Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006716 Daucus carota HOM05D004965 ORTHO05D004401 5.8e-46 187.2 94 100.0
DCAR_025362 Daucus carota HOM05D004965 ORTHO05D004401 3.9e-26 121.3 92 68.5
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 1.1e-12 76.6 92 52.2
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 1.4e-12 76.3 91 46.2
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 5.5e-12 74.3 96 44.8
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 9.4e-12 73.6 88 46.6
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 2.1e-11 72.4 99 46.5
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 4.6e-11 71.2 100 42.0
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 1.0e-10 70.1 96 40.6
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 1.0e-10 70.1 95 42.1
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.0e-10 70.1 92 42.4
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 2.3e-10 68.9 79 48.1
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 2.3e-10 68.9 92 40.2
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 3.0e-10 68.6 90 45.6
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 5.1e-10 67.8 95 36.8
MD13G1083500 Malus domestica HOM05D004965 ORTHO05D004401 8.8e-10 67.0 92 46.7
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 8.8e-10 67.0 98 45.9
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 8.8e-10 67.0 97 42.3
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 1.1e-09 66.6 95 37.9
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 2.0e-09 65.9 83 47.0
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 2.0e-09 65.9 94 42.6
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 3.3e-09 65.1 84 42.9
MD16G1082900 Malus domestica HOM05D004965 ORTHO05D004401 4.3e-09 64.7 79 44.3
Manes.05G094200 Manihot esculenta HOM05D004965 ORTHO05D004401 5.7e-09 64.3 77 45.5
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 5.7e-09 64.3 93 40.9
MBI04_g09739_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 7.4e-09 63.9 56 51.8
Ciclev10033175m.g Citrus clementina HOM05D004965 ORTHO05D004401 1.3e-08 63.2 74 48.6
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 1.3e-08 63.2 78 44.9
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 2.2e-08 62.4 91 42.9
TPR.G32595 Trifolium pratense HOM05D004965 ORTHO05D004401 2.2e-08 62.4 47 63.8
MSTRG.2369 Avicennia marina HOM05D004965 ORTHO05D004401 4.8e-08 61.2 97 36.1
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 4.8e-08 61.2 80 45.0
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 6.3e-08 60.8 82 42.7
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 6.3e-08 60.8 90 37.8
vmacro05780 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 6.3e-08 60.8 85 41.2
MELO3C026507.2 Cucumis melo HOM05D004965 ORTHO05D004401 8.2e-08 60.5 46 58.7
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 8.2e-08 60.5 81 43.2
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 8.2e-08 60.5 97 40.2
DCAR_026576 Daucus carota HOM05D004965 ORTHO05D004401 1.1e-07 60.1 85 41.2
Psat2g116360 Pisum sativum HOM05D004965 ORTHO05D004401 1.1e-07 60.1 85 41.2
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 1.4e-07 59.7 110 34.5
CANSAT01G1612 Cannabis sativa HOM05D004965 ORTHO05D004401 1.4e-07 59.7 42 64.3
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 1.8e-07 59.3 88 39.8
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 1.8e-07 59.3 80 41.2
Phvul.004G023800 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 1.8e-07 59.3 84 44.0
ClCG08G009090 Citrullus lanatus HOM05D004965 ORTHO05D004401 2.4e-07 58.9 52 53.8
Psat1g077560 Pisum sativum HOM05D004965 ORTHO05D004401 2.4e-07 58.9 78 44.9
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 3.1e-07 58.5 51 47.1
EL10Ac6g13083 Beta vulgaris HOM05D004965 ORTHO05D004401 4.1e-07 58.2 83 41.0
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 4.1e-07 58.2 46 56.5
Glyma.13G067000 Glycine max HOM05D004965 ORTHO05D004401 4.1e-07 58.2 84 42.9
Glyma.19G017400 Glycine max HOM05D004965 ORTHO05D004401 4.1e-07 58.2 84 42.9
Medtr6g009390 Medicago truncatula HOM05D004965 ORTHO05D004401 4.1e-07 58.2 47 59.6
CSS0014777 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 6.9e-07 57.4 83 39.8
Lj2g0004313 Lotus japonicus HOM05D004965 ORTHO05D004401 6.9e-07 57.4 81 40.7
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 6.9e-07 57.4 82 42.7
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 9.1e-07 57.0 103 35.9
Lalb_Chr05g0217401 Lupinus albus HOM05D004965 ORTHO05D004401 9.1e-07 57.0 86 41.9
CsaV3_5G037710 Cucumis sativus L. HOM05D004965 ORTHO05D004401 1.2e-06 56.6 73 39.7
CsaV3_6G036050 Cucumis sativus L. HOM05D004965 ORTHO05D004401 1.2e-06 56.6 37 64.9
Hund13292 Selenicereus undatus HOM05D004965 ORTHO05D004401 1.2e-06 56.6 56 50.0
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 1.5e-06 56.2 94 37.2
Gohir.D01G133500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 2.0e-06 55.8 40 65.0
Gorai.002G165000 Gossypium raimondii HOM05D004965 ORTHO05D004401 2.0e-06 55.8 40 65.0
Medtr5g037140 Medicago truncatula HOM05D004965 ORTHO05D004401 2.0e-06 55.8 88 38.6
arahy.Tifrunner.gnm1.ann1.6A0KRF Arachis hypogaea HOM05D004965 ORTHO05D004401 2.6e-06 55.5 99 38.4
arahy.Tifrunner.gnm1.ann1.E1G8VG Arachis hypogaea HOM05D004965 ORTHO05D004401 2.6e-06 55.5 99 38.4
CiPaw.05G143500 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.6e-06 55.5 44 54.5
FvH4_6g49680 Fragaria vesca HOM05D004965 ORTHO05D004401 2.6e-06 55.5 94 40.4
Gohir.A01G142000 Gossypium hirsutum HOM05D004965 ORTHO05D004401 2.6e-06 55.5 44 59.1
Gohir.A03G144700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 2.6e-06 55.5 82 40.2
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 2.6e-06 55.5 89 41.6
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 2.6e-06 55.5 93 38.7
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 2.6e-06 55.5 93 38.7
Gorai.005G188200 Gossypium raimondii HOM05D004965 ORTHO05D004401 2.6e-06 55.5 42 61.9
CiPaw.06G078100 Carya illinoinensis HOM05D004965 ORTHO05D004401 3.4e-06 55.1 86 41.9
FAN02G2636 Fragaria x ananassa HOM05D004965 ORTHO05D004401 3.4e-06 55.1 94 39.4
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 4.5e-06 54.7 95 37.9
Sed0027722 Sechium edule HOM05D004965 ORTHO05D004401 4.5e-06 54.7 93 36.6
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 5.9e-06 54.3 31 77.4
FAN09G1906 Fragaria x ananassa HOM05D004965 ORTHO05D004401 5.9e-06 54.3 94 39.4
Gohir.D02G167800 Gossypium hirsutum HOM05D004965 ORTHO05D004401 5.9e-06 54.3 80 41.2
Potri.010G039800 Populus trichocarpa HOM05D004965 ORTHO05D004401 5.9e-06 54.3 46 52.2
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 5.9e-06 54.3 87 36.8
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 7.7e-06 53.9 85 38.8
FAN07G0801 Fragaria x ananassa HOM05D004965 ORTHO05D004401 7.7e-06 53.9 34 70.6
FAN14G2761 Fragaria x ananassa HOM05D004965 ORTHO05D004401 7.7e-06 53.9 94 39.4
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 7.7e-06 53.9 81 38.3
Potri.008G191500 Populus trichocarpa HOM05D004965 ORTHO05D004401 7.7e-06 53.9 93 38.7
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 7.7e-06 53.9 32 71.9
Rhsim10G0029300 Rhododendron simsii HOM05D004965 ORTHO05D004401 7.7e-06 53.9 82 37.8


User provided reference genes

Program Settings