Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 1.0e-105 386.7 191 100.0
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 1.8e-102 375.9 191 95.3
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 1.2e-101 373.2 191 95.3
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 2.0e-101 372.5 189 96.3
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 3.4e-101 371.7 191 93.2
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 3.4e-101 371.7 191 94.2
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 5.8e-101 370.9 191 93.7
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 7.5e-101 370.5 191 94.2
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 7.5e-101 370.5 190 93.7
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 7.5e-101 370.5 190 93.7
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 9.8e-101 370.2 191 93.7
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 9.8e-101 370.2 191 93.7
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 1.3e-100 369.8 191 94.2
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 1.3e-100 369.8 189 94.2
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 1.7e-100 369.4 190 94.2
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 2.2e-100 369.0 191 93.7
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 2.9e-100 368.6 191 93.7
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 3.7e-100 368.2 191 93.7
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 3.7e-100 368.2 191 93.2
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 3.7e-100 368.2 191 93.2
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 3.7e-100 368.2 191 93.2
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 3.7e-100 368.2 191 94.8
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 4.9e-100 367.9 191 93.2
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 4.9e-100 367.9 191 92.7
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 6.4e-100 367.5 191 92.7
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 6.4e-100 367.5 191 93.2
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 8.3e-100 367.1 191 93.2
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 8.3e-100 367.1 191 94.2
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 8.3e-100 367.1 191 92.7
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 1.1e-99 366.7 191 93.7
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 1.1e-99 366.7 191 92.7
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 1.1e-99 366.7 189 93.1
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 1.4e-99 366.3 190 95.3
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 1.4e-99 366.3 191 91.6
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 1.9e-99 365.9 191 91.6
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 1.9e-99 365.9 191 93.7
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 1.9e-99 365.9 191 92.1
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 2.4e-99 365.5 189 93.1
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 2.4e-99 365.5 191 92.1
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 2.4e-99 365.5 189 93.7
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 2.4e-99 365.5 189 93.7
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 2.4e-99 365.5 189 93.7
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 3.2e-99 365.2 189 93.7
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 4.1e-99 364.8 191 93.7
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 5.4e-99 364.4 191 92.7
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 5.4e-99 364.4 188 91.5
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 5.4e-99 364.4 191 91.6
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 7.0e-99 364.0 189 93.1
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 7.0e-99 364.0 191 91.1
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 9.2e-99 363.6 191 91.1
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 9.2e-99 363.6 191 91.1
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 9.2e-99 363.6 191 91.1
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.2e-98 363.2 189 93.1
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 1.6e-98 362.8 189 92.6
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 1.6e-98 362.8 191 91.6
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 2.7e-98 362.1 191 90.6
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 4.6e-98 361.3 188 91.5
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 7.8e-98 360.5 191 89.5
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 7.8e-98 360.5 191 90.1
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 7.8e-98 360.5 191 90.1
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.0e-97 360.1 188 92.0
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 1.0e-97 360.1 189 91.0
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 1.3e-97 359.8 191 91.1
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 2.3e-97 359.0 195 92.3
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 3.0e-97 358.6 191 89.0
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 3.0e-97 358.6 191 90.1
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 3.9e-97 358.2 191 90.1
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 5.0e-97 357.8 191 90.1
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 2.5e-96 355.5 216 82.9
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 2.5e-96 355.5 191 88.5
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 9.5e-96 353.6 210 83.8
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 1.2e-95 353.2 189 88.9
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 1.6e-95 352.8 201 88.1
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 2.1e-95 352.4 201 86.1
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 2.8e-95 352.1 189 87.8
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 2.8e-95 352.1 188 92.0
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 3.6e-95 351.7 189 89.9
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 4.7e-95 351.3 191 86.9
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 4.7e-95 351.3 191 86.4
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 4.7e-95 351.3 193 90.2
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 6.2e-95 350.9 198 86.9
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 8.1e-95 350.5 188 88.3
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 1.8e-94 349.4 191 86.4
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 5.2e-94 347.8 188 86.7
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 5.2e-94 347.8 188 86.7
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 6.8e-94 347.4 188 86.7
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 6.8e-94 347.4 188 86.7
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 8.9e-94 347.1 188 86.2
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 8.9e-94 347.1 191 84.8
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 1.5e-93 346.3 188 87.8
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 2.0e-93 345.9 232 76.7
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 2.6e-93 345.5 183 89.6
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 1.3e-92 343.2 214 80.4
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 3.7e-92 341.7 188 85.6
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 6.4e-92 340.9 191 83.8
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.1e-90 335.9 191 80.6
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.7e-90 335.5 189 82.5
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 3.0e-89 332.0 191 80.6
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 3.0e-89 332.0 189 81.0
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 1.5e-88 329.7 173 91.3
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 5.6e-88 327.8 181 89.5
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 5.6e-88 327.8 181 89.5
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 4.7e-87 324.7 191 81.7
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 8.1e-87 323.9 191 78.5
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 2.3e-86 322.4 173 88.4
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 4.9e-84 314.7 188 76.6
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 6.4e-84 314.3 188 76.1
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.4e-83 313.2 160 95.0
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 9.2e-83 310.5 167 89.8
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 5.6e-80 301.2 160 89.4
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 2.6e-77 292.4 160 87.5
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 3.4e-77 292.0 161 88.2
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 1.2e-74 283.5 171 83.6
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 3.3e-72 275.4 209 67.9
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 1.5e-69 266.5 188 69.7
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 2.8e-63 245.7 140 85.7
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.5e-61 240.0 188 62.8
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.1e-59 233.8 183 61.2
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 3.0e-57 225.7 113 93.8
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 7.4e-56 221.1 206 51.9
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.1e-54 217.2 149 73.8
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 9.0e-54 214.2 129 82.9
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 6.5e-52 208.0 112 88.4
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 1.4e-51 206.8 109 92.7
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 2.1e-50 203.0 106 86.8
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.3e-49 200.3 109 89.0
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 3.0e-49 199.1 158 63.9
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 5.1e-49 198.4 109 89.9
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 4.3e-40 168.7 82 96.3
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 9.7e-40 167.5 82 95.1
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 6.3e-39 164.9 82 92.7
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 1.8e-38 163.3 80 95.0
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.2e-37 160.6 83 89.2
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 2.5e-35 152.9 84 88.1
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 1.0e-33 147.5 74 91.9
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.4e-33 147.1 157 46.5
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 3.9e-33 145.6 81 88.9
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 9.7e-32 141.0 71 93.0
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 3.7e-31 139.0 71 88.7
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 6.5e-28 128.3 84 79.8
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 2.1e-26 123.2 68 82.4
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 6.1e-26 121.7 68 82.4
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 6.1e-26 121.7 68 82.4
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 7.2e-19 98.2 51 84.3
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 2.3e-17 93.2 47 87.2
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 6.5e-12 75.1 38 86.8
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 6.5e-12 75.1 38 86.8
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 6.5e-12 75.1 38 86.8
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 6.5e-12 75.1 38 86.8
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 8.5e-12 74.7 37 89.2


User provided reference genes

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