Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007056 Daucus carota HOM05D002002 ORTHO05D008797 0.0e+00 1565.8 939 100.0
DCAR_031153 Daucus carota HOM05D002002 ORTHO05D008797 7.3e-189 665.2 749 55.8
Dinv15235 Davidia involucrata HOM05D002002 ORTHO05D008797 7.2e-128 462.6 794 42.2
Dinv24786 Davidia involucrata HOM05D002002 ORTHO05D008797 4.3e-125 453.4 749 43.9
Actinidia15094 Actinidia chinensis HOM05D002002 ORTHO05D008797 4.8e-100 370.2 794 39.9
Thecc.02G259600 Theobroma cacao HOM05D002002 ORTHO05D008797 7.0e-91 339.7 813 36.2
Cpa.g.sc33.18 Carica papaya HOM05D002002 ORTHO05D008797 5.9e-90 336.7 787 39.1
Migut.K00597 Erythranthe guttata HOM05D002002 ORTHO05D008797 2.2e-89 334.7 766 39.2
Phvul.003G065200 Phaseolus vulgaris HOM05D002002 ORTHO05D008797 2.2e-89 334.7 764 38.6
GSVIVG01005756001 Vitis vinifera HOM05D002002 ORTHO05D008797 5.0e-89 333.6 564 42.7
CSS0037172 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D008797 4.2e-88 330.5 802 36.9
Cfa009210 Carpinus fangiana HOM05D002002 ORTHO05D008797 9.4e-88 329.3 785 37.2
Gohir.A04G136700 Gossypium hirsutum HOM05D002002 ORTHO05D008797 9.4e-88 329.3 758 38.1
Nitab4.5_0000007g0090 Nicotiana tabacum HOM05D002002 ORTHO05D008797 2.7e-87 327.8 780 37.1
Atru.chr11.2102 Acer truncatum HOM05D002002 ORTHO05D008797 3.0e-86 324.3 793 35.8
CiPaw.05G182600 Carya illinoinensis HOM05D002002 ORTHO05D008797 1.2e-85 322.4 784 37.6
QL03p058108 Quercus lobata HOM05D002002 ORTHO05D008797 1.2e-85 322.4 707 37.6
TAR374G0715 Trochodendron aralioides HOM05D002002 ORTHO05D008797 5.7e-85 320.1 684 38.6
Gohir.D04G179800 Gossypium hirsutum HOM05D002002 ORTHO05D008797 7.5e-85 319.7 792 37.2
Glyma.18G143900 Glycine max HOM05D002002 ORTHO05D008797 1.7e-84 318.5 785 35.5
ECA233G4520 Erigeron canadensis HOM05D002002 ORTHO05D008797 2.2e-84 318.2 732 38.0
Gorai.012G173000 Gossypium raimondii HOM05D002002 ORTHO05D008797 3.7e-84 317.4 791 37.2
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 1.2e-82 312.4 794 36.8
ClCG05G025730 Citrullus lanatus HOM05D002002 ORTHO05D008797 2.7e-82 311.2 802 35.8
Duzib251G0042 Durio zibethinus HOM05D002002 ORTHO05D008797 3.5e-82 310.8 795 35.1
Nitab4.5_0009240g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008797 4.5e-82 310.5 705 39.0
Ciclev10030634m.g Citrus clementina HOM05D002002 ORTHO05D008797 1.0e-81 309.3 781 36.4
CAN.G832.3 Capsicum annuum HOM05D002002 ORTHO05D008797 5.0e-81 307.0 783 36.8
AUR62005461 Chenopodium quinoa HOM05D002002 ORTHO05D008797 8.6e-81 306.2 777 34.6
Sopen05g008360 Solanum pennellii HOM05D002002 ORTHO05D008797 1.1e-80 305.8 775 37.4
Sed0005394 Sechium edule HOM05D002002 ORTHO05D008797 1.9e-80 305.1 785 35.4
MELO3C011952.2 Cucumis melo HOM05D002002 ORTHO05D008711 2.5e-80 304.7 783 36.8
Duzib248G0209 Durio zibethinus HOM05D002002 ORTHO05D008797 2.5e-80 304.7 800 35.1
Potri.010G046000 Populus trichocarpa HOM05D002002 ORTHO05D008797 4.7e-79 300.4 795 36.2
AUR62024280 Chenopodium quinoa HOM05D002002 ORTHO05D008797 2.3e-78 298.1 786 35.5
Peaxi162Scf00128g00134 Petunia axillaris HOM05D002002 ORTHO05D008797 1.2e-77 295.8 817 35.6
Glyma.08G282400 Glycine max HOM05D002002 ORTHO05D008797 2.6e-77 294.7 794 38.8
Nn4g22624 Nelumbo nucifera HOM05D002002 ORTHO05D008797 7.5e-77 293.1 802 36.0
Lj4g0017193 Lotus japonicus HOM05D002002 ORTHO05D008797 1.7e-76 292.0 777 35.4
Manes.13G024600 Manihot esculenta HOM05D002002 ORTHO05D008797 1.7e-76 292.0 795 35.7
Psat4g115320 Pisum sativum HOM05D002002 ORTHO05D008797 2.2e-76 291.6 678 36.9
Lalb_Chr16g0392181 Lupinus albus HOM05D002002 ORTHO05D008797 3.7e-76 290.8 824 36.0
SGA_v2.0_scaffold476G52131 Striga asiatica HOM05D002002 ORTHO05D008797 1.8e-75 288.5 701 37.2
CsaV3_5G031140 Cucumis sativus L. HOM05D002002 ORTHO05D008797 5.4e-75 287.0 789 35.6
FAN17G1038 Fragaria x ananassa HOM05D002002 ORTHO05D008711 5.4e-75 287.0 775 35.0
RcHm_v2.0_Chr4g0432951 Rosa chinensis HOM05D002002 ORTHO05D008797 9.2e-75 286.2 769 34.1
Eucgr.H02500 Eucalyptus grandis HOM05D002002 ORTHO05D008797 1.6e-74 285.4 829 32.4
arahy.Tifrunner.gnm1.ann1.PHTA8N Arachis hypogaea HOM05D002002 ORTHO05D008711 4.6e-74 283.9 787 37.1
vmacro16196 Vaccinium macrocarpon HOM05D002002 ORTHO05D008797 2.3e-73 281.6 725 38.5
FvH4_4g25541 Fragaria vesca HOM05D002002 ORTHO05D008797 3.9e-73 280.8 773 34.5
Sabra08G0141500 Salix brachista HOM05D002002 ORTHO05D008797 3.9e-73 280.8 796 35.4
MD16G1102300 Malus domestica HOM05D002002 ORTHO05D008797 1.1e-72 279.3 759 35.7
Aqoxy3G01206 Aquilegia oxysepala HOM05D002002 ORTHO05D008797 1.2e-71 275.8 797 33.8
CANSAT01G0132 Cannabis sativa HOM05D002002 ORTHO05D008797 4.7e-71 273.9 714 34.3
EL10Ac6g13807 Beta vulgaris HOM05D002002 ORTHO05D008797 1.0e-70 272.7 741 34.8
Lalb_Chr05g0228431 Lupinus albus HOM05D002002 ORTHO05D008797 1.8e-70 271.9 719 36.4
Oeu029877.3 Olea europaea HOM05D002002 ORTHO05D008797 2.3e-70 271.6 715 37.2
Oeu059906.4 Olea europaea HOM05D002002 ORTHO05D008797 2.3e-70 271.6 819 33.2
HanXRQChr08g0208141 Helianthus annuus HOM05D002002 ORTHO05D008797 1.5e-69 268.9 664 38.3
Sc11g0000970 Simmondsia chinensis HOM05D002002 ORTHO05D008797 2.0e-69 268.5 700 36.1
PGR119G0425 Punica granatum HOM05D002002 ORTHO05D008797 5.8e-69 266.9 767 34.0
SalBow2G1965 Salvia bowleyana HOM05D002002 ORTHO05D008797 6.4e-68 263.5 807 33.8
arahy.Tifrunner.gnm1.ann1.YSSX7I Arachis hypogaea HOM05D002002 ORTHO05D008797 1.1e-67 262.7 793 35.8
Potri.008G186900 Populus trichocarpa HOM05D002002 ORTHO05D008797 5.4e-67 260.4 795 34.3
MD13G1101700 Malus domestica HOM05D002002 ORTHO05D008797 4.6e-66 257.3 731 35.3
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 7.8e-66 256.5 691 35.9
Prupe.1G244100 Prunus persica HOM05D002002 ORTHO05D008797 1.0e-65 256.1 578 38.4
PSO017G3282 Papaver somniferum HOM05D002002 ORTHO05D008797 3.0e-65 254.6 791 32.9
Nn3g16709 Nelumbo nucifera HOM05D002002 ORTHO05D008797 2.1e-63 248.4 803 33.1
PSO478G2109 Papaver somniferum HOM05D002002 ORTHO05D008797 2.8e-63 248.1 745 33.4
Hund25388 Selenicereus undatus HOM05D002002 ORTHO05D008797 3.6e-63 247.7 837 31.5
Rhsim12G0110400 Rhododendron simsii HOM05D002002 ORTHO05D008797 1.8e-62 245.4 562 39.7
TAR622G0079 Trochodendron aralioides HOM05D002002 ORTHO05D008797 8.9e-62 243.0 757 33.6
TWI75G1475 Tripterygium wilfordii HOM05D002002 ORTHO05D008797 9.8e-61 239.6 821 31.2
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 3.2e-59 234.6 632 35.4
TPR.G17755 Trifolium pratense HOM05D002002 ORTHO05D008711 7.8e-58 229.9 491 38.7
FAN22G2309 Fragaria x ananassa HOM05D002002 ORTHO05D008797 2.5e-56 224.9 621 35.3
ATR0824G114 Amborella trichopoda HOM05D002002 ORTHO05D008797 2.1e-55 221.9 793 31.7
COL.COLO4_24277 Corchorus olitorius HOM05D002002 ORTHO05D008797 2.3e-54 218.4 633 34.3
Aa31LG4G10340 Aethionema arabicum HOM05D002002 ORTHO05D008711 8.9e-54 216.5 776 31.3
AL2G30050 Arabidopsis lyrata HOM05D002002 ORTHO05D008797 4.1e-51 207.6 776 30.4
CARHR063850 Cardamine hirsuta HOM05D002002 ORTHO05D008797 8.6e-49 199.9 750 31.9
SGA_v2.0_scaffold98G29360 Striga asiatica HOM05D002002 ORTHO05D008797 7.3e-48 196.8 424 37.5
Sp5g25780 Schrenkiella parvula HOM05D002002 ORTHO05D008797 1.9e-43 182.2 776 30.0
Cc11_g15720 Coffea canephora HOM05D002002 ORTHO05D008797 2.7e-42 178.3 771 29.6
SEGI_21221 Sequoiadendron giganteum HOM05D002002 ORTHO05D008797 1.3e-39 169.5 766 29.0
Thhalv10018098m.g Eutrema salsugineum HOM05D002002 ORTHO05D008797 4.0e-38 164.5 819 29.2
SEGI_37990 Sequoiadendron giganteum HOM05D002002 ORTHO05D008797 8.4e-36 156.8 681 29.1
HPP92_005414 Vanilla planifolia HOM05D002002 ORTHO05D008797 2.1e-34 152.1 544 30.1
Lj6A812T43 Lonicera japonica HOM05D002002 ORTHO05D008797 1.0e-33 149.8 360 35.3
Os04g0661700 Oryza sativa ssp. japonica HOM05D002002 ORTHO05D008797 1.0e-33 149.8 787 28.6
A02p16740 Brassica napus HOM05D002002 ORTHO05D008797 8.7e-33 146.7 746 29.2
AT1G70620 Arabidopsis thaliana HOM05D002002 ORTHO05D008797 1.1e-32 146.4 506 32.4
TPR.G3029 Trifolium pratense HOM05D002002 ORTHO05D008797 1.6e-31 142.5 478 32.2
BcaC03g15213 Brassica carinata HOM05D002002 ORTHO05D008797 1.8e-30 139.0 522 32.6
C02p28000 Brassica napus HOM05D002002 ORTHO05D008797 1.8e-30 139.0 522 32.6
BraA02t06728Z Brassica rapa HOM05D002002 ORTHO05D008797 2.6e-29 135.2 851 27.0
CDE07G1782 Ceratophyllum demersum HOM05D002002 ORTHO05D008797 1.7e-28 132.5 775 26.7
BolC2t08843H Brassica oleracea HOM05D002002 ORTHO05D008797 1.9e-27 129.0 540 31.3
Carub.0002s1735 Capsella rubella HOM05D002002 ORTHO05D008797 7.9e-26 123.6 549 31.3
unitig_26.g10348 Utricularia gibba HOM05D002002 ORTHO05D008797 1.8e-22 112.5 702 28.1
TPR.G3025 Trifolium pratense HOM05D002002 ORTHO05D008797 2.6e-21 108.6 254 35.4
BcaB05g24599 Brassica carinata HOM05D002002 ORTHO05D008797 7.1e-19 100.5 756 26.5
Mapoly0026s0020 Marchantia polymorpha HOM05D002002 ORTHO05D008797 1.0e-17 96.7 275 38.2
Sed0026296 Sechium edule HOM05D002002 ORTHO05D008797 6.7e-17 94.0 376 28.5
Solyc05g013490.4 Solanum lycopersicum HOM05D002002 ORTHO05D008797 4.3e-16 91.3 235 37.4
Zm00001eb067460 Zea mays HOM05D002002 ORTHO05D008797 9.6e-16 90.1 444 29.7
Pp3c22_14720 Physcomitrium patens HOM05D002002 ORTHO05D008797 1.2e-13 83.2 514 29.0
TPR.G2569 Trifolium pratense HOM05D002002 ORTHO05D008797 4.5e-13 81.3 142 41.5
unitig_26.g10410 Utricularia gibba HOM05D002002 ORTHO05D008797 2.5e-11 75.5 190 36.8
TPR.G1066 Trifolium pratense HOM05D002002 ORTHO05D008797 2.3e-09 68.9 181 35.4
TPR.G3084 Trifolium pratense HOM05D002002 ORTHO05D012248 2.5e-08 65.5 106 45.3
TPR.G24664 Trifolium pratense HOM05D002002 ORTHO05D008797 6.3e-07 60.8 76 50.0


User provided reference genes

Program Settings