Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006522 Daucus carota HOM05D002255 ORTHO05D002288 3.6e-131 471.9 285 100.0
CSS0015495 Camellia sinensis var. sinensis HOM05D002255 ORTHO05D002288 7.2e-39 165.2 289 37.7
Lj2P163T54 Lonicera japonica HOM05D002255 ORTHO05D002288 3.6e-38 162.9 257 40.9
COL.COLO4_10731 Corchorus olitorius HOM05D002255 ORTHO05D002288 2.3e-37 160.2 264 38.6
Atru.chr9.1928 Acer truncatum HOM05D002255 ORTHO05D002288 3.0e-37 159.8 273 39.9
QL02p029860 Quercus lobata HOM05D002255 ORTHO05D002288 3.0e-37 159.8 266 42.1
Hma1.2p1_0359F.1_g135100 Hydrangea macrophylla HOM05D002255 ORTHO05D002288 5.1e-37 159.1 268 38.8
Sabra01G0065200 Salix brachista HOM05D002255 ORTHO05D002288 1.5e-36 157.5 266 40.6
Ciclev10023315m.g Citrus clementina HOM05D002255 ORTHO05D002288 2.5e-36 156.8 265 40.0
Potri.001G089000 Populus trichocarpa HOM05D002255 ORTHO05D002288 9.7e-36 154.8 264 40.9
Duzib205G1099 Durio zibethinus HOM05D002255 ORTHO05D002288 1.3e-35 154.5 269 35.7
Actinidia22177 Actinidia chinensis HOM05D002255 ORTHO05D002288 4.8e-35 152.5 260 39.6
Thecc.03G301000 Theobroma cacao HOM05D002255 ORTHO05D002288 3.4e-33 146.4 269 34.9
Gohir.A09G189700 Gossypium hirsutum HOM05D002255 ORTHO05D002288 5.9e-33 145.6 270 35.2
CSS0048832 Camellia sinensis var. sinensis HOM05D002255 ORTHO05D002288 1.7e-32 144.1 246 38.2
Lsat_1_v5_gn_3_11301 Lactuca sativa HOM05D002255 ORTHO05D002288 1.7e-32 144.1 262 38.2
Gohir.D09G184400 Gossypium hirsutum HOM05D002255 ORTHO05D002288 2.9e-32 143.3 270 34.8
Gorai.006G206900 Gossypium raimondii HOM05D002255 ORTHO05D002288 2.9e-32 143.3 270 34.8
Eucgr.E00885 Eucalyptus grandis HOM05D002255 ORTHO05D002288 5.0e-32 142.5 272 36.8
CiPaw.12G081200 Carya illinoinensis HOM05D002255 ORTHO05D002288 1.4e-31 141.0 266 36.8
Nn3g18976 Nelumbo nucifera HOM05D002255 ORTHO05D002288 4.2e-31 139.4 264 35.6
Peaxi162Scf00102g01853 Petunia axillaris HOM05D002255 ORTHO05D002288 7.2e-31 138.7 280 33.9
Nn1g00261 Nelumbo nucifera HOM05D002255 ORTHO05D002288 1.2e-30 137.9 247 36.8
HanXRQChr17g0534981 Helianthus annuus HOM05D002255 ORTHO05D002288 1.6e-30 137.5 239 39.3
PGSC0003DMG400005843 Solanum tuberosum HOM05D002255 ORTHO05D002288 2.7e-30 136.7 281 32.7
Solyc08g008360.2 Solanum lycopersicum HOM05D002255 ORTHO05D002288 1.0e-29 134.8 285 31.6
Sopen08g004240 Solanum pennellii HOM05D002255 ORTHO05D002288 1.0e-29 134.8 285 31.6
CiPaw.11G118700 Carya illinoinensis HOM05D002255 ORTHO05D002288 1.1e-28 131.3 266 33.1
TPR.G3449 Trifolium pratense HOM05D002255 ORTHO05D002288 1.1e-28 131.3 265 32.8
ECA246G0612 Erigeron canadensis HOM05D002255 ORTHO05D002288 2.6e-28 130.2 239 38.9
Prupe.5G123000 Prunus persica HOM05D002255 ORTHO05D002288 3.3e-28 129.8 270 36.7
Manes.02G008000 Manihot esculenta HOM05D002255 ORTHO05D002288 5.7e-28 129.0 262 34.0
Glyma.05G218300 Glycine max HOM05D002255 ORTHO05D002288 7.4e-28 128.6 240 35.8
Cfa011979 Carpinus fangiana HOM05D002255 ORTHO05D002288 9.7e-28 128.3 248 35.5
Lj4g0026828 Lotus japonicus HOM05D002255 ORTHO05D002288 1.3e-27 127.9 251 34.7
VMungo0251G1524 Vigna mungo HOM05D002255 ORTHO05D002288 3.7e-27 126.3 240 35.0
Glyma.08G024400 Glycine max HOM05D002255 ORTHO05D002288 4.8e-27 125.9 236 35.6
Medtr8g099655 Medicago truncatula HOM05D002255 ORTHO05D002288 6.3e-27 125.6 246 34.6
Phvul.002G300100 Phaseolus vulgaris HOM05D002255 ORTHO05D002288 6.3e-27 125.6 240 35.8
Ca_17465_v3 Cicer arietinum L. HOM05D002255 ORTHO05D002288 1.4e-26 124.4 238 35.3
Cpa.g.sc634.4 Carica papaya HOM05D002255 ORTHO05D002288 5.3e-26 122.5 246 34.1
PGR042G2287 Punica granatum HOM05D002255 ORTHO05D002288 1.5e-25 120.9 277 33.6
MBI06_g13416_MAGBIO Magnolia biondii HOM05D002255 ORTHO05D002288 7.7e-25 118.6 245 34.7
MD06G1110100 Malus domestica HOM05D002255 ORTHO05D002288 6.5e-24 115.5 277 35.0
Aqoxy7G00071 Aquilegia oxysepala HOM05D002255 ORTHO05D002288 4.2e-23 112.8 285 41.1
CANSAT21G1974 Cannabis sativa HOM05D002255 ORTHO05D002288 5.5e-23 112.5 259 32.0
RcHm_v2.0_Chr7g0194121 Rosa chinensis HOM05D002255 ORTHO05D002288 1.2e-22 111.3 252 34.5
Gohir.D03G084400 Gossypium hirsutum HOM05D002255 ORTHO05D002288 1.6e-22 110.9 248 31.0
Gorai.003G078200 Gossypium raimondii HOM05D002255 ORTHO05D002288 1.6e-22 110.9 248 31.0
Gohir.A02G099300 Gossypium hirsutum HOM05D002255 ORTHO05D002288 2.1e-22 110.5 248 31.0
FvH4_5g04950 Fragaria vesca HOM05D002255 ORTHO05D002288 3.6e-22 109.8 272 33.8
EL10Ac5g12942 Beta vulgaris HOM05D002255 ORTHO05D002288 4.7e-22 109.4 280 30.4
Lalb_Chr05g0224011 Lupinus albus HOM05D002255 ORTHO05D002288 4.7e-22 109.4 250 32.8
Nitab4.5_0002231g0100 Nicotiana tabacum HOM05D002255 ORTHO05D002288 4.7e-22 109.4 284 29.6
FAN18G0019 Fragaria x ananassa HOM05D002255 ORTHO05D002288 6.1e-22 109.0 272 33.8
Rhsim02G0246900 Rhododendron simsii HOM05D002255 ORTHO05D002288 1.0e-21 108.2 123 50.4
Haze_09094 Corylus avellana HOM05D002255 ORTHO05D002288 1.8e-21 107.5 238 30.7
Psat7g024880 Pisum sativum HOM05D002255 ORTHO05D002288 2.3e-21 107.1 237 32.5
QL02p029876 Quercus lobata HOM05D002255 ORTHO05D002288 2.3e-21 107.1 101 55.4
FAN08G1358 Fragaria x ananassa HOM05D002255 ORTHO05D002288 3.0e-21 106.7 271 33.2
AUR62019868 Chenopodium quinoa HOM05D002255 ORTHO05D002288 6.7e-21 105.5 254 31.1
FAN13G3015 Fragaria x ananassa HOM05D002255 ORTHO05D002288 8.8e-21 105.1 272 33.1
MD14G1131100 Malus domestica HOM05D002255 ORTHO05D002288 1.1e-20 104.8 267 32.2
ClCG07G011470 Citrullus lanatus HOM05D002255 ORTHO05D002288 5.7e-20 102.4 249 29.7
QL02p029894 Quercus lobata HOM05D002255 ORTHO05D002288 9.7e-20 101.7 217 37.3
Sed0012868 Sechium edule HOM05D002255 ORTHO05D002288 9.7e-20 101.7 247 30.4
CsaV3_4G006750 Cucumis sativus L. HOM05D002255 ORTHO05D002288 1.4e-18 97.8 248 30.6
MELO3C016274.2 Cucumis melo HOM05D002255 ORTHO05D002288 1.8e-18 97.4 248 30.6
PSO384G0536 Papaver somniferum HOM05D002255 ORTHO05D002288 2.0e-17 94.0 240 31.2
Nitab4.5_0007367g0010 Nicotiana tabacum HOM05D002255 ORTHO05D002288 2.6e-17 93.6 256 29.3
Ah.12g052770 Amaranthus hybridus HOM05D002255 ORTHO05D002288 5.0e-16 89.4 238 27.7
FAN18G0680 Fragaria x ananassa HOM05D002255 ORTHO05D002288 5.0e-16 89.4 269 30.1
AUR62010866 Chenopodium quinoa HOM05D002255 ORTHO05D002288 6.5e-16 89.0 229 29.3
Sc01g0010380 Simmondsia chinensis HOM05D002255 ORTHO05D002288 1.5e-15 87.8 237 28.7
TWI60G0014 Tripterygium wilfordii HOM05D002255 ORTHO05D002288 2.5e-15 87.0 247 29.6
Dinv37512 Davidia involucrata HOM05D002255 ORTHO05D002288 4.2e-15 86.3 78 51.3
ATR0602G057 Amborella trichopoda HOM05D002255 ORTHO05D002288 9.4e-15 85.1 237 28.3
THA.LOC104813045 Tarenaya hassleriana HOM05D012458 ORTHO05D014337 9.4e-15 85.1 247 28.7
SEGI_25160 Sequoiadendron giganteum HOM05D002255 ORTHO05D002288 2.7e-14 83.6 234 28.6
FAN04G2345 Fragaria x ananassa HOM05D002255 ORTHO05D002288 2.0e-12 77.4 105 52.4
Lj3g0024476 Lotus japonicus HOM05D002255 ORTHO05D002288 7.5e-12 75.5 248 27.0
QL08p047076 Quercus lobata HOM05D002255 ORTHO05D002288 9.7e-12 75.1 247 25.1
Haze_15727 Corylus avellana HOM05D002255 ORTHO05D002288 2.8e-11 73.6 269 25.3
QL02p029867 Quercus lobata HOM05D002255 ORTHO05D002288 4.8e-11 72.8 57 61.4
ATR0078G028 Amborella trichopoda HOM05D002255 ORTHO05D002288 1.1e-10 71.6 245 24.9
Nn1g00427 Nelumbo nucifera HOM05D002255 ORTHO05D002288 1.1e-10 71.6 242 26.9
arahy.Tifrunner.gnm1.ann1.WLQ804 Arachis hypogaea HOM05D002255 ORTHO05D002288 1.4e-10 71.2 248 24.6
Glyma.07G050100 Glycine max HOM05D002255 ORTHO05D002288 1.4e-10 71.2 247 24.7
TAR375G0553 Trochodendron aralioides HOM05D002255 ORTHO05D002288 1.8e-10 70.9 241 26.6
Cfa003741 Carpinus fangiana HOM05D002255 ORTHO05D002288 3.1e-10 70.1 244 26.6
Psat4g163560 Pisum sativum HOM05D002255 ORTHO05D002288 3.1e-10 70.1 245 25.7
Sed0000936 Sechium edule HOM05D002255 ORTHO05D002288 3.1e-10 70.1 242 26.0
arahy.Tifrunner.gnm1.ann1.I8323W Arachis hypogaea HOM05D002255 ORTHO05D002288 4.1e-10 69.7 248 24.6
COL.COLO4_06208 Corchorus olitorius HOM05D002255 ORTHO05D002288 4.1e-10 69.7 222 27.9
VMungo0331G1755 Vigna mungo HOM05D002255 ORTHO05D002288 4.1e-10 69.7 244 24.6
SalBow8G1331 Salvia bowleyana HOM05D002255 ORTHO05D002288 9.1e-10 68.6 56 62.5
Peaxi162Scf00074g10019 Petunia axillaris HOM05D002255 ORTHO05D002288 1.2e-09 68.2 240 24.2
CANSAT56G1904 Cannabis sativa HOM05D002255 ORTHO05D002288 1.6e-09 67.8 241 27.0
CANSAT56G3209 Cannabis sativa HOM05D002255 ORTHO05D002288 1.6e-09 67.8 241 27.0
Medtr8g017100 Medicago truncatula HOM05D002255 ORTHO05D002288 1.6e-09 67.8 247 25.9
MELO3C016367.2 Cucumis melo HOM05D002255 ORTHO05D002288 2.0e-09 67.4 243 25.1
Lalb_Chr10g0100851 Lupinus albus HOM05D002255 ORTHO05D002288 2.7e-09 67.0 251 24.3
Manes.05G017000 Manihot esculenta HOM05D002255 ORTHO05D002288 2.7e-09 67.0 242 24.8
Phvul.010G119100 Phaseolus vulgaris HOM05D002255 ORTHO05D002288 3.5e-09 66.6 244 23.8
Glyma.03G260700 Glycine max HOM05D002255 ORTHO05D002288 4.5e-09 66.2 249 24.9
Peaxi162Scf00313g00031 Petunia axillaris HOM05D002255 ORTHO05D002288 4.5e-09 66.2 243 25.5
Thecc.01G334100 Theobroma cacao HOM05D002255 ORTHO05D002288 4.5e-09 66.2 241 25.3
SGA_v2.0_scaffold111G31397 Striga asiatica HOM05D002255 ORTHO05D002288 5.9e-09 65.9 59 55.9
TPR.G19840 Trifolium pratense HOM05D002255 ORTHO05D002288 5.9e-09 65.9 247 24.7
Ciclev10022281m.g Citrus clementina HOM05D002255 ORTHO05D002288 7.7e-09 65.5 238 24.8
DCAR_006563 Daucus carota HOM05D002255 ORTHO05D002288 1.0e-08 65.1 238 23.9
Eucgr.E01054 Eucalyptus grandis HOM05D002255 ORTHO05D002288 1.3e-08 64.7 246 25.6
Eucgr.E01061 Eucalyptus grandis HOM05D002255 ORTHO05D002288 1.3e-08 64.7 239 23.8
SEGI_10050 Sequoiadendron giganteum HOM05D002255 ORTHO05D002288 1.3e-08 64.7 79 44.3
ClCG07G008260 Citrullus lanatus HOM05D002255 ORTHO05D002288 2.2e-08 63.9 245 24.9
CsaV3_4G005840 Cucumis sativus L. HOM05D002255 ORTHO05D002288 2.2e-08 63.9 99 37.4
Nn3g18858 Nelumbo nucifera HOM05D002255 ORTHO05D002288 5.0e-08 62.8 244 25.0
unitig_748.g7136 Utricularia gibba HOM05D002255 ORTHO05D002288 5.0e-08 62.8 251 25.5
Nitab4.5_0004249g0030 Nicotiana tabacum HOM05D002255 ORTHO05D002288 6.5e-08 62.4 243 24.3
MBI04_g15572_MAGBIO Magnolia biondii HOM05D002255 ORTHO05D002288 1.1e-07 61.6 243 25.5
Gohir.D09G182900 Gossypium hirsutum HOM05D002255 ORTHO05D002288 1.5e-07 61.2 239 24.7
Gorai.006G205200 Gossypium raimondii HOM05D002255 ORTHO05D002288 1.5e-07 61.2 239 24.7
Glyma.16G018800 Glycine max HOM05D002255 ORTHO05D002288 1.9e-07 60.8 249 23.3
Sed0017440 Sechium edule HOM05D002255 ORTHO05D002288 1.9e-07 60.8 238 25.2
CiPaw.12G076300 Carya illinoinensis HOM05D002255 ORTHO05D002288 2.5e-07 60.5 239 24.3
Migut.E01280 Erythranthe guttata HOM05D002255 ORTHO05D002288 2.5e-07 60.5 54 53.7
VMungo1309G2654 Vigna mungo HOM05D002255 ORTHO05D002288 2.5e-07 60.5 245 24.5
C09p73040 Brassica napus HOM05D002916 ORTHO05D003152 3.2e-07 60.1 95 37.9
Nitab4.5_0002053g0080 Nicotiana tabacum HOM05D002255 ORTHO05D002288 3.2e-07 60.1 244 29.1
Gohir.A09G188100 Gossypium hirsutum HOM05D002255 ORTHO05D002288 4.2e-07 59.7 240 23.3
MBI12_g16192_MAGBIO Magnolia biondii HOM05D002255 ORTHO05D002288 4.2e-07 59.7 246 24.4
BolC9t60038H Brassica oleracea HOM05D002916 ORTHO05D003152 5.5e-07 59.3 95 35.8
Cpa.g.sc141.2 Carica papaya HOM05D002255 ORTHO05D002288 5.5e-07 59.3 242 23.1
Migut.N02126 Erythranthe guttata HOM05D002255 ORTHO05D002288 5.5e-07 59.3 238 23.9
PSO170G1572 Papaver somniferum HOM05D002255 ORTHO05D002288 5.5e-07 59.3 241 22.8
TAR374G1498 Trochodendron aralioides HOM05D002255 ORTHO05D002288 5.5e-07 59.3 240 24.2
Oeu010729.1 Olea europaea HOM05D002255 ORTHO05D002288 7.2e-07 58.9 246 24.8
Phvul.009G257700 Phaseolus vulgaris HOM05D002255 ORTHO05D002288 7.2e-07 58.9 243 25.1
SGA_v2.0_scaffold104G30247 Striga asiatica HOM05D002255 ORTHO05D002288 7.2e-07 58.9 79 36.7
Ciclev10024010m.g Citrus clementina HOM05D002255 ORTHO05D002288 9.4e-07 58.5 271 21.4
Gohir.A11G100600 Gossypium hirsutum HOM05D002255 ORTHO05D002288 9.4e-07 58.5 241 24.9
Gorai.007G112600 Gossypium raimondii HOM05D002255 ORTHO05D002288 9.4e-07 58.5 241 24.9
Nitab4.5_0000479g0060 Nicotiana tabacum HOM05D002255 ORTHO05D002288 9.4e-07 58.5 265 23.0
PSO063G2959 Papaver somniferum HOM05D002255 ORTHO05D002288 9.4e-07 58.5 241 22.8
Cfa011907 Carpinus fangiana HOM05D002255 ORTHO05D002288 1.2e-06 58.2 240 25.0
CSS0018027 Camellia sinensis var. sinensis HOM05D002255 ORTHO05D002288 1.6e-06 57.8 78 39.7
Gohir.D11G105300 Gossypium hirsutum HOM05D002255 ORTHO05D002288 1.6e-06 57.8 241 24.9
Nitab4.5_0003419g0080 Nicotiana tabacum HOM05D002255 ORTHO05D002288 1.6e-06 57.8 243 25.1
Potri.001G448500 Populus trichocarpa HOM05D002255 ORTHO05D002288 1.6e-06 57.8 250 24.0
Haze_09192 Corylus avellana HOM05D002255 ORTHO05D002288 2.1e-06 57.4 240 24.6
Lsat_1_v5_gn_0_45861 Lactuca sativa HOM05D002255 ORTHO05D002288 2.1e-06 57.4 247 22.7
Lsat_1_v5_gn_3_14761 Lactuca sativa HOM05D002255 ORTHO05D002288 2.1e-06 57.4 247 22.7
Medtr6g052290 Medicago truncatula HOM05D002255 ORTHO05D002288 2.1e-06 57.4 241 24.1
Rhsim02G0253400 Rhododendron simsii HOM05D002255 ORTHO05D002288 2.7e-06 57.0 229 23.6
PGSC0003DMG400011267 Solanum tuberosum HOM05D002255 ORTHO05D002288 2.7e-06 57.0 246 24.4
Actinidia22215 Actinidia chinensis HOM05D002255 ORTHO05D002288 3.6e-06 56.6 77 36.4
CARHR255700 Cardamine hirsuta HOM05D012458 ORTHO05D014337 3.6e-06 56.6 62 41.9
Potri.011G153000 Populus trichocarpa HOM05D002255 ORTHO05D002288 6.1e-06 55.8 247 25.1
Aa31LG2G1750 Aethionema arabicum HOM05D002255 ORTHO05D002288 8.0e-06 55.5 225 21.8
Manes.01G240600 Manihot esculenta HOM05D002255 ORTHO05D002288 8.0e-06 55.5 240 24.2


User provided reference genes

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