Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006869 Daucus carota HOM05D000060 ORTHO05D000428 1.1e-78 296.6 151 100.0
DCAR_008562 Daucus carota HOM05D000060 ORTHO05D000428 1.9e-35 152.9 145 63.4
Nitab4.5_0000457g0350 Nicotiana tabacum HOM05D000060 ORTHO05D000428 6.5e-31 137.9 150 56.7
Nitab4.5_0007537g0010 Nicotiana tabacum HOM05D000060 ORTHO05D000428 4.6e-29 131.7 153 54.9
Hma1.2p1_1663F.1_g296330 Hydrangea macrophylla HOM05D000060 ORTHO05D000428 4.1e-25 118.6 144 52.1
Actinidia12263 Actinidia chinensis HOM05D000060 ORTHO05D000428 1.5e-24 116.7 147 55.8
Solyc01g091420.2 Solanum lycopersicum HOM05D000060 ORTHO05D000428 2.0e-24 116.3 153 52.9
Hma1.2p1_0660F.1_g197770 Hydrangea macrophylla HOM05D000060 ORTHO05D000428 7.7e-24 114.4 144 51.4
Peaxi162Scf00021g01519 Petunia axillaris HOM05D000060 ORTHO05D000428 1.0e-23 114.0 147 56.5
Rhsim07G0027100 Rhododendron simsii HOM05D000060 ORTHO05D000428 1.9e-22 109.8 151 48.3
Oeu037911.2 Olea europaea HOM05D000060 ORTHO05D000428 1.6e-21 106.7 150 45.3
Sopen01g037180 Solanum pennellii HOM05D000060 ORTHO05D000428 3.6e-21 105.5 154 50.6
Duzib138G0275 Durio zibethinus HOM05D000060 ORTHO05D000428 1.8e-20 103.2 145 49.0
Lj9A571T73 Lonicera japonica HOM05D000060 ORTHO05D000428 3.0e-20 102.4 141 49.6
Hund27351 Selenicereus undatus HOM05D000060 ORTHO05D000428 3.0e-20 102.4 139 49.6
CANSAT56G0462 Cannabis sativa HOM05D000060 ORTHO05D000428 6.7e-20 101.3 142 48.6
TWI14G0493 Tripterygium wilfordii HOM05D000060 ORTHO05D000428 6.7e-20 101.3 143 49.7
TAR636G1803 Trochodendron aralioides HOM05D000060 ORTHO05D000428 6.7e-20 101.3 141 48.9
CSS0046067 Camellia sinensis var. sinensis HOM05D000060 ORTHO05D000428 8.8e-20 100.9 145 48.3
GSVIVG01027621001 Vitis vinifera HOM05D000060 ORTHO05D000428 8.8e-20 100.9 130 51.5
CiPaw.01G261300 Carya illinoinensis HOM05D000060 ORTHO05D000428 1.5e-19 100.1 149 45.6
Cc02_g36620 Coffea canephora HOM05D000060 ORTHO05D000428 2.0e-19 99.8 146 45.9
COL.COLO4_12557 Corchorus olitorius HOM05D000060 ORTHO05D000428 2.6e-19 99.4 130 52.3
CSS0043669 Camellia sinensis var. sinensis HOM05D000060 ORTHO05D000428 3.3e-19 99.0 145 46.9
Manes.05G044500 Manihot esculenta HOM05D000060 ORTHO05D000428 3.3e-19 99.0 138 49.3
SalBow5G5088 Salvia bowleyana HOM05D040324 ORTHO05D000428 5.7e-19 98.2 149 43.0
Cfa001709 Carpinus fangiana HOM05D000060 ORTHO05D000428 7.4e-19 97.8 144 50.0
Dinv43719 Davidia involucrata HOM05D000060 ORTHO05D000428 9.7e-19 97.4 150 47.3
EL10Ac1g00905 Beta vulgaris HOM05D000060 ORTHO05D000428 3.7e-18 95.5 129 49.6
Duzib133G0837 Durio zibethinus HOM05D000060 ORTHO05D000428 4.8e-18 95.1 144 46.5
Gohir.A08G133900 Gossypium hirsutum HOM05D000060 ORTHO05D000428 6.3e-18 94.7 145 46.9
Gohir.D08G155100 Gossypium hirsutum HOM05D000060 ORTHO05D000428 6.3e-18 94.7 145 46.9
Gorai.004G161100 Gossypium raimondii HOM05D000060 ORTHO05D000428 6.3e-18 94.7 145 46.9
Hund17014 Selenicereus undatus HOM05D000060 ORTHO05D000428 1.1e-17 94.0 141 48.2
Potri.014G070400 Populus trichocarpa HOM05D000060 ORTHO05D000428 1.8e-17 93.2 129 47.3
Nn1g01208 Nelumbo nucifera HOM05D000060 ORTHO05D000428 2.4e-17 92.8 130 46.9
Lsat_1_v5_gn_3_132740 Lactuca sativa HOM05D000060 ORTHO05D000428 3.1e-17 92.4 147 44.9
Sed0016554 Sechium edule HOM05D000060 ORTHO05D000428 3.1e-17 92.4 145 46.2
arahy.Tifrunner.gnm1.ann1.4ZP6RH Arachis hypogaea HOM05D000060 ORTHO05D000428 4.1e-17 92.0 158 43.0
Manes.01G265300 Manihot esculenta HOM05D000060 ORTHO05D000428 5.3e-17 91.7 135 47.4
Gorai.008G114400 Gossypium raimondii HOM05D000060 ORTHO05D000428 1.2e-16 90.5 139 46.0
Thecc.01G375200 Theobroma cacao HOM05D000060 ORTHO05D000428 1.2e-16 90.5 130 47.7
SGA_v2.0_scaffold153G37019 Striga asiatica HOM05D000060 ORTHO05D000428 1.6e-16 90.1 145 46.2
Glyma.03G023000 Glycine max HOM05D000060 ORTHO05D000428 2.0e-16 89.7 148 43.2
HanXRQChr14g0452811 Helianthus annuus HOM05D000060 ORTHO05D000428 2.0e-16 89.7 147 45.6
Gohir.A12G101966 Gossypium hirsutum HOM05D000060 ORTHO05D000428 2.6e-16 89.4 139 45.3
Sabra14G0050100 Salix brachista HOM05D000060 ORTHO05D000428 2.6e-16 89.4 138 45.7
PGSC0003DMG401012772 Solanum tuberosum HOM05D000060 ORTHO05D000428 2.6e-16 89.4 114 50.9
Gohir.D12G105100 Gossypium hirsutum HOM05D000060 ORTHO05D000428 3.5e-16 89.0 139 45.3
Zm00001eb398670 Zea mays HOM05D000060 ORTHO05D000428 4.5e-16 88.6 144 43.1
Carub.0006s3700 Capsella rubella HOM05D000060 ORTHO05D000428 5.9e-16 88.2 137 43.1
TWI59G1248 Tripterygium wilfordii HOM05D000060 ORTHO05D000428 5.9e-16 88.2 147 44.9
Haze_16824 Corylus avellana HOM05D000060 ORTHO05D000428 7.7e-16 87.8 144 45.8
Oeu035607.1 Olea europaea HOM05D000060 ORTHO05D000428 7.7e-16 87.8 151 45.7
ClCG06G000340 Citrullus lanatus HOM05D000060 ORTHO05D000428 1.3e-15 87.0 142 45.8
CsaV3_6G006130 Cucumis sativus L. HOM05D000060 ORTHO05D000428 1.3e-15 87.0 142 45.8
Ciclev10021992m.g Citrus clementina HOM05D000060 ORTHO05D000428 1.7e-15 86.7 139 46.8
Sabra02G0117800 Salix brachista HOM05D000060 ORTHO05D000428 2.2e-15 86.3 136 47.8
PGR042G0998 Punica granatum HOM05D000060 ORTHO05D000428 2.9e-15 85.9 132 43.9
CARHR248270 Cardamine hirsuta HOM05D000060 ORTHO05D000428 3.8e-15 85.5 135 40.0
HanXRQChr04g0122391 Helianthus annuus HOM05D000060 ORTHO05D000428 5.0e-15 85.1 144 43.8
Aqoxy7G00602 Aquilegia oxysepala HOM05D000060 ORTHO05D000428 6.5e-15 84.7 138 44.2
Potri.002G149000 Populus trichocarpa HOM05D000060 ORTHO05D000428 8.5e-15 84.3 137 46.7
A09p00660 Brassica napus HOM05D000060 ORTHO05D000428 3.2e-14 82.4 77 57.1
C09p00200 Brassica napus HOM05D000060 ORTHO05D000428 3.2e-14 82.4 77 57.1
BraA09t35694Z Brassica rapa HOM05D000060 ORTHO05D000428 3.2e-14 82.4 77 57.1
Thhalv10028937m.g Eutrema salsugineum HOM05D000060 ORTHO05D000428 3.2e-14 82.4 132 41.7
CAN.G388.4 Capsicum annuum HOM05D000060 ORTHO05D000428 4.2e-14 82.0 81 59.3
MELO3C000192.2 Cucumis melo HOM05D000060 ORTHO05D000428 4.2e-14 82.0 141 44.7
FAN03G1190 Fragaria x ananassa HOM05D000060 ORTHO05D000428 5.5e-14 81.6 144 42.4
MD02G1202500 Malus domestica HOM05D000060 ORTHO05D000428 5.5e-14 81.6 149 41.6
SGA_v2.0_scaffold95G28898 Striga asiatica HOM05D000060 ORTHO05D000428 9.4e-14 80.9 150 43.3
BcaB01g02227 Brassica carinata HOM05D000060 ORTHO05D000428 1.2e-13 80.5 77 55.8
Sp6g00280 Schrenkiella parvula HOM05D000060 ORTHO05D000428 1.2e-13 80.5 146 39.7
Atru.chr5.319 Acer truncatum HOM05D000060 ORTHO05D000428 1.6e-13 80.1 137 41.6
BcaC04g24193 Brassica carinata HOM05D000060 ORTHO05D000428 1.6e-13 80.1 77 55.8
BolC9t52955H Brassica oleracea HOM05D000060 ORTHO05D000428 1.6e-13 80.1 77 55.8
CARHR140610 Cardamine hirsuta HOM05D000060 ORTHO05D000428 1.6e-13 80.1 151 42.4
Oeu026876.1 Olea europaea HOM05D000060 ORTHO05D000428 1.6e-13 80.1 146 42.5
A02p24020 Brassica napus HOM05D000060 ORTHO05D000428 2.1e-13 79.7 142 40.1
BraA02t07396Z Brassica rapa HOM05D000060 ORTHO05D000428 2.1e-13 79.7 142 40.1
Phvul.008G075900 Phaseolus vulgaris HOM05D000060 ORTHO05D000428 2.1e-13 79.7 143 39.9
BcaB01g02203 Brassica carinata HOM05D000060 ORTHO05D000428 4.7e-13 78.6 129 41.1
ECA240G2217 Erigeron canadensis HOM05D000528 ORTHO05D000999 4.7e-13 78.6 128 44.5
BcaC04g24190 Brassica carinata HOM05D000060 ORTHO05D000428 6.1e-13 78.2 76 55.3
AL4G44590 Arabidopsis lyrata HOM05D000060 ORTHO05D000428 8.0e-13 77.8 149 40.3
BcaC03g16033 Brassica carinata HOM05D000060 ORTHO05D000428 1.4e-12 77.0 142 38.7
C02p37860 Brassica napus HOM05D000060 ORTHO05D000428 1.4e-12 77.0 142 38.7
BolC2t09802H Brassica oleracea HOM05D000060 ORTHO05D000428 1.4e-12 77.0 142 38.7
PSO782G3421 Papaver somniferum HOM05D000060 ORTHO05D000428 2.3e-12 76.3 143 42.7
Psat4g195200 Pisum sativum HOM05D000060 ORTHO05D000428 2.3e-12 76.3 128 42.2
unitig_0.g1297 Utricularia gibba HOM05D000060 ORTHO05D000428 2.3e-12 76.3 144 41.0
Glyma.01G143900 Glycine max HOM05D000060 ORTHO05D000428 3.0e-12 75.9 152 40.1
TPR.G21721 Trifolium pratense HOM05D000060 ORTHO05D000428 3.0e-12 75.9 129 41.1
RcHm_v2.0_Chr1g0350711 Rosa chinensis HOM05D000060 ORTHO05D000428 4.0e-12 75.5 140 41.4
BcaC02g12209 Brassica carinata HOM05D000060 ORTHO05D000428 5.2e-12 75.1 147 42.2
C04p06390 Brassica napus HOM05D000060 ORTHO05D000428 5.2e-12 75.1 147 42.2
BolC4t22262H Brassica oleracea HOM05D000060 ORTHO05D000428 5.2e-12 75.1 147 42.2
HanXRQChr13g0425201 Helianthus annuus HOM05D000060 ORTHO05D000428 5.2e-12 75.1 139 42.4
BcaB02g08982 Brassica carinata HOM05D000060 ORTHO05D000428 6.7e-12 74.7 147 40.8
Prupe.2G146600 Prunus persica HOM05D000060 ORTHO05D000428 6.7e-12 74.7 138 41.3
TAR629G1694 Trochodendron aralioides HOM05D000060 ORTHO05D000428 6.7e-12 74.7 131 42.0
Sp4g27450 Schrenkiella parvula HOM05D000060 ORTHO05D000428 8.8e-12 74.3 153 39.9
A05p05450 Brassica napus HOM05D000060 ORTHO05D000428 1.2e-11 73.9 147 41.5
BraA05t19515Z Brassica rapa HOM05D000060 ORTHO05D000428 2.0e-11 73.2 147 40.1
Glyma.18G221000 Glycine max HOM05D000060 ORTHO05D000428 2.6e-11 72.8 145 38.6
arahy.Tifrunner.gnm1.ann1.NJF8NY Arachis hypogaea HOM05D000060 ORTHO05D000428 3.3e-11 72.4 156 38.5
ECA236G2316 Erigeron canadensis HOM05D000060 ORTHO05D000428 3.3e-11 72.4 144 41.0
FvH4_7g11990 Fragaria vesca HOM05D000060 ORTHO05D000428 3.3e-11 72.4 73 57.5
FAN06G2205 Fragaria x ananassa HOM05D000060 ORTHO05D000428 3.3e-11 72.4 73 57.5
FAN06G2546 Fragaria x ananassa HOM05D000060 ORTHO05D000428 3.3e-11 72.4 73 57.5
FAN10G2467 Fragaria x ananassa HOM05D000060 ORTHO05D000428 3.3e-11 72.4 73 57.5
FAN10G3335 Fragaria x ananassa HOM05D000060 ORTHO05D000428 3.3e-11 72.4 73 57.5
Actinidia31414 Actinidia chinensis HOM05D000060 ORTHO05D000428 4.4e-11 72.0 69 59.4
Lj3g0018337 Lotus japonicus HOM05D000060 ORTHO05D000428 4.4e-11 72.0 144 41.7
Medtr8g036085 Medicago truncatula HOM05D000060 ORTHO05D000428 7.5e-11 71.2 130 38.5
AT2G45420 Arabidopsis thaliana HOM05D000060 ORTHO05D000428 9.7e-11 70.9 151 37.1
Zm00001eb010570 Zea mays HOM05D000060 ORTHO05D000428 9.7e-11 70.9 147 42.2
Migut.N01640 Erythranthe guttata HOM05D000060 ORTHO05D000428 1.7e-10 70.1 81 51.9
Eucgr.E01414 Eucalyptus grandis HOM05D000060 ORTHO05D000428 1.7e-10 70.1 145 41.4
FAN01G1441 Fragaria x ananassa HOM05D000060 ORTHO05D000428 1.7e-10 70.1 72 56.9
THA.LOC104817250 Tarenaya hassleriana HOM05D000060 ORTHO05D000428 1.7e-10 70.1 138 41.3
BcaC02g07094 Brassica carinata HOM05D000060 ORTHO05D000428 2.2e-10 69.7 152 38.2
C04p71550 Brassica napus HOM05D000060 ORTHO05D000428 2.2e-10 69.7 152 38.2
BolC4t28660H Brassica oleracea HOM05D000060 ORTHO05D000428 2.2e-10 69.7 152 38.2
HPP92_014967 Vanilla planifolia HOM05D000060 ORTHO05D000428 2.2e-10 69.7 129 38.8
AT4G00220 Arabidopsis thaliana HOM05D000060 ORTHO05D000428 3.7e-10 68.9 149 34.9
vmacro13393 Vaccinium macrocarpon HOM05D000060 ORTHO05D000428 6.3e-10 68.2 166 34.9
AL6G53280 Arabidopsis lyrata HOM05D000060 ORTHO05D000428 8.2e-10 67.8 149 34.2
Glyma.09G268700 Glycine max HOM05D000060 ORTHO05D000428 8.2e-10 67.8 150 36.7
THA.LOC104801990 Tarenaya hassleriana HOM05D000060 ORTHO05D000428 1.8e-09 66.6 143 37.8
VMungo1383G3439 Vigna mungo HOM05D000060 ORTHO05D000428 3.1e-09 65.9 150 38.0
A04p33810 Brassica napus HOM05D000060 ORTHO05D000428 9.1e-09 64.3 152 36.8
BraA04t18842Z Brassica rapa HOM05D000060 ORTHO05D000428 9.1e-09 64.3 152 36.8
SalBow5G0537 Salvia bowleyana HOM05D000060 ORTHO05D000428 9.1e-09 64.3 146 37.7
Thhalv10001791m.g Eutrema salsugineum HOM05D000060 ORTHO05D000428 1.2e-08 63.9 152 37.5
QL08p052181 Quercus lobata HOM05D000060 ORTHO05D000428 1.2e-08 63.9 101 44.6
Os10g0162600 Oryza sativa ssp. japonica HOM05D000060 ORTHO05D000428 1.0e-07 60.8 158 34.2
Medtr7g074990 Medicago truncatula HOM05D000060 ORTHO05D000428 2.2e-07 59.7 150 34.7
PSO478G3850 Papaver somniferum HOM05D000060 ORTHO05D000428 3.8e-07 58.9 103 41.7
Sed0004990 Sechium edule HOM05D000060 ORTHO05D000428 8.5e-07 57.8 144 35.4
Aqoxy1G00922 Aquilegia oxysepala HOM05D000060 ORTHO05D000428 3.2e-06 55.8 73 43.8
Ca_07823_v3 Cicer arietinum L. HOM05D000060 ORTHO05D000428 3.2e-06 55.8 96 40.6


User provided reference genes

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