Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 1.0e-111 406.8 209 100.0
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 1.0e-103 380.2 209 90.4
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 2.0e-102 375.9 207 90.8
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 2.0e-102 375.9 207 90.3
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 2.6e-102 375.6 206 89.8
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 3.3e-102 375.2 209 89.0
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 5.7e-102 374.4 207 90.3
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 7.4e-102 374.0 205 91.2
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 7.4e-102 374.0 207 89.9
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 1.7e-101 372.9 205 91.2
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.7e-101 372.9 207 90.3
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.7e-101 372.9 207 90.3
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 2.2e-101 372.5 207 89.4
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 4.8e-101 371.3 205 89.8
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 6.3e-101 370.9 207 87.9
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 6.3e-101 370.9 207 89.4
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 6.3e-101 370.9 207 89.4
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 6.3e-101 370.9 207 89.4
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 6.3e-101 370.9 207 89.4
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 8.2e-101 370.5 207 89.9
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 8.2e-101 370.5 205 89.8
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 8.2e-101 370.5 207 89.9
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 8.2e-101 370.5 205 89.8
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 1.1e-100 370.2 205 89.8
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 1.1e-100 370.2 207 89.4
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 1.4e-100 369.8 205 89.8
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 1.4e-100 369.8 205 89.8
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 1.4e-100 369.8 207 89.9
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 1.4e-100 369.8 207 89.4
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 1.4e-100 369.8 207 89.4
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 1.4e-100 369.8 207 88.9
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 1.8e-100 369.4 207 87.9
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 1.8e-100 369.4 207 88.9
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 3.1e-100 368.6 207 88.9
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 3.1e-100 368.6 207 88.4
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 3.1e-100 368.6 207 87.9
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 3.1e-100 368.6 207 89.4
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 5.3e-100 367.9 204 89.7
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 5.3e-100 367.9 207 87.4
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 7.0e-100 367.5 207 88.9
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 9.1e-100 367.1 207 87.9
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 9.1e-100 367.1 209 89.0
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 1.2e-99 366.7 207 88.4
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 1.2e-99 366.7 205 88.8
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.2e-99 366.7 207 87.9
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 1.6e-99 366.3 207 88.4
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 1.6e-99 366.3 207 87.4
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 2.0e-99 365.9 207 88.4
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.0e-99 365.9 205 88.8
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 2.6e-99 365.5 207 88.4
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 2.6e-99 365.5 205 88.8
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 2.6e-99 365.5 207 87.4
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 3.5e-99 365.2 207 88.4
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 3.5e-99 365.2 207 87.9
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 4.5e-99 364.8 207 87.9
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 4.5e-99 364.8 207 87.0
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 5.9e-99 364.4 207 87.9
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 5.9e-99 364.4 207 87.9
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 7.7e-99 364.0 207 87.4
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 7.7e-99 364.0 207 87.9
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 1.3e-98 363.2 207 88.4
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 1.7e-98 362.8 207 86.5
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 1.7e-98 362.8 207 87.9
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 5.0e-98 361.3 207 87.9
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 8.5e-98 360.5 206 86.9
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 1.1e-97 360.1 206 86.9
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 1.5e-97 359.8 207 87.0
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.5e-97 359.8 212 86.3
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 2.5e-97 359.0 208 86.1
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 2.5e-97 359.0 208 86.1
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 5.5e-97 357.8 208 85.6
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 5.5e-97 357.8 202 88.1
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 7.2e-97 357.5 207 87.0
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 9.4e-97 357.1 206 86.9
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 1.2e-96 356.7 208 85.6
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 2.1e-96 355.9 208 85.6
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 2.1e-96 355.9 208 85.6
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 2.1e-96 355.9 216 83.3
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 2.7e-96 355.5 206 87.4
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 3.6e-96 355.1 204 87.3
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 4.7e-96 354.8 207 83.6
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 1.8e-95 352.8 204 86.8
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 2.3e-95 352.4 207 85.0
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 2.3e-95 352.4 208 85.1
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 3.0e-95 352.1 208 84.6
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 3.0e-95 352.1 208 84.6
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 4.0e-95 351.7 208 84.6
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 5.2e-95 351.3 208 84.6
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 8.8e-95 350.5 208 84.6
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.2e-94 350.1 207 82.6
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.5e-94 349.7 209 84.7
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.5e-94 349.7 209 84.7
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.5e-94 349.7 207 82.1
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 2.6e-94 349.0 208 83.7
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 3.3e-94 348.6 208 83.2
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 5.7e-94 347.8 209 84.2
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 1.3e-93 346.7 206 85.9
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 1.3e-93 346.7 207 85.0
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 8.3e-93 344.0 195 87.7
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 1.8e-92 342.8 206 84.5
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 5.3e-92 341.3 209 82.3
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 6.5e-90 334.3 208 81.2
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 3.6e-88 328.6 178 91.0
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 8.8e-87 323.9 207 80.7
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 3.4e-86 322.0 201 76.6
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 5.7e-86 321.2 178 88.8
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 9.8e-86 320.5 205 81.5
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 1.3e-85 320.1 179 87.7
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 1.7e-85 319.7 179 87.7
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 8.3e-85 317.4 189 83.6
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 1.8e-84 316.2 178 88.2
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 2.3e-82 309.3 177 85.3
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 3.8e-82 308.5 207 79.7
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 5.0e-82 308.1 209 79.4
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 2.2e-77 292.7 204 74.5
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 7.8e-75 284.3 167 83.8
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 2.5e-73 279.3 156 88.5
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 1.6e-72 276.6 156 87.2
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 4.7e-72 275.0 206 70.9
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 9.2e-68 260.8 196 63.3
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 7.8e-67 257.7 202 60.9
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 3.9e-66 255.4 231 61.5
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 8.6e-66 254.2 204 61.3
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 2.1e-64 249.6 200 59.0
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.5e-62 243.4 205 63.9
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 1.6e-59 233.4 168 73.8
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 2.1e-59 233.0 207 53.6
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 1.4e-55 220.3 132 87.1
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 8.9e-55 217.6 120 88.3
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 4.4e-54 215.3 205 54.6
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 4.1e-52 208.8 202 54.0
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 1.0e-50 204.1 204 48.5
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.3e-50 203.8 151 71.5
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 2.8e-48 196.1 196 47.4
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 1.4e-47 193.7 148 67.6
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 7.6e-46 188.0 208 53.8
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 2.1e-43 179.9 229 45.0
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 5.6e-41 171.8 156 63.5
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 4.9e-37 158.7 98 79.6
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 2.4e-36 156.4 207 46.4
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 1.8e-31 140.2 187 39.6
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 9.0e-31 137.9 205 44.4
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 8.4e-29 131.3 96 76.0
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 8.4e-29 131.3 73 87.7
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 2.7e-27 126.3 99 68.7
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 3.5e-27 125.9 81 76.5
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 2.1e-24 116.7 92 66.3
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 3.1e-23 112.8 135 51.9
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 5.8e-22 108.6 60 83.3
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 1.4e-20 104.0 60 83.3
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 3.5e-19 99.4 82 62.2
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 1.0e-18 97.8 73 71.2
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 3.2e-12 76.3 61 60.7
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 1.0e-10 71.2 62 66.1
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 3.7e-08 62.8 38 73.7
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 1.8e-07 60.5 39 66.7
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 1.8e-07 60.5 58 63.8


User provided reference genes

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