Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006554 Daucus carota HOM05D006482 ORTHO05D008149 4.0e-20 100.5 53 100.0
Dinv18742 Davidia involucrata HOM05D006482 ORTHO05D008149 2.4e-09 64.7 41 78.0
PGR142G0199 Punica granatum HOM05D006482 ORTHO05D008149 3.2e-09 64.3 41 75.6
vmacro06428 Vaccinium macrocarpon HOM05D006482 ORTHO05D008149 5.5e-09 63.5 41 78.0
FvH4_7g32700 Fragaria vesca HOM05D006482 ORTHO05D008149 7.1e-09 63.2 41 75.6
FAN01G3112 Fragaria x ananassa HOM05D006482 ORTHO05D008149 7.1e-09 63.2 41 75.6
FAN03G2872 Fragaria x ananassa HOM05D006482 ORTHO05D008149 7.1e-09 63.2 41 75.6
FAN17G0467 Fragaria x ananassa HOM05D006482 ORTHO05D008149 7.1e-09 63.2 41 75.6
MD07G1297700 Malus domestica HOM05D006482 ORTHO05D008149 9.3e-09 62.8 49 65.3
ECA233G2670 Erigeron canadensis HOM05D006482 ORTHO05D008149 1.2e-08 62.4 51 62.7
RcHm_v2.0_Chr1g0382671 Rosa chinensis HOM05D006482 ORTHO05D008149 1.6e-08 62.0 41 75.6
Prupe.2G317400 Prunus persica HOM05D006482 ORTHO05D008149 2.7e-08 61.2 41 75.6
Sopen08g031390 Solanum pennellii HOM05D006482 ORTHO05D008149 3.5e-08 60.8 51 58.8
Actinidia27284 Actinidia chinensis HOM05D000567 ORTHO05D000767 4.6e-08 60.5 41 75.6
Nitab4.5_0008141g0050 Nicotiana tabacum HOM05D006482 ORTHO05D008149 4.6e-08 60.5 51 60.8
Rhsim07G0077300 Rhododendron simsii HOM05D006482 ORTHO05D008149 4.6e-08 60.5 41 75.6
Solyc08g083200.3 Solanum lycopersicum HOM05D006482 ORTHO05D008149 4.6e-08 60.5 51 58.8
Ah.13g070630 Amaranthus hybridus HOM05D006482 ORTHO05D008149 6.0e-08 60.1 39 82.1
MELO3C005924.2 Cucumis melo HOM05D006482 ORTHO05D008149 6.0e-08 60.1 41 75.6
CsaV3_5G000030 Cucumis sativus L. HOM05D006482 ORTHO05D008149 6.0e-08 60.1 41 75.6
Eucgr.K00422 Eucalyptus grandis HOM05D006482 ORTHO05D008149 6.0e-08 60.1 41 70.7
Glyma.04G230700 Glycine max HOM05D006482 ORTHO05D008149 6.0e-08 60.1 51 58.8
Rhsim03G0214200 Rhododendron simsii HOM05D006482 ORTHO05D008149 6.0e-08 60.1 41 73.2
Ciclev10023193m.g Citrus clementina HOM05D006482 ORTHO05D008149 7.9e-08 59.7 41 73.2
MD01G1227400 Malus domestica HOM05D006482 ORTHO05D008149 7.9e-08 59.7 41 73.2
Hund21041 Selenicereus undatus HOM05D006482 ORTHO05D008149 7.9e-08 59.7 39 79.5
AUR62006020 Chenopodium quinoa HOM05D006482 ORTHO05D008149 1.0e-07 59.3 39 82.1
AUR62035606 Chenopodium quinoa HOM05D006482 ORTHO05D008149 1.0e-07 59.3 43 74.4
Nitab4.5_0002720g0020 Nicotiana tabacum HOM05D006482 ORTHO05D008149 1.0e-07 59.3 51 58.8
Sed0025475 Sechium edule HOM05D006482 ORTHO05D008149 1.0e-07 59.3 41 73.2
CSS0007382 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 1.3e-07 58.9 44 65.9
QL05p036199 Quercus lobata HOM05D006482 ORTHO05D008149 1.3e-07 58.9 41 73.2
QL09p007382 Quercus lobata HOM05D006482 ORTHO05D008149 1.3e-07 58.9 41 73.2
Atru.chr12.2369 Acer truncatum HOM05D006482 ORTHO05D008149 1.8e-07 58.5 45 66.7
EL10Ac3g05199 Beta vulgaris HOM05D006482 ORTHO05D008149 1.8e-07 58.5 39 79.5
Lsat_1_v5_gn_6_10060 Lactuca sativa HOM05D006482 ORTHO05D008149 1.8e-07 58.5 51 58.8
Phvul.009G047100 Phaseolus vulgaris HOM05D006482 ORTHO05D008149 1.8e-07 58.5 45 64.4
PGSC0003DMG400012236 Solanum tuberosum HOM05D006482 ORTHO05D008149 1.8e-07 58.5 51 58.8
vmacro13845 Vaccinium macrocarpon HOM05D006482 ORTHO05D008149 1.8e-07 58.5 46 63.0
Medtr3g092270 Medicago truncatula HOM05D006482 ORTHO05D008149 2.3e-07 58.2 37 81.1
TPR.G14847 Trifolium pratense HOM05D006482 ORTHO05D008149 2.3e-07 58.2 41 70.7
BcaC03g14399 Brassica carinata HOM05D006482 ORTHO05D008149 3.0e-07 57.8 41 70.7
A02p10930 Brassica napus HOM05D006482 ORTHO05D008149 3.0e-07 57.8 41 70.7
C02p18140 Brassica napus HOM05D006482 ORTHO05D008149 3.0e-07 57.8 41 70.7
C03p17520 Brassica napus HOM05D006482 ORTHO05D008149 3.0e-07 57.8 41 70.7
BolC2t07944H Brassica oleracea HOM05D006482 ORTHO05D008149 3.0e-07 57.8 41 70.7
BolC3t14165H Brassica oleracea HOM05D006482 ORTHO05D008149 3.0e-07 57.8 41 70.7
BraA02t06158Z Brassica rapa HOM05D006482 ORTHO05D008149 3.0e-07 57.8 41 70.7
Hma1.2p1_0456F.1_g156710 Hydrangea macrophylla HOM05D006482 ORTHO05D008149 3.0e-07 57.8 41 73.2
SalBow3G2365 Salvia bowleyana HOM05D006482 ORTHO05D008149 3.0e-07 57.8 48 58.3
TAR374G1512 Trochodendron aralioides HOM05D006482 ORTHO05D008149 3.0e-07 57.8 41 68.3
CANSAT21G0227 Cannabis sativa HOM05D006482 ORTHO05D008149 3.9e-07 57.4 41 68.3
Migut.E00300 Erythranthe guttata HOM05D006482 ORTHO05D008149 3.9e-07 57.4 51 58.8
GSVIVG01038627001 Vitis vinifera HOM05D006482 ORTHO05D008149 3.9e-07 57.4 41 70.7
BcaB05g22064 Brassica carinata HOM05D006482 ORTHO05D008149 5.1e-07 57.0 41 70.7
BcaC01g06263 Brassica carinata HOM05D006482 ORTHO05D008149 5.1e-07 57.0 41 70.7
CSS0001288 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 5.1e-07 57.0 39 71.8
CSS0017170 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 5.1e-07 57.0 41 68.3
CDE09G1364 Ceratophyllum demersum HOM05D001294 ORTHO05D001178 5.1e-07 57.0 41 68.3
Lj1g0026941 Lotus japonicus HOM05D006482 ORTHO05D008149 5.1e-07 57.0 41 70.7
Nn3g18841 Nelumbo nucifera HOM05D006482 ORTHO05D008149 5.1e-07 57.0 51 58.8
Manes.01G041500 Manihot esculenta HOM05D006482 ORTHO05D008149 6.7e-07 56.6 41 68.3
Oeu010737.1 Olea europaea HOM05D006482 ORTHO05D008149 6.7e-07 56.6 51 56.9
Psat5g073480 Pisum sativum HOM05D006482 ORTHO05D008149 6.7e-07 56.6 41 68.3
Potri.015G006500 Populus trichocarpa HOM05D006482 ORTHO05D008149 6.7e-07 56.6 45 66.7
TAR629G1047 Trochodendron aralioides HOM05D006482 ORTHO05D008149 6.7e-07 56.6 41 68.3
ATR0579G147 Amborella trichopoda HOM05D006482 ORTHO05D008149 8.7e-07 56.2 43 67.4
CDE11G0870 Ceratophyllum demersum HOM05D006482 ORTHO05D008149 8.7e-07 56.2 38 73.7
Lalb_Chr11g0067291 Lupinus albus HOM05D006482 ORTHO05D008149 8.7e-07 56.2 45 62.2
Potri.012G022900 Populus trichocarpa HOM05D006482 ORTHO05D008149 8.7e-07 56.2 41 70.7
arahy.Tifrunner.gnm1.ann1.CVH3M3 Arachis hypogaea HOM05D006482 ORTHO05D008149 1.1e-06 55.8 41 63.4
arahy.Tifrunner.gnm1.ann1.ZIU4UI Arachis hypogaea HOM05D006482 ORTHO05D008149 1.1e-06 55.8 41 63.4
Sabra12G0010900 Salix brachista HOM05D006482 ORTHO05D008149 1.1e-06 55.8 41 70.7
CSS0015195 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 1.5e-06 55.5 41 68.3
CSS0018303 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 1.5e-06 55.5 41 65.9
ClCG01G000130 Citrullus lanatus HOM05D006482 ORTHO05D008149 1.5e-06 55.5 41 70.7
Gohir.D08G115300 Gossypium hirsutum HOM05D006482 ORTHO05D008149 1.5e-06 55.5 41 68.3
Gorai.004G124200 Gossypium raimondii HOM05D006482 ORTHO05D008149 1.5e-06 55.5 41 68.3
HanXRQChr07g0192381 Helianthus annuus HOM05D006482 ORTHO05D008149 1.5e-06 55.5 51 56.9
THA.LOC109117152 Tarenaya hassleriana HOM05D006482 ORTHO05D008149 1.5e-06 55.5 41 70.7
Thecc.03G206900 Theobroma cacao HOM05D006482 ORTHO05D008149 1.5e-06 55.5 41 68.3
Gohir.A08G103900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 1.9e-06 55.1 41 68.3
Gorai.008G265700 Gossypium raimondii HOM05D006482 ORTHO05D008149 1.9e-06 55.1 41 68.3
Sc19g0000660 Simmondsia chinensis HOM05D006482 ORTHO05D008149 1.9e-06 55.1 39 74.4
AL8G28600 Arabidopsis lyrata HOM05D006482 ORTHO05D008149 2.5e-06 54.7 41 70.7
Carub.0008s1398 Capsella rubella HOM05D006482 ORTHO05D008149 2.5e-06 54.7 41 70.7
Thhalv10015198m.g Eutrema salsugineum HOM05D006482 ORTHO05D008149 2.5e-06 54.7 41 70.7
Sp6g15770 Schrenkiella parvula HOM05D006482 ORTHO05D008149 2.5e-06 54.7 41 70.7
unitig_699.g19497 Utricularia gibba HOM05D006482 ORTHO05D008149 2.5e-06 54.7 51 56.9
CARHR266810 Cardamine hirsuta HOM05D006482 ORTHO05D008149 3.3e-06 54.3 41 70.7
Haze_00279 Corylus avellana HOM05D006482 ORTHO05D008149 3.3e-06 54.3 41 65.9
Dinv29224 Davidia involucrata HOM05D006482 ORTHO05D008149 3.3e-06 54.3 41 65.9
Hund09702 Selenicereus undatus HOM05D006482 ORTHO05D008149 3.3e-06 54.3 39 71.8
TWI39G0373 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 3.3e-06 54.3 41 65.9
Aa31LG3G9780 Aethionema arabicum HOM05D006482 ORTHO05D008149 4.3e-06 53.9 41 70.7
A03p15030 Brassica napus HOM05D006482 ORTHO05D008149 4.3e-06 53.9 41 68.3
BraA03t10797Z Brassica rapa HOM05D006482 ORTHO05D008149 4.3e-06 53.9 41 68.3
COL.COLO4_14353 Corchorus olitorius HOM05D006482 ORTHO05D008149 4.3e-06 53.9 41 65.9
CSS0049934 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 5.6e-06 53.5 39 69.2
Cc08_g16820 Coffea canephora HOM05D006482 ORTHO05D008149 5.6e-06 53.5 51 56.9
Duzib068G1219 Durio zibethinus HOM05D006482 ORTHO05D008149 5.6e-06 53.5 41 65.9
Duzib205G0332 Durio zibethinus HOM05D006482 ORTHO05D008149 5.6e-06 53.5 41 65.9
Gohir.A12G246900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 5.6e-06 53.5 41 65.9
HPP92_020659 Vanilla planifolia HOM05D001695 ORTHO05D002735 5.6e-06 53.5 41 63.4
AT5G53650 Arabidopsis thaliana HOM05D006482 ORTHO05D008149 7.4e-06 53.1 41 68.3
PSO063G1999 Papaver somniferum HOM05D006482 ORTHO05D008149 7.4e-06 53.1 39 69.2
Sabra15G0004500 Salix brachista HOM05D006482 ORTHO05D008149 7.4e-06 53.1 38 71.1
TWI14G0741 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 9.6e-06 52.8 41 63.4


User provided reference genes

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