Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 2.9e-58 228.4 119 100.0
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 7.2e-25 117.5 118 57.6
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 2.7e-24 115.5 117 54.7
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 1.9e-22 109.4 117 51.3
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 4.3e-22 108.2 117 53.0
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 2.8e-21 105.5 117 49.6
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 1.1e-20 103.6 91 57.1
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 1.8e-20 102.8 118 50.8
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 4.1e-20 101.7 119 51.3
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 1.5e-19 99.8 96 55.2
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 3.4e-19 98.6 88 55.7
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 7.7e-19 97.4 112 48.2
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 1.0e-18 97.1 122 50.0
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 1.0e-18 97.1 102 51.0
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 2.9e-18 95.5 117 47.0
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 5.0e-18 94.7 94 54.3
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 6.5e-18 94.4 117 46.2
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 6.5e-18 94.4 90 53.3
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 8.5e-18 94.0 104 49.0
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 1.1e-17 93.6 93 53.8
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.1e-17 93.6 81 58.0
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 1.4e-17 93.2 87 57.5
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.4e-17 93.2 115 47.8
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.4e-17 93.2 115 47.8
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 1.9e-17 92.8 81 58.0
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.9e-17 92.8 81 58.0
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 2.5e-17 92.4 81 56.8
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 2.5e-17 92.4 124 46.8
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 3.2e-17 92.0 103 49.5
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 3.2e-17 92.0 119 47.1
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 4.2e-17 91.7 85 56.5
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 5.5e-17 91.3 118 44.9
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 7.2e-17 90.9 85 56.5
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 7.2e-17 90.9 85 56.5
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 7.2e-17 90.9 85 56.5
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 7.2e-17 90.9 82 56.1
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 9.4e-17 90.5 105 47.6
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 1.2e-16 90.1 122 46.7
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 1.2e-16 90.1 118 44.1
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 1.6e-16 89.7 85 55.3
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 1.6e-16 89.7 115 48.7
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 6.1e-16 87.8 60 66.7
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 6.1e-16 87.8 119 45.4
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 7.9e-16 87.4 81 56.8
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 1.0e-15 87.0 125 46.4
Lsat_1_v5_gn_9_107661 Lactuca sativa HOM05D003899 ORTHO05D003655 1.4e-15 86.7 91 51.6
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 1.8e-15 86.3 91 48.4
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 5.1e-15 84.7 116 43.1
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 5.1e-15 84.7 88 54.5
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 6.7e-15 84.3 85 54.1
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 8.8e-15 84.0 114 46.5
ECA246G5022 Erigeron canadensis HOM05D003899 ORTHO05D003655 1.5e-14 83.2 90 46.7
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 2.0e-14 82.8 119 44.5
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 2.5e-14 82.4 81 51.9
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 2.5e-14 82.4 91 50.5
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 2.5e-14 82.4 85 52.9
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 3.3e-14 82.0 85 52.9
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 3.3e-14 82.0 84 53.6
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 4.3e-14 81.6 80 52.5
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 4.3e-14 81.6 103 41.7
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 4.3e-14 81.6 95 46.3
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 5.7e-14 81.3 87 52.9
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 7.4e-14 80.9 108 45.4
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 1.3e-13 80.1 85 51.8
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.7e-13 79.7 110 45.5
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 1.7e-13 79.7 124 44.4
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 1.7e-13 79.7 104 42.3
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 1.7e-13 79.7 72 55.6
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 2.2e-13 79.3 116 43.1
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 2.2e-13 79.3 82 52.4
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 2.8e-13 79.0 90 48.9
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 4.8e-13 78.2 92 44.6
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 4.8e-13 78.2 92 44.6
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 4.8e-13 78.2 79 49.4
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 4.8e-13 78.2 97 44.3
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 4.8e-13 78.2 123 43.1
MELO3C023688.2 Cucumis melo HOM05D003899 ORTHO05D003655 6.3e-13 77.8 95 44.2
QL02p025328 Quercus lobata HOM05D003899 ORTHO05D003655 6.3e-13 77.8 76 51.3
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 6.3e-13 77.8 76 55.3
Sed0020885 Sechium edule HOM05D003899 ORTHO05D003655 8.2e-13 77.4 89 47.2
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 1.1e-12 77.0 108 40.7
HanXRQChr05g0161081 Helianthus annuus HOM05D003899 ORTHO05D003655 1.1e-12 77.0 94 47.9
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 1.4e-12 76.6 84 50.0
ECA246G3613 Erigeron canadensis HOM05D003899 ORTHO05D003655 1.4e-12 76.6 99 42.4
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 1.8e-12 76.3 106 42.5
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 1.8e-12 76.3 85 47.1
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 2.4e-12 75.9 86 45.3
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 3.1e-12 75.5 73 53.4
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 4.1e-12 75.1 104 42.3
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 4.1e-12 75.1 83 47.0
Cpa.g.sc49.66 Carica papaya HOM05D003899 ORTHO05D003655 6.9e-12 74.3 86 45.3
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 6.9e-12 74.3 83 48.2
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 9.1e-12 73.9 97 40.2
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 1.2e-11 73.6 106 41.5
ECA238G1798 Erigeron canadensis HOM05D003899 ORTHO05D003655 1.2e-11 73.6 96 45.8
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 3.4e-11 72.0 126 41.3
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 4.5e-11 71.6 81 44.4
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 5.9e-11 71.2 82 40.2
CiPaw.15G021500 Carya illinoinensis HOM05D003899 ORTHO05D003655 5.9e-11 71.2 75 48.0
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 5.9e-11 71.2 81 45.7
Psat6g033800 Pisum sativum HOM05D003899 ORTHO05D003655 7.7e-11 70.9 109 35.8
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 1.3e-10 70.1 99 41.4
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 1.3e-10 70.1 96 44.8
DCAR_001362 Daucus carota HOM05D003899 ORTHO05D003655 1.3e-10 70.1 59 55.9
CSS0000461 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 1.7e-10 69.7 72 55.6
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 2.2e-10 69.3 91 38.5
HanXRQChr08g0232541 Helianthus annuus HOM05D003899 ORTHO05D003655 2.2e-10 69.3 87 47.1
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 2.2e-10 69.3 53 56.6
Nitab4.5_0002974g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 2.2e-10 69.3 108 36.1
Phvul.001G073300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 2.2e-10 69.3 58 53.4
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 3.8e-10 68.6 85 42.4
CSS0023777 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 6.5e-10 67.8 60 60.0
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 6.5e-10 67.8 76 50.0
Lalb_Chr23g0271351 Lupinus albus HOM05D003899 ORTHO05D003655 6.5e-10 67.8 106 41.5
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 6.5e-10 67.8 83 44.6
Phvul.001G052300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 8.5e-10 67.4 72 47.2
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 1.1e-09 67.0 71 52.1
Glyma.14G122000 Glycine max HOM05D003899 ORTHO05D003655 1.4e-09 66.6 70 48.6
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 1.4e-09 66.6 83 43.4
PSO126G0001 Papaver somniferum HOM05D003899 ORTHO05D003655 1.9e-09 66.2 69 52.2
Nitab4.5_0001140g0230 Nicotiana tabacum HOM05D003899 ORTHO05D003655 2.5e-09 65.9 76 42.1
Nitab4.5_0015327g0010 Nicotiana tabacum HOM05D003899 ORTHO05D003655 2.5e-09 65.9 100 37.0
Nitab4.5_0008388g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 3.2e-09 65.5 67 49.3
TPR.G33315 Trifolium pratense HOM05D003899 ORTHO05D003655 3.2e-09 65.5 63 50.8
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 4.2e-09 65.1 71 43.7
Sopen07g030130 Solanum pennellii HOM05D003899 ORTHO05D003655 4.2e-09 65.1 53 56.6
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 4.2e-09 65.1 58 53.4
Hma1.2p1_0528F.1_g173010 Hydrangea macrophylla HOM05D003899 ORTHO05D003655 9.4e-09 63.9 66 47.0
ClCG09G009790 Citrullus lanatus HOM05D003899 ORTHO05D003655 1.2e-08 63.5 98 35.7
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 2.1e-08 62.8 89 40.4
Migut.M00600 Erythranthe guttata HOM05D003899 ORTHO05D003655 2.7e-08 62.4 82 41.5
PGSC0003DMG400001039 Solanum tuberosum HOM05D003899 ORTHO05D003655 3.6e-08 62.0 54 53.7
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 6.1e-08 61.2 63 42.9
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 6.1e-08 61.2 96 40.6
Sp1g41920 Schrenkiella parvula HOM05D003899 ORTHO05D003655 1.0e-07 60.5 75 37.3
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 1.0e-07 60.5 92 32.6
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 1.8e-07 59.7 59 44.1
CAN.G833.2 Capsicum annuum HOM05D003899 ORTHO05D003655 3.0e-07 58.9 79 43.0
Actinidia15159 Actinidia chinensis HOM05D000043 ORTHO05D002577 5.1e-07 58.2 57 52.6
Thecc.08G065300 Theobroma cacao HOM05D009119 ORTHO05D003655 6.7e-07 57.8 94 39.4
TWI79G1413 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 6.7e-07 57.8 56 44.6
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 8.8e-07 57.4 87 42.5
Carub.0001s4477 Capsella rubella HOM05D003899 ORTHO05D003655 1.1e-06 57.0 63 39.7
CsaV3_7G024950 Cucumis sativus L. HOM05D000219 ORTHO05D000226 1.1e-06 57.0 100 37.0
VMungo0647G2071 Vigna mungo HOM05D003899 ORTHO05D003655 2.0e-06 56.2 58 44.8
AL1G64600 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 2.6e-06 55.8 63 39.7
SalBow6G1670 Salvia bowleyana HOM05D003899 ORTHO05D003655 2.6e-06 55.8 59 52.5
COL.COLO4_11973 Corchorus olitorius HOM05D009119 ORTHO05D003655 3.3e-06 55.5 79 41.8
CAN.G1012.7 Capsicum annuum HOM05D003899 ORTHO05D003655 4.4e-06 55.1 81 37.0
PGR002G0009 Punica granatum HOM05D003899 ORTHO05D003655 4.4e-06 55.1 79 40.5
SGA_v2.0_scaffold25G11158 Striga asiatica HOM05D003899 ORTHO05D003655 4.4e-06 55.1 113 36.3
Ah.05g167520 Amaranthus hybridus HOM05D000219 ORTHO05D000226 5.7e-06 54.7 111 30.6
THA.LOC104800071 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 5.7e-06 54.7 78 33.3
Duzib093G1486 Durio zibethinus HOM05D009119 ORTHO05D003655 7.4e-06 54.3 110 37.3
Peaxi162Scf00263g00033 Petunia axillaris HOM05D003899 ORTHO05D003655 7.4e-06 54.3 87 33.3


User provided reference genes

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