Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 4.6e-192 674.5 361 100.0
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 1.1e-148 530.4 352 75.6
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 1.5e-145 520.0 354 78.0
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 2.5e-145 519.2 352 73.6
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 4.2e-145 518.5 296 83.8
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 9.4e-145 517.3 290 84.8
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 1.2e-144 516.9 304 82.2
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 1.2e-144 516.9 348 74.4
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 6.1e-144 514.6 352 73.3
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 1.0e-143 513.8 350 72.6
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 1.0e-143 513.8 352 74.4
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 1.4e-143 513.5 346 73.7
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 1.4e-143 513.5 356 72.5
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 1.4e-143 513.5 294 83.7
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 1.8e-143 513.1 356 74.4
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 3.0e-143 512.3 352 72.2
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 4.0e-143 511.9 294 84.0
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 4.0e-143 511.9 357 71.7
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 5.2e-143 511.5 338 76.0
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 5.2e-143 511.5 349 75.9
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 5.2e-143 511.5 356 72.2
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 8.8e-143 510.8 356 71.3
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 1.5e-142 510.0 351 74.4
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 2.6e-142 509.2 352 73.0
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 2.6e-142 509.2 290 84.1
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 4.4e-142 508.4 351 73.2
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 4.4e-142 508.4 293 83.6
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 7.5e-142 507.7 286 84.6
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 7.5e-142 507.7 351 76.9
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 1.3e-141 506.9 294 82.3
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 1.7e-141 506.5 353 72.8
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 2.2e-141 506.1 351 74.6
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 2.2e-141 506.1 285 84.2
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 3.7e-141 505.4 291 82.1
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 6.3e-141 504.6 352 71.3
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 1.1e-140 503.8 289 82.0
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 1.8e-140 503.1 352 71.6
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 3.1e-140 502.3 286 84.3
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 4.1e-140 501.9 286 82.2
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 7.0e-140 501.1 286 83.9
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 9.1e-140 500.7 286 82.5
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 9.1e-140 500.7 351 72.9
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 9.1e-140 500.7 288 83.7
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.2e-139 500.4 352 71.9
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 1.6e-139 500.0 286 82.2
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.6e-139 500.0 286 83.9
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.6e-139 500.0 286 83.9
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 2.0e-139 499.6 343 72.6
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 2.0e-139 499.6 283 82.7
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 2.7e-139 499.2 352 72.7
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.7e-139 499.2 352 71.9
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 2.7e-139 499.2 288 83.0
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 2.7e-139 499.2 305 78.4
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 3.5e-139 498.8 304 78.9
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 4.5e-139 498.4 351 72.6
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 4.5e-139 498.4 291 82.8
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 5.9e-139 498.0 294 82.3
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 7.7e-139 497.7 294 82.3
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 1.3e-138 496.9 352 71.3
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 1.3e-138 496.9 352 71.3
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 1.3e-138 496.9 297 79.8
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 1.7e-138 496.5 315 75.9
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 1.7e-138 496.5 306 79.1
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 2.2e-138 496.1 292 82.5
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 2.2e-138 496.1 295 80.0
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 3.8e-138 495.4 293 81.6
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 3.8e-138 495.4 352 71.6
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 5.0e-138 495.0 295 79.7
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 6.5e-138 494.6 291 82.1
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 8.5e-138 494.2 297 79.1
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.9e-137 493.0 352 71.0
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 3.2e-137 492.3 338 73.1
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 3.2e-137 492.3 351 72.1
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 3.2e-137 492.3 342 74.6
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 7.2e-137 491.1 291 81.8
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 1.2e-136 490.3 286 80.8
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.7e-136 489.2 291 81.4
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 3.6e-136 488.8 294 79.9
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 3.6e-136 488.8 295 80.0
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 4.7e-136 488.4 304 77.3
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 6.1e-136 488.0 377 67.1
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 1.0e-135 487.3 335 73.1
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 1.0e-135 487.3 352 73.6
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 1.8e-135 486.5 294 80.3
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 2.3e-135 486.1 358 67.6
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 4.0e-135 485.3 286 80.1
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 4.0e-135 485.3 286 80.4
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 1.5e-134 483.4 290 80.7
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 1.5e-134 483.4 300 75.3
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 2.0e-134 483.0 288 80.2
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 2.6e-134 482.6 350 71.7
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 5.7e-134 481.5 323 74.0
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 9.8e-134 480.7 287 79.8
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 9.8e-134 480.7 287 79.8
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.8e-133 479.2 317 74.8
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 6.3e-133 478.0 381 66.4
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 4.1e-132 475.3 263 85.6
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 1.2e-131 473.8 293 74.4
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.6e-131 473.4 300 74.0
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 1.6e-131 473.4 376 64.4
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 5.9e-131 471.5 269 81.8
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 2.9e-130 469.2 354 68.9
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 5.5e-129 464.9 360 67.8
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 1.2e-128 463.8 270 81.9
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 2.7e-128 462.6 262 82.4
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 8.8e-127 457.6 389 62.7
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 2.5e-121 439.5 281 75.4
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 6.1e-120 434.9 272 75.0
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 1.4e-119 433.7 294 74.5
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 1.4e-119 433.7 268 76.9
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 8.9e-119 431.0 302 67.9
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 1.5e-118 430.3 305 69.5
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 5.7e-118 428.3 414 57.7
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 4.0e-111 405.6 281 67.6
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 1.7e-109 400.2 276 68.5
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 2.4e-108 396.4 306 64.7
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 3.0e-106 389.4 271 66.1
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 5.0e-106 388.7 271 68.3
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 3.3e-105 386.0 217 84.8
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 2.1e-104 383.3 224 82.6
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 2.7e-91 339.7 189 82.5
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 7.3e-89 331.6 364 53.6
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 5.8e-86 322.0 289 59.2
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 2.2e-85 320.1 348 53.2
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 3.1e-71 273.1 145 82.8
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 1.4e-68 264.2 145 82.8
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 6.2e-64 248.8 147 83.7
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 1.6e-48 197.6 173 61.3
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 5.0e-45 186.0 183 54.1
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 6.7e-42 175.6 110 80.9
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 3.3e-41 173.3 120 71.7
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 2.9e-37 160.2 161 54.7
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 3.8e-37 159.8 94 71.3
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 2.7e-27 127.1 64 89.1
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 8.0e-27 125.6 137 54.0
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 2.0e-25 120.9 84 70.2
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 5.7e-25 119.4 60 85.0
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 5.3e-23 112.8 72 77.8
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.6e-19 101.3 66 72.7
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 4.7e-19 99.8 71 67.6
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 1.0e-18 98.6 89 61.8
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 6.3e-16 89.4 64 68.8
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 4.1e-15 86.7 66 60.6


User provided reference genes

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