Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 2.6e-108 395.6 229 100.0
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 3.9e-88 328.6 195 85.6
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 8.8e-88 327.4 195 85.6
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 2.4e-85 319.3 195 85.6
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 9.1e-85 317.4 209 79.4
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 2.0e-84 316.2 195 82.1
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 3.8e-83 312.0 201 82.6
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 5.0e-83 311.6 224 77.2
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 6.5e-83 311.2 222 73.0
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 8.5e-83 310.8 224 77.2
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 1.1e-82 310.5 195 82.6
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 1.1e-82 310.5 195 81.0
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 2.5e-82 309.3 195 81.5
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.6e-81 306.6 200 86.5
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 1.6e-81 306.6 238 77.3
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 4.7e-81 305.1 165 92.7
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 6.1e-81 304.7 194 79.9
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 1.4e-80 303.5 226 81.0
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 1.8e-80 303.1 222 72.1
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 3.9e-80 302.0 194 78.4
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 5.1e-80 301.6 195 77.9
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 6.7e-80 301.2 210 79.0
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 8.8e-80 300.8 186 81.2
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 8.8e-80 300.8 169 89.9
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 1.5e-79 300.1 224 79.5
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 2.0e-79 299.7 191 81.7
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 2.6e-79 299.3 210 81.0
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 4.4e-79 298.5 239 71.5
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 7.4e-79 297.7 187 80.2
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 9.7e-79 297.4 166 87.3
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 1.3e-78 297.0 216 79.2
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 2.2e-78 296.2 181 82.9
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 2.2e-78 296.2 195 77.9
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 2.8e-78 295.8 195 77.9
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 3.7e-78 295.4 224 76.3
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 6.3e-78 294.7 195 78.5
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 8.2e-78 294.3 187 78.6
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.4e-77 293.5 193 77.2
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 1.4e-77 293.5 192 77.1
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 1.8e-77 293.1 159 91.2
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 1.8e-77 293.1 224 77.7
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 3.1e-77 292.4 197 78.7
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 3.1e-77 292.4 222 71.2
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 9.1e-77 290.8 166 86.1
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 1.5e-76 290.0 160 89.4
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 2.0e-76 289.7 189 77.8
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 2.0e-76 289.7 211 74.9
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 2.6e-76 289.3 189 89.4
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 1.0e-75 287.3 193 75.6
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 1.7e-75 286.6 193 74.6
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 6.5e-75 284.6 193 75.1
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 8.5e-75 284.3 195 77.4
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 8.5e-75 284.3 160 87.5
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 1.4e-74 283.5 192 75.0
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 1.9e-74 283.1 185 76.2
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 2.5e-74 282.7 211 70.6
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 3.2e-74 282.3 214 75.7
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 7.2e-74 281.2 185 75.7
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 6.1e-73 278.1 210 72.4
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 3.0e-72 275.8 224 76.3
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 3.9e-72 275.4 221 66.5
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 6.7e-72 274.6 224 75.9
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 3.3e-71 272.3 224 69.6
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 3.3e-71 272.3 195 71.3
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 1.3e-70 270.4 166 81.9
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 1.8e-69 266.5 181 71.8
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 2.4e-69 266.2 222 69.4
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 5.3e-69 265.0 193 71.5
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 1.2e-68 263.8 203 68.5
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 2.2e-67 259.6 224 60.3
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 7.2e-66 254.6 176 75.6
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 6.1e-65 251.5 160 78.1
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 6.8e-64 248.1 209 69.4
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 7.5e-63 244.6 189 66.7
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 1.4e-61 240.4 192 70.8
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 1.2e-60 237.3 178 71.3
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 2.7e-60 236.1 195 67.7
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 2.7e-60 236.1 224 70.1
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 6.5e-59 231.5 225 68.0
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 8.5e-59 231.1 195 67.2
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 4.2e-58 228.8 191 64.9
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 5.5e-58 228.4 199 65.3
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 9.4e-58 227.6 195 64.1
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 3.6e-57 225.7 166 74.1
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 6.1e-57 224.9 195 64.6
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 1.8e-56 223.4 222 59.9
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 5.7e-55 218.4 224 65.2
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 7.5e-55 218.0 193 61.1
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 1.7e-54 216.9 192 61.5
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.8e-54 216.1 195 61.0
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 6.3e-54 214.9 174 65.5
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 2.0e-52 209.9 193 58.5
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 2.0e-52 209.9 193 58.5
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 2.7e-52 209.5 208 68.3
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 2.7e-52 209.5 208 68.3
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 7.7e-52 208.0 188 60.6
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.7e-51 206.8 189 61.4
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 2.3e-51 206.5 194 59.3
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 1.5e-50 203.8 210 65.2
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 9.5e-50 201.1 193 57.0
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 9.5e-50 201.1 193 57.0
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 9.5e-50 201.1 193 57.0
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.0e-48 197.6 224 60.3
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 4.0e-48 195.7 214 64.5
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 3.4e-47 192.6 194 57.7
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 3.4e-47 192.6 194 56.2
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 3.4e-47 192.6 194 56.2
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 4.4e-47 192.2 186 55.9
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 9.8e-47 191.0 120 75.0
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 9.2e-45 184.5 216 55.6
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 6.6e-43 178.3 193 51.8
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 2.5e-42 176.4 137 65.7
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 7.3e-42 174.9 121 71.9
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.7e-38 163.7 184 51.6
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.9e-38 162.9 158 58.9
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 2.3e-35 153.3 135 60.0
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 4.9e-30 135.6 70 90.0
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 9.5e-26 121.3 136 50.7
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 1.1e-24 117.9 66 87.9
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 2.0e-23 113.6 98 64.3
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 4.9e-22 109.0 95 64.2
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 4.9e-22 109.0 95 64.2
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 3.2e-21 106.3 57 91.2
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 3.1e-16 89.7 48 83.3
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 3.1e-16 89.7 57 80.7
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 7.6e-15 85.1 55 72.7
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 9.9e-15 84.7 55 72.7
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 2.1e-09 67.0 75 52.0
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 2.4e-08 63.5 101 40.6
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 9.0e-08 61.6 105 38.1
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 3.4e-07 59.7 124 34.7
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 3.4e-07 59.7 99 31.3
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 4.4e-07 59.3 116 36.2
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 4.4e-07 59.3 105 37.1
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 5.8e-07 58.9 29 86.2
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 7.6e-07 58.5 109 36.7
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 2.9e-06 56.6 68 39.7
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 3.8e-06 56.2 111 35.1
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 4.9e-06 55.8 151 31.8
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 4.9e-06 55.8 76 43.4
SGA_v2.0_scaffold39G15236 Striga asiatica HOM05D002899 ORTHO05D003850 4.9e-06 55.8 42 57.1
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 4.9e-06 55.8 110 35.5
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 4.9e-06 55.8 104 36.5
ClCG01G008440 Citrullus lanatus HOM05D005384 ORTHO05D006477 6.4e-06 55.5 68 38.2
MELO3C025104.2 Cucumis melo HOM05D005384 ORTHO05D006477 6.4e-06 55.5 68 38.2
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 8.4e-06 55.1 101 30.7
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 8.4e-06 55.1 119 33.6
SEGI_04448 Sequoiadendron giganteum HOM05D008111 ORTHO05D010192 8.4e-06 55.1 55 43.6


User provided reference genes

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