Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1497.3 732 100.0
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1338.2 732 86.9
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1333.5 730 86.3
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1332.8 730 86.6
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1331.2 732 86.2
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1328.5 732 86.7
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1327.8 732 86.3
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1327.4 733 86.4
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1323.5 732 86.3
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1322.0 732 86.2
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1322.0 730 85.8
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1319.3 734 85.3
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1318.9 730 85.9
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1318.9 730 85.6
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1317.4 734 84.9
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1315.1 732 85.5
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1314.3 730 85.9
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1314.3 734 84.7
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1311.2 730 84.8
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1311.2 730 84.5
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1310.4 724 86.2
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1310.0 730 84.4
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1310.0 730 84.4
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1310.0 732 85.4
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1309.3 730 85.6
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1308.9 732 85.7
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1308.5 732 84.2
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1308.5 732 84.3
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1307.0 730 84.8
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1306.6 733 85.0
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1306.2 732 85.2
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1305.8 732 84.2
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1305.0 733 85.0
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1304.7 734 85.0
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1304.3 734 84.9
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1303.5 775 81.8
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1302.0 744 83.7
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1301.6 733 85.3
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1300.8 736 85.1
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1300.4 734 83.9
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1299.6 732 85.0
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1299.6 735 84.6
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1296.2 732 84.6
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1294.6 732 84.7
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1294.3 735 83.1
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1293.9 732 83.6
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1292.3 732 83.5
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1291.6 734 83.1
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1290.4 732 83.1
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1290.0 731 83.3
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1289.2 732 84.2
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1288.5 733 83.5
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1288.1 733 83.9
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1286.6 732 83.5
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1286.6 732 84.6
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1286.2 735 83.5
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1285.0 774 80.0
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1284.2 732 83.2
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1283.1 782 79.4
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1282.7 697 87.1
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1281.2 749 82.9
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1280.8 732 82.5
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1280.4 732 83.6
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1278.5 779 78.9
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1278.5 779 78.9
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1278.1 734 83.7
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1277.3 732 82.7
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1277.3 732 82.9
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1275.8 732 82.5
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1275.8 733 83.5
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1274.2 737 82.8
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1274.2 733 82.7
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1273.5 732 82.5
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1271.9 725 83.9
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1271.9 732 82.8
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1271.5 732 83.3
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1271.1 732 82.2
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1271.1 732 82.7
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1268.8 732 82.4
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1268.4 732 82.1
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1268.4 730 82.6
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1268.1 732 82.5
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1267.3 732 81.8
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1266.5 732 83.2
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1266.5 732 82.7
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1266.1 732 82.7
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1265.4 732 82.4
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1265.4 734 82.4
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1265.0 732 83.2
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1263.4 732 82.0
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1261.1 737 82.1
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1248.8 730 82.1
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1236.9 830 73.5
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1232.6 734 80.2
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1224.9 744 79.7
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1224.2 732 81.4
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1223.4 744 79.6
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1222.2 749 78.6
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1221.5 698 82.4
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1221.1 743 79.4
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1220.3 732 80.7
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1213.4 733 79.1
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1209.9 727 79.4
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1203.0 663 84.9
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1198.3 730 79.6
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1192.2 735 78.2
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1178.3 733 76.9
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1176.4 659 85.0
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1169.8 695 79.6
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1162.1 667 82.9
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1156.0 731 75.6
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1154.0 741 74.2
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1153.3 707 77.2
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1136.7 696 77.9
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1134.8 734 74.0
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 0.0e+00 1130.9 616 88.5
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 0.0e+00 1122.8 616 86.7
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 0.0e+00 1095.9 734 71.8
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 0.0e+00 1092.8 585 88.9
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 1.7e-310 1068.9 732 71.9
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 1.6e-305 1052.4 750 70.9
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 2.4e-304 1048.5 705 71.5
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 8.5e-286 986.9 701 70.0
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 4.2e-285 984.6 736 64.8
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 4.7e-284 981.1 733 64.7
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 7.4e-282 973.8 713 65.8
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 8.9e-259 897.1 690 62.3
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 5.7e-258 894.4 669 64.6
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 3.7e-257 891.7 656 65.4
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 3.1e-256 888.6 504 85.9
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 5.9e-255 884.4 567 76.4
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 7.3e-253 877.5 697 60.8
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 6.4e-241 837.8 702 57.8
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 7.1e-232 807.7 783 53.6
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 2.3e-230 802.7 502 77.1
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 4.4e-218 761.9 418 86.8
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 7.1e-208 728.0 710 53.1
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.2e-185 653.3 422 74.6
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 4.1e-155 552.7 377 70.3
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 5.3e-155 552.4 303 88.8
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.2e-151 541.2 315 82.2
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.5e-146 523.1 357 70.9
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 4.7e-143 512.7 311 80.7
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 1.1e-139 501.5 349 76.2
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.5e-128 464.5 338 67.5
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 4.1e-115 419.9 288 71.2
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 9.9e-109 398.7 314 65.3
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 3.8e-92 343.6 183 81.4
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.3e-89 335.1 209 76.1
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 2.6e-85 320.9 425 47.5
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 7.2e-75 286.2 353 49.0
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 9.7e-72 275.8 221 62.4
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.2e-69 268.9 168 71.4
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 6.1e-66 256.5 204 63.7
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.4e-65 255.4 208 59.1
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 6.9e-62 243.0 182 73.1
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 3.7e-47 194.1 219 45.7
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 2.4e-46 191.4 207 52.2
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 1.6e-45 188.7 101 80.2
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 2.9e-44 184.5 101 80.2
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 3.0e-33 147.9 80 78.8
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 2.0e-29 135.2 138 50.0
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 1.2e-26 125.9 161 47.8
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 7.5e-24 116.7 187 37.4
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 2.9e-23 114.8 187 37.4
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 4.9e-23 114.0 126 50.8
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 4.1e-22 110.9 63 73.0
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 2.3e-20 105.1 60 85.0
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 3.3e-19 101.3 129 48.8
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 2.3e-17 95.1 108 51.9
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 3.1e-17 94.7 111 46.8
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 2.6e-16 91.7 67 65.7
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 1.0e-12 79.7 74 54.1
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 1.3e-12 79.3 73 54.8
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 3.6e-10 71.2 49 73.5
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 5.8e-08 63.9 34 88.2
Atru.chr9.1960 Acer truncatum HOM05D003895 ORTHO05D004723 3.7e-07 61.2 45 73.3
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 3.7e-07 61.2 54 59.3
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 6.4e-07 60.5 43 76.7
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 3.2e-06 58.2 40 62.5


User provided reference genes

Program Settings