Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 5.3e-187 657.5 331 100.0
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 5.0e-161 571.2 329 86.0
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 1.5e-160 569.7 330 86.1
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 1.9e-160 569.3 328 85.4
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 3.3e-160 568.5 327 85.0
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 5.6e-160 567.8 331 85.5
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 1.6e-159 566.2 331 84.0
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 3.6e-159 565.1 332 85.2
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.4e-158 563.1 330 84.5
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 1.4e-158 563.1 330 83.6
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 2.3e-158 562.4 335 83.3
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 3.1e-158 562.0 337 82.8
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 4.0e-158 561.6 327 83.5
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 5.2e-158 561.2 330 84.2
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 3.4e-157 558.5 328 82.3
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 4.4e-157 558.1 330 82.4
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 9.8e-157 557.0 326 82.8
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 1.3e-156 556.6 330 82.4
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 2.2e-156 555.8 320 85.0
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 2.2e-156 555.8 330 82.4
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 8.3e-156 553.9 332 82.5
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 3.2e-155 552.0 332 82.5
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 4.1e-155 551.6 339 80.5
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 4.1e-155 551.6 336 81.2
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 7.0e-155 550.8 319 84.0
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 9.2e-155 550.4 316 85.1
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 9.2e-155 550.4 332 82.2
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 4.6e-154 548.1 325 82.5
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 1.7e-153 546.2 331 80.7
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 3.0e-153 545.4 325 81.5
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 1.9e-152 542.7 332 81.3
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 2.5e-152 542.3 330 81.8
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 9.5e-152 540.4 333 79.3
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 1.6e-151 539.7 330 81.5
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 3.6e-151 538.5 323 81.7
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 4.7e-151 538.1 322 81.4
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 6.2e-151 537.7 334 79.0
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 1.8e-150 536.2 338 78.7
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.8e-150 536.2 330 80.0
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 1.8e-150 536.2 330 79.1
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 2.3e-150 535.8 330 80.0
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 2.3e-150 535.8 371 73.3
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 3.1e-150 535.4 334 78.7
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 4.0e-150 535.0 337 79.2
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 5.2e-150 534.6 371 73.0
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.9e-150 533.9 329 79.0
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 1.2e-149 533.5 339 78.5
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 1.2e-149 533.5 325 80.6
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 2.0e-149 532.7 324 79.6
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 3.4e-149 531.9 332 78.6
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 3.4e-149 531.9 329 79.0
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 4.4e-149 531.6 324 80.9
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 5.8e-149 531.2 338 78.4
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 9.8e-149 530.4 330 77.9
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 1.3e-148 530.0 327 79.2
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 1.7e-148 529.6 322 81.1
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 1.7e-148 529.6 337 78.3
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 2.9e-148 528.9 333 78.7
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.9e-148 528.9 374 73.0
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.7e-148 528.5 332 78.3
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 6.4e-148 527.7 338 77.8
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 6.4e-148 527.7 338 77.8
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 8.3e-148 527.3 316 81.3
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 1.4e-147 526.6 329 78.1
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 1.9e-147 526.2 328 78.4
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 2.4e-147 525.8 371 73.0
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 7.1e-147 524.2 333 78.1
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 1.2e-146 523.5 329 78.4
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 2.7e-146 522.3 317 81.7
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 3.5e-146 521.9 332 78.0
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 3.5e-146 521.9 323 79.3
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 3.5e-146 521.9 319 79.3
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 4.6e-146 521.5 318 80.2
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 4.6e-146 521.5 329 78.4
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 6.0e-146 521.2 331 77.0
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 7.8e-146 520.8 327 78.9
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 1.0e-145 520.4 323 81.1
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 1.0e-145 520.4 323 81.1
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 1.3e-145 520.0 328 78.4
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.3e-145 519.2 345 75.4
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 6.6e-145 517.7 337 77.7
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 1.1e-144 516.9 332 78.6
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 1.1e-144 516.9 329 76.6
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 4.3e-144 515.0 327 79.8
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.1e-143 510.8 345 74.8
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 2.3e-142 509.2 320 77.8
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 5.8e-141 504.6 335 74.6
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 3.7e-140 501.9 320 75.9
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 1.4e-139 500.0 399 66.2
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 5.4e-139 498.0 304 80.9
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 6.0e-138 494.6 330 74.8
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 4.4e-133 478.4 339 73.5
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.3e-132 476.9 314 74.8
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.2e-132 476.1 337 72.7
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 8.4e-132 474.2 329 70.8
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 3.6e-127 458.8 331 68.6
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 1.5e-125 453.4 316 71.2
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 1.1e-123 447.2 339 65.8
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 2.1e-122 443.0 249 88.4
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 3.9e-121 438.7 250 86.0
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 6.6e-121 438.0 243 87.2
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 4.5e-117 425.2 248 81.9
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 4.5e-117 425.2 250 82.4
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 1.0e-113 414.1 366 62.3
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 2.3e-113 412.9 310 69.0
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 3.3e-112 409.1 322 64.9
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 5.6e-112 408.3 334 67.1
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 9.6e-112 407.5 332 65.7
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 1.1e-104 384.0 242 74.8
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 6.9e-94 348.2 316 57.9
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 5.7e-88 328.6 198 80.3
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 5.0e-84 315.5 232 68.1
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 9.4e-75 284.6 214 71.0
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 4.8e-71 272.3 319 47.0
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 1.4e-65 254.2 182 68.1
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 5.7e-64 248.8 267 47.9
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 6.3e-63 245.4 344 44.5
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 3.1e-62 243.0 136 84.6
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 1.7e-60 237.3 134 82.1
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 7.2e-59 231.9 174 67.8
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 2.6e-56 223.4 130 81.5
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.0e-44 184.9 129 73.6
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 3.0e-44 183.3 144 66.0
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 5.2e-41 172.6 135 65.2
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.2e-41 172.6 122 73.0
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.2e-41 172.6 122 73.0
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.6e-40 170.2 142 65.5
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 5.8e-40 169.1 122 71.3
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 8.3e-39 165.2 106 80.2
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 4.7e-34 149.4 199 49.2
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-33 148.3 162 48.1
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 1.0e-28 131.7 107 60.7
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 3.3e-27 126.7 92 69.6
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 2.6e-24 117.1 73 82.2
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 2.7e-21 107.1 67 82.1
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 1.3e-20 104.8 196 40.3
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 1.3e-20 104.8 78 65.4
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 1.9e-19 100.9 66 80.3
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 3.3e-19 100.1 73 68.5
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 4.0e-17 93.2 86 59.3
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 6.9e-17 92.4 61 75.4
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 7.6e-16 89.0 62 69.4
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 7.8e-13 79.0 51 72.5
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 5.6e-11 72.8 51 68.6
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 6.2e-10 69.3 50 68.0
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 1.2e-08 65.1 54 61.1
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 1.3e-07 61.6 60 58.3
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 3.8e-07 60.1 181 28.7
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 1.1e-06 58.5 166 29.5


User provided reference genes

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