Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006644 Daucus carota HOM05D007170 ORTHO05D009243 0.0e+00 2887.1 1499 100.0
Actinidia06806 Actinidia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1712.2 1512 60.8
TAR626G1158 Trochodendron aralioides HOM05D007170 ORTHO05D009243 0.0e+00 1686.4 1460 60.8
Cfa020492 Carpinus fangiana HOM05D007170 ORTHO05D009243 0.0e+00 1682.2 1510 60.1
Sabra06G0017000 Salix brachista HOM05D007170 ORTHO05D009243 0.0e+00 1640.6 1526 58.4
Potri.006G023500 Populus trichocarpa HOM05D007170 ORTHO05D009243 0.0e+00 1637.5 1526 58.7
Prupe.3G191100 Prunus persica HOM05D007170 ORTHO05D009243 0.0e+00 1626.3 1481 58.7
GSVIVG01020797001 Vitis vinifera HOM05D007170 ORTHO05D009243 0.0e+00 1620.5 1527 58.3
Haze_09546 Corylus avellana HOM05D007170 ORTHO05D009243 0.0e+00 1613.2 1511 58.8
CiPaw.03G198500 Carya illinoinensis HOM05D007170 ORTHO05D009243 0.0e+00 1588.5 1431 59.5
Atru.chr8.950 Acer truncatum HOM05D007170 ORTHO05D009243 0.0e+00 1581.6 1508 57.0
RcHm_v2.0_Chr2g0154431 Rosa chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1580.1 1458 57.3
MD09G1135500 Malus domestica HOM05D007170 ORTHO05D009243 0.0e+00 1577.0 1519 55.9
CANSAT64G1590 Cannabis sativa HOM05D007170 ORTHO05D009243 0.0e+00 1570.8 1512 56.5
Nn3g20634 Nelumbo nucifera HOM05D007170 ORTHO05D009243 0.0e+00 1567.7 1460 57.4
FvH4_6g39900 Fragaria vesca HOM05D007170 ORTHO05D009243 0.0e+00 1555.4 1435 57.1
Cc02_g31000 Coffea canephora HOM05D007170 ORTHO05D009243 0.0e+00 1532.7 1435 57.4
Nitab4.5_0002247g0080 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1530.0 1544 54.9
Lsat_1_v5_gn_2_66140 Lactuca sativa HOM05D007170 ORTHO05D009243 0.0e+00 1518.4 1531 54.9
FAN14G4936 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1516.5 1456 56.0
HanXRQChr10g0314771 Helianthus annuus HOM05D007170 ORTHO05D009243 0.0e+00 1513.4 1502 55.8
Ciclev10010909m.g Citrus clementina HOM05D007170 ORTHO05D009243 0.0e+00 1512.3 1417 57.2
Manes.09G075018 Manihot esculenta HOM05D007170 ORTHO05D009243 0.0e+00 1510.7 1527 53.2
FAN02G4004 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1510.4 1465 55.7
MBI02_g15149_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 0.0e+00 1510.0 1543 53.8
Duzib138G0290 Durio zibethinus HOM05D007170 ORTHO05D009243 0.0e+00 1505.3 1506 55.8
Sopen01g040790 Solanum pennellii HOM05D007170 ORTHO05D009243 0.0e+00 1501.5 1511 54.1
Solyc01g097110.2 Solanum lycopersicum HOM05D007170 ORTHO05D009243 0.0e+00 1495.7 1511 54.0
Peaxi162Scf00647g00012 Petunia axillaris HOM05D007170 ORTHO05D009243 0.0e+00 1495.3 1548 54.1
Gohir.D07G192100 Gossypium hirsutum HOM05D007170 ORTHO05D009243 0.0e+00 1482.6 1488 55.0
Gorai.001G214900 Gossypium raimondii HOM05D007170 ORTHO05D009243 0.0e+00 1474.5 1488 55.0
Aqoxy3G00362 Aquilegia oxysepala HOM05D007170 ORTHO05D009243 0.0e+00 1458.4 1519 53.1
Nitab4.5_0005905g0020 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1443.7 1550 52.7
PSO675G2674 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1435.6 1473 53.9
Sc07g0002130 Simmondsia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1433.7 1408 53.8
Oeu038464.1 Olea europaea HOM05D007170 ORTHO05D009243 0.0e+00 1433.3 1447 54.8
PGR031G3275 Punica granatum HOM05D007170 ORTHO05D009243 0.0e+00 1432.5 1524 52.3
PSO541G2476 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1423.7 1468 53.6
Thecc.01G177100 Theobroma cacao HOM05D007170 ORTHO05D009243 0.0e+00 1421.4 1378 56.5
Eucgr.A00891 Eucalyptus grandis HOM05D007170 ORTHO05D009243 0.0e+00 1416.7 1529 52.5
AL7G40850 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 0.0e+00 1416.0 1473 53.7
CSS0034103 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1411.0 1233 61.2
Lj7A482G28 Lonicera japonica HOM05D007170 ORTHO05D009243 0.0e+00 1409.4 1356 57.2
A08p11580 Brassica napus HOM05D007170 ORTHO05D009243 0.0e+00 1400.6 1467 53.8
BraA08t33150Z Brassica rapa HOM05D007170 ORTHO05D009243 0.0e+00 1395.6 1464 53.5
SGA_v2.0_scaffold172G38980 Striga asiatica HOM05D007170 ORTHO05D009243 0.0e+00 1392.5 1604 50.3
BcaB04g18275 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1389.8 1474 53.0
AT4G14970 Arabidopsis thaliana HOM05D007170 ORTHO05D009243 0.0e+00 1384.8 1475 53.4
BolC8t48255H Brassica oleracea HOM05D007170 ORTHO05D009243 0.0e+00 1380.9 1486 52.5
ATR1098G002 Amborella trichopoda HOM05D007170 ORTHO05D009243 0.0e+00 1372.1 1506 50.2
BcaC07g37864 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1370.5 1470 52.7
SalBow8G4071 Salvia bowleyana HOM05D007170 ORTHO05D009243 0.0e+00 1357.4 1527 50.2
Thhalv10024215m.g Eutrema salsugineum HOM05D007170 ORTHO05D009243 0.0e+00 1349.7 1475 51.5
ECA238G4341 Erigeron canadensis HOM05D007170 ORTHO05D009243 0.0e+00 1337.8 1351 55.7
Cpa.g.sc8.299 Carica papaya HOM05D007170 ORTHO05D009243 0.0e+00 1106.3 1521 45.2
Migut.B01114 Erythranthe guttata HOM05D007170 ORTHO05D009243 0.0e+00 1104.0 1229 51.2
CSS0006494 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 3.3e-300 1035.8 970 58.0
Dinv20277 Davidia involucrata HOM05D007170 ORTHO05D009243 3.2e-295 1019.2 831 64.7
Zm00001eb117500 Zea mays HOM05D007170 ORTHO05D009243 1.1e-292 1010.7 1299 45.7
CSS0002264 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 7.5e-289 998.0 970 56.4
SEGI_23823 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 3.3e-276 956.1 1234 43.4
Mapoly0001s0378 Marchantia polymorpha HOM05D007170 ORTHO05D009243 3.0e-269 932.9 1486 39.8
Os07g0154400 Oryza sativa ssp. japonica HOM05D007170 ORTHO05D009243 9.3e-263 911.4 1052 47.9
Pp3c3_20180 Physcomitrium patens HOM05D007170 ORTHO05D009243 1.3e-259 901.0 1451 38.0
Gohir.A07G185500 Gossypium hirsutum HOM05D007170 ORTHO05D009243 3.4e-241 839.7 939 50.7
Hma1.2p1_0892F.1_g233440 Hydrangea macrophylla HOM05D007170 ORTHO05D009243 5.5e-207 726.1 553 67.5
Dinv20276 Davidia involucrata HOM05D007170 ORTHO05D009243 5.4e-194 682.9 647 58.9
AagrBONN_evm.TU.Sc2ySwM_344.1322 Anthoceros agrestis HOM05D007170 ORTHO05D009243 1.0e-192 678.7 1217 36.1
HPP92_019550 Vanilla planifolia HOM05D007170 ORTHO05D009243 2.0e-188 664.5 673 52.5
CAN.G134.71 Capsicum annuum HOM05D007170 ORTHO05D009243 2.5e-183 647.5 544 61.8
CBR_g3147 Chara braunii HOM05D007170 ORTHO05D009243 2.4e-157 561.2 973 35.5
HPP92_019551 Vanilla planifolia HOM05D007170 ORTHO05D009243 8.7e-152 542.7 738 41.6
CARHR221630 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.8e-133 481.9 401 62.3
CAN.G134.69 Capsicum annuum HOM05D007170 ORTHO05D009243 1.8e-117 428.7 744 38.6
Gohir.A07G185533 Gossypium hirsutum HOM05D007170 ORTHO05D009243 2.0e-63 249.2 230 59.1
Dinv20273 Davidia involucrata HOM05D007170 ORTHO05D009243 4.4e-63 248.1 252 54.4
CARHR221660 Cardamine hirsuta HOM05D007170 ORTHO05D009243 9.9e-55 220.3 328 43.9
CARHR221670 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.9e-50 206.1 181 60.8
SEGI_21897 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 2.0e-47 196.1 270 45.6
CARHR221640 Cardamine hirsuta HOM05D007170 ORTHO05D009243 5.6e-42 177.9 141 63.1
CBR_g54165 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-41 176.4 232 39.7
QL08p022040 Quercus lobata HOM05D007170 ORTHO05D009243 1.1e-40 173.7 126 69.0
Cpa.g.sc8.300 Carica papaya HOM05D007170 ORTHO05D009243 3.8e-38 165.2 173 53.2
COL.COLO4_06563 Corchorus olitorius HOM05D007170 ORTHO05D009243 1.2e-36 160.2 122 70.5
CDE07G1176 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 2.7e-36 159.1 150 55.3
Zm00001eb046090 Zea mays HOM05D007170 ORTHO05D009243 6.2e-33 147.9 220 38.2
Dinv20272 Davidia involucrata HOM05D007170 ORTHO05D009243 7.6e-23 114.4 113 62.8
CARHR221650 Cardamine hirsuta HOM05D007170 ORTHO05D009243 3.8e-22 112.1 197 38.1
Zm00001eb010760 Zea mays HOM05D007170 ORTHO05D009243 2.5e-21 109.4 113 46.0
Zm00001eb442000 Zea mays HOM05D007170 ORTHO05D009243 2.5e-21 109.4 113 46.0
Zm00001eb031530 Zea mays HOM05D007170 ORTHO05D009243 7.1e-21 107.8 113 45.1
MBI08_g17991_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 3.7e-17 95.5 86 53.5
QL02p039588 Quercus lobata HOM05D007170 ORTHO05D009243 1.7e-14 86.7 133 42.1
Carub.0007s2712 Capsella rubella HOM05D007170 ORTHO05D009243 1.1e-13 84.0 69 52.2
CDE07G1841 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 3.6e-12 79.0 301 25.6
COL.COLO4_06564 Corchorus olitorius HOM05D007170 ORTHO05D009243 1.3e-11 77.0 129 43.4
Cre10.g453650 Chlamydomonas reinhardtii HOM05D007170 ORTHO05D009243 6.7e-11 74.7 265 26.0
GSVIVG01038387001 Vitis vinifera HOM05D007170 ORTHO05D009243 1.5e-10 73.6 51 68.6
Zm00001eb008220 Zea mays HOM05D007170 ORTHO05D009243 1.1e-08 67.4 117 32.5
CDE07G0977 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 5.3e-08 65.1 67 49.3
Lj7A482T28 Lonicera japonica HOM05D007170 ORTHO05D009243 2.2e-06 59.7 123 35.8
GSVIVG01038403001 Vitis vinifera HOM05D007170 ORTHO05D009243 2.2e-06 59.7 39 69.2


User provided reference genes

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