Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 3.4e-252 874.8 527 100.0
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 6.4e-150 535.0 422 76.1
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 1.9e-149 533.5 428 74.5
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 5.4e-149 531.9 428 74.1
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 7.0e-149 531.6 431 73.3
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 1.2e-148 530.8 443 71.6
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 3.5e-148 529.3 445 71.2
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 1.1e-146 524.2 425 73.6
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 9.5e-146 521.2 441 70.7
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 1.2e-145 520.8 430 71.4
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 2.8e-145 519.6 426 71.1
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 2.8e-145 519.6 466 68.0
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 4.7e-145 518.8 425 75.3
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 8.0e-145 518.1 434 75.3
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 1.8e-144 516.9 446 69.7
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 8.9e-144 514.6 529 64.1
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 1.7e-142 510.4 428 72.0
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 2.2e-142 510.0 448 67.9
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 1.4e-141 507.3 409 72.9
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 1.9e-141 506.9 470 67.4
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 1.9e-141 506.9 432 71.5
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 3.2e-141 506.1 443 66.4
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 7.1e-141 505.0 449 61.9
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 1.6e-140 503.8 432 71.3
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 4.6e-140 502.3 473 67.7
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 4.6e-140 502.3 452 69.5
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 7.8e-140 501.5 439 69.7
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 1.7e-139 500.4 400 75.0
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 3.9e-139 499.2 455 67.5
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.3e-138 496.1 469 65.9
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 7.3e-138 495.0 407 74.9
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 2.1e-137 493.4 493 65.7
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 2.8e-137 493.0 444 70.9
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 3.6e-137 492.7 539 59.9
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 3.6e-137 492.7 575 55.3
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 1.8e-136 490.3 445 70.8
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.8e-136 490.3 451 68.7
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 4.0e-136 489.2 460 67.8
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 6.8e-136 488.4 451 68.7
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 2.6e-135 486.5 430 69.8
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 1.7e-134 483.8 428 72.4
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 4.9e-134 482.3 378 73.8
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 6.4e-134 481.9 447 67.1
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 1.9e-133 480.3 453 66.2
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 2.4e-133 479.9 524 61.8
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 2.4e-133 479.9 457 66.5
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 7.1e-133 478.4 442 68.1
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 9.2e-133 478.0 443 68.4
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 9.2e-133 478.0 470 64.9
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.6e-132 477.2 522 61.3
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 1.6e-132 477.2 433 71.1
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 3.5e-132 476.1 443 67.9
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 3.5e-132 476.1 443 67.7
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 4.6e-132 475.7 466 67.4
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 6.0e-132 475.3 446 68.2
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 7.8e-132 474.9 445 69.2
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.0e-131 474.6 442 69.0
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 2.3e-131 473.4 479 65.6
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 3.0e-131 473.0 430 70.5
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 6.6e-131 471.9 453 67.3
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 6.6e-131 471.9 430 70.2
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 1.5e-130 470.7 519 62.4
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 2.5e-130 469.9 511 61.3
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 3.3e-130 469.5 469 65.2
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 5.6e-130 468.8 450 64.0
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 7.3e-130 468.4 441 66.0
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 7.3e-130 468.4 534 63.3
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 9.6e-130 468.0 461 65.9
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 1.6e-129 467.2 594 49.8
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 1.6e-129 467.2 454 65.6
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.7e-129 465.7 437 68.0
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 6.2e-129 465.3 438 68.7
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 1.4e-128 464.2 508 61.0
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.4e-128 464.2 437 68.0
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.4e-128 464.2 428 68.2
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.1e-128 463.0 428 68.2
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 1.5e-127 460.7 430 66.0
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 2.0e-127 460.3 431 65.4
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 3.4e-127 459.5 446 65.0
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 2.2e-126 456.8 522 59.0
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 4.9e-126 455.7 439 64.2
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 6.4e-126 455.3 529 61.2
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 6.4e-126 455.3 384 74.0
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 8.4e-126 454.9 441 64.6
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 8.4e-126 454.9 441 64.6
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 1.9e-125 453.8 430 65.6
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 4.2e-125 452.6 537 58.5
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 7.1e-125 451.8 438 64.6
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.6e-124 450.7 428 66.8
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 1.6e-124 450.7 353 68.8
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 3.5e-124 449.5 431 65.4
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 3.5e-124 449.5 478 56.7
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 6.0e-124 448.7 560 57.0
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 1.0e-123 448.0 437 64.1
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 1.0e-123 448.0 437 64.1
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 1.3e-123 447.6 422 67.8
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 5.1e-123 445.7 518 53.1
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 9.6e-122 441.4 409 67.7
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 3.1e-120 436.4 538 55.6
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.1e-117 427.9 439 63.1
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.4e-117 426.8 472 61.4
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.4e-117 425.6 514 60.9
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 1.3e-115 421.0 465 61.1
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 1.3e-115 421.0 436 63.5
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 1.9e-114 417.2 407 66.6
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.3e-114 416.4 531 58.9
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 5.6e-114 415.6 417 67.4
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 2.1e-113 413.7 454 59.0
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 9.0e-112 408.3 470 59.8
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 2.0e-111 407.1 458 62.7
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 2.2e-110 403.7 527 57.1
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 6.0e-108 395.6 446 60.5
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 9.6e-106 388.3 451 58.8
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 3.4e-103 379.8 460 57.6
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 8.4e-102 375.2 342 69.9
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 3.2e-101 373.2 404 59.2
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 4.2e-101 372.9 402 58.7
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 2.1e-100 370.5 472 50.6
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 1.0e-99 368.2 354 70.3
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 9.6e-98 361.7 336 63.7
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 3.9e-91 339.7 344 67.2
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 1.3e-89 334.7 413 51.8
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 1.8e-88 330.9 276 61.6
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 2.2e-86 323.9 329 56.2
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 2.1e-84 317.4 344 66.3
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 3.1e-72 276.9 600 38.8
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 2.0e-71 274.2 458 44.5
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 8.0e-68 262.3 315 61.9
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 4.0e-67 260.0 263 56.7
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 8.8e-67 258.8 398 39.4
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 2.2e-65 254.2 471 40.6
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 8.0e-52 209.1 135 77.8
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.2e-42 178.7 149 59.7
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 1.3e-38 165.2 178 51.1
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.6e-38 162.5 138 56.5
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.1e-37 162.2 138 56.5
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.5e-37 161.8 138 56.5
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.4e-32 145.2 165 49.1
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.4e-32 145.2 95 78.9
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.2e-32 144.1 144 48.6
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 9.2e-32 142.5 144 47.9
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 7.8e-31 139.4 461 27.3
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.3e-29 132.9 139 48.9
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.7e-28 130.2 182 42.3
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 2.4e-24 117.9 92 60.9
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 2.8e-20 104.4 68 76.5
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.8e-19 101.7 73 64.4
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 2.3e-19 101.3 122 48.4
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 2.0e-18 98.2 210 34.3
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 1.3e-17 95.5 56 80.4
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 6.4e-17 93.2 91 52.7
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 6.0e-15 86.7 55 72.7
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 4.0e-11 73.9 123 39.8
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 8.9e-11 72.8 71 62.0
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 7.6e-10 69.7 52 71.2
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 2.3e-06 58.2 57 57.9


User provided reference genes

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