 77.4 49 71.4
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 4.5e-13 77.4 48 72.9
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 4.5e-13 77.4 48 72.9
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 5.9e-13 77.0 48 70.8
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 5.9e-13 77.0 51 64.7
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 7.8e-13 76.6 46 73.9
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 7.8e-13 76.6 48 70.8
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 7.8e-13 76.6 48 70.8
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 7.8e-13 76.6 51 64.7
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 1.0e-12 76.3 48 72.9
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.3e-12 75.9 48 70.8
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 1.3e-12 75.9 48 70.8
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 2.9e-12 74.7 49 69.4
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 2.9e-12 74.7 51 62.7
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 3.9e-12 74.3 48 70.8
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 5.0e-12 73.9 48 72.9
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 5.0e-12 73.9 51 64.7
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 6.6e-12 73.6 48 66.7
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 8.6e-12 73.2 51 62.7
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 8.6e-12 73.2 48 66.7
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 8.6e-12 73.2 48 66.7
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 8.6e-12 73.2 49 65.3
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 1.1e-11 72.8 51 62.7
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 1.1e-11 72.8 48 66.7
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 1.1e-11 72.8 48 68.8
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 1.5e-11 72.4 51 70.6
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 1.5e-11 72.4 48 68.8
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 1.5e-11 72.4 50 70.0
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 2.5e-11 71.6 48 68.8
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 3.3e-11 71.2 48 68.8
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 4.3e-11 70.9 48 68.8
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 4.3e-11 70.9 48 70.8
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 5.6e-11 70.5 48 68.8
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 5.6e-11 70.5 48 68.8
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 7.3e-11 70.1 48 66.7
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 7.3e-11 70.1 48 68.8
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 9.5e-11 69.7 48 66.7
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 9.5e-11 69.7 48 66.7
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 9.5e-11 69.7 49 67.3
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 9.5e-11 69.7 48 66.7
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 9.5e-11 69.7 48 66.7
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 9.5e-11 69.7 48 66.7
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 1.2e-10 69.3 51 62.7
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 1.6e-10 68.9 48 64.6
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 2.1e-10 68.6 48 66.7
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 2.1e-10 68.6 48 66.7
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 2.8e-10 68.2 48 64.6
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 2.8e-10 68.2 48 66.7
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 2.8e-10 68.2 48 66.7
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 2.8e-10 68.2 48 66.7
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 2.8e-10 68.2 48 66.7
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 2.8e-10 68.2 48 64.6
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 3.6e-10 67.8 48 64.6
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 3.6e-10 67.8 51 60.8
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 3.6e-10 67.8 48 64.6
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 3.6e-10 67.8 48 64.6
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 4.7e-10 67.4 51 62.7
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 4.7e-10 67.4 50 62.0
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 4.7e-10 67.4 48 60.4
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 6.1e-10 67.0 58 60.3
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 8.0e-10 66.6 51 58.8
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 1.0e-09 66.2 50 64.0
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 1.0e-09 66.2 48 62.5
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 1.0e-09 66.2 51 60.8
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 1.0e-09 66.2 48 62.5
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 1.0e-09 66.2 48 64.6
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 1.4e-09 65.9 56 55.4
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.8e-09 65.5 51 52.9
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 2.3e-09 65.1 48 64.6
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 3.1e-09 64.7 48 58.3
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 3.1e-09 64.7 49 59.2
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 3.1e-09 64.7 41 68.3
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 3.1e-09 64.7 51 58.8
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 3.1e-09 64.7 48 64.6
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 5.2e-09 63.9 48 60.4
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 8.9e-09 63.2 48 60.4
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 2.0e-08 62.0 51 58.8
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 3.4e-08 61.2 48 56.2
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 3.4e-08 61.2 51 49.0
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 4.4e-08 60.8 51 54.9
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 4.4e-08 60.8 51 58.8
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 7.5e-08 60.1 48 58.3
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 7.5e-08 60.1 51 54.9
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 9.8e-08 59.7 48 58.3
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 9.8e-08 59.7 51 49.0
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 1.7e-07 58.9 51 49.0
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 2.2e-07 58.5 50 52.0
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 2.2e-07 58.5 48 54.2
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 2.2e-07 58.5 51 51.0
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 6.4e-07 57.0 51 47.1
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 6.4e-07 57.0 51 49.0
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 8.3e-07 56.6 50 52.0
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 4.1e-06 54.3 60 43.3


User provided reference genes

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