Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 1.0e-134 483.4 245 100.0
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 1.1e-112 410.2 246 83.7
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 1.8e-99 366.3 247 76.1
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 1.2e-98 363.6 248 76.6
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 1.5e-98 363.2 246 77.2
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.5e-98 363.2 249 76.3
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 2.0e-98 362.8 250 77.2
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 2.0e-98 362.8 250 77.2
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 2.0e-98 362.8 250 75.6
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.4e-98 362.1 249 75.9
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 3.4e-98 362.1 248 79.8
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.0e-97 360.5 249 75.5
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 2.2e-97 359.4 248 75.8
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.9e-97 359.0 248 75.4
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 3.8e-97 358.6 249 73.9
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 5.0e-97 358.2 248 75.0
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 6.5e-97 357.8 257 72.4
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 8.5e-97 357.5 248 75.4
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 8.5e-97 357.5 248 75.4
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 1.4e-96 356.7 248 75.4
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 1.2e-95 353.6 250 74.4
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 4.6e-95 351.7 249 73.1
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 6.1e-95 351.3 247 73.3
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 1.3e-94 350.1 245 74.3
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 1.8e-94 349.7 248 73.4
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 3.0e-94 349.0 249 72.7
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 3.0e-94 349.0 264 70.1
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 3.0e-94 349.0 252 74.2
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 5.1e-94 348.2 244 74.2
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 1.5e-93 346.7 247 71.3
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 1.9e-93 346.3 249 71.1
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 3.3e-93 345.5 248 72.6
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.7e-93 344.7 247 70.9
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 7.4e-93 344.4 253 71.9
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 7.4e-93 344.4 253 72.3
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 9.7e-93 344.0 247 70.9
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 2.8e-92 342.4 248 72.2
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 2.8e-92 342.4 251 73.3
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 3.7e-92 342.0 243 74.1
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.8e-92 341.7 248 73.4
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 6.3e-92 341.3 246 69.9
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 6.3e-92 341.3 250 71.6
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.1e-91 340.5 255 70.2
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.8e-91 339.7 246 73.6
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 2.4e-91 339.3 251 72.1
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.4e-91 339.3 248 72.6
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.1e-91 339.0 247 70.0
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 3.1e-91 339.0 250 72.0
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 5.3e-91 338.2 246 70.7
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 6.9e-91 337.8 246 70.3
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 1.2e-90 337.0 251 71.3
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 1.5e-90 336.7 248 71.0
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.5e-90 336.7 248 72.6
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 3.4e-90 335.5 250 70.8
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 4.5e-90 335.1 248 72.2
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 5.9e-90 334.7 254 70.1
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 7.7e-90 334.3 247 71.7
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 7.7e-90 334.3 252 71.4
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 1.0e-89 334.0 250 68.8
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.0e-89 334.0 246 69.5
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 1.3e-89 333.6 243 70.8
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 1.7e-89 333.2 249 70.7
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 1.7e-89 333.2 247 71.7
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 2.9e-89 332.4 250 70.0
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.4e-88 330.1 246 69.1
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 3.2e-88 328.9 242 70.7
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.2e-88 327.8 249 71.5
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.2e-88 327.8 249 71.5
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.2e-88 327.8 249 71.5
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 7.2e-88 327.8 246 69.9
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 9.4e-88 327.4 249 71.5
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.6e-87 326.6 249 71.1
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 1.6e-87 326.6 248 71.0
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.6e-87 325.5 249 71.1
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 6.1e-87 324.7 246 68.7
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 7.9e-87 324.3 221 75.1
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.9e-87 324.3 247 69.6
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 1.0e-86 323.9 257 69.6
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.8e-86 323.2 253 69.6
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 2.3e-86 322.8 257 68.9
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 3.0e-86 322.4 237 72.2
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 3.9e-86 322.0 257 68.5
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 3.9e-86 322.0 241 68.5
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 5.1e-86 321.6 237 71.7
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 6.7e-86 321.2 246 67.9
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 1.1e-85 320.5 239 71.1
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 3.3e-85 318.9 246 70.7
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 5.7e-85 318.2 242 66.9
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 1.7e-84 316.6 243 70.8
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 2.2e-84 316.2 241 69.3
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 3.1e-83 312.4 246 65.0
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 5.3e-83 311.6 241 66.4
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 9.1e-83 310.8 238 69.7
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 9.1e-83 310.8 247 64.8
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 9.1e-83 310.8 251 67.7
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 1.2e-82 310.5 247 64.8
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 1.2e-82 310.5 247 64.0
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.5e-82 310.1 238 69.7
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 1.5e-82 310.1 252 63.5
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 2.0e-82 309.7 246 64.6
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 2.0e-82 309.7 245 65.7
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 3.4e-82 308.9 247 64.8
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 3.4e-82 308.9 245 64.5
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 4.5e-82 308.5 247 64.4
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 4.5e-82 308.5 244 65.2
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.5e-82 308.5 217 72.8
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 5.9e-82 308.1 240 65.4
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 1.3e-81 307.0 313 56.9
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.7e-81 306.6 221 72.4
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.9e-81 305.8 200 75.0
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 5.0e-81 305.1 243 64.2
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 5.0e-81 305.1 233 71.2
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 1.4e-80 303.5 253 66.8
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 2.5e-80 302.8 241 64.7
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 7.2e-80 301.2 321 54.5
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 9.4e-80 300.8 243 64.2
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 9.4e-80 300.8 242 64.0
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 1.6e-79 300.1 230 69.1
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 2.7e-79 299.3 237 69.6
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 3.6e-79 298.9 245 63.7
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.0e-78 297.4 245 62.9
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 3.0e-78 295.8 252 62.3
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 1.1e-77 293.9 246 63.8
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 1.1e-77 293.9 246 63.8
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 1.1e-77 293.9 246 63.8
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 9.7e-77 290.8 265 63.0
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 1.3e-76 290.4 252 64.3
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 2.8e-76 289.3 251 62.9
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 3.7e-76 288.9 246 63.0
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.4e-75 287.0 234 65.8
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 2.3e-70 269.6 249 58.6
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 2.3e-70 269.6 256 58.2
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 2.8e-68 262.7 388 45.9
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 7.0e-67 258.1 250 57.2
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 5.9e-66 255.0 241 58.5
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.2e-65 253.1 231 59.7
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 6.8e-62 241.5 244 52.5
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 4.4e-61 238.8 143 78.3
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 2.8e-60 236.1 238 58.0
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 2.8e-60 236.1 143 75.5
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 4.8e-60 235.3 136 80.9
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 8.3e-60 234.6 249 49.8
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 4.2e-56 222.2 244 50.8
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 7.5e-53 211.5 218 54.1
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.7e-52 210.3 172 62.8
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.8e-49 199.1 168 60.1
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 4.7e-47 192.2 268 47.4
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.4e-46 190.7 196 55.6
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 1.2e-45 187.6 121 71.9
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 3.4e-45 186.0 285 43.5
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 3.7e-44 182.6 117 76.1
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 3.0e-33 146.4 129 66.7
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 5.0e-33 145.6 130 66.9
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 9.5e-32 141.4 280 38.2
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 2.1e-31 140.2 266 36.5
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.2e-26 124.4 95 62.1
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 7.8e-26 121.7 87 65.5
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 1.3e-25 120.9 69 82.6
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 1.1e-24 117.9 100 68.0
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 4.0e-22 109.4 98 60.2
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 1.7e-17 94.0 121 54.5
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 2.3e-17 93.6 114 51.8
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 3.0e-17 93.2 110 40.0
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 1.1e-16 91.3 74 66.2
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 7.3e-16 88.6 93 44.1
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.2e-13 81.3 78 57.7
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 3.2e-11 73.2 81 50.6
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 1.7e-09 67.4 131 42.0
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 6.6e-09 65.5 93 48.4
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 4.3e-08 62.8 153 30.1


User provided reference genes

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