Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006415 Daucus carota HOM05D004145 ORTHO05D004879 0.0e+00 1266.5 696 100.0
CSS0045127 Camellia sinensis var. sinensis HOM05D004145 ORTHO05D004879 9.1e-237 823.9 653 70.0
Dinv09830 Davidia involucrata HOM05D004145 ORTHO05D004879 1.2e-236 823.5 649 70.7
CSS0025723 Camellia sinensis var. sinensis HOM05D004145 ORTHO05D004879 1.7e-235 819.7 653 69.8
Actinidia30923 Actinidia chinensis HOM05D004145 ORTHO05D004879 1.0e-232 810.4 647 69.1
Oeu028497.4 Olea europaea HOM05D004145 ORTHO05D004879 1.0e-232 810.4 656 65.7
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 1.8e-232 809.7 675 66.4
Nitab4.5_0010351g0020 Nicotiana tabacum HOM05D004145 ORTHO05D004879 3.3e-231 805.4 650 68.6
Nn2g12613 Nelumbo nucifera HOM05D004145 ORTHO05D004879 1.7e-230 803.1 642 67.3
CAN.G134.208 Capsicum annuum HOM05D004145 ORTHO05D004879 9.1e-229 797.3 644 67.7
Ciclev10019027m.g Citrus clementina HOM05D004145 ORTHO05D004879 5.0e-227 791.6 632 68.5
Dinv04277 Davidia involucrata HOM05D004145 ORTHO05D004879 2.2e-222 776.2 577 73.3
RcHm_v2.0_Chr6g0273391 Rosa chinensis HOM05D004145 ORTHO05D004879 2.2e-222 776.2 653 66.0
Atru.chr2.638 Acer truncatum HOM05D004145 ORTHO05D004879 1.8e-221 773.1 644 67.4
Sc16g0010400 Simmondsia chinensis HOM05D004145 ORTHO05D004879 1.6e-220 770.0 649 63.6
Migut.H01121 Erythranthe guttata HOM05D004145 ORTHO05D004879 2.6e-220 769.2 640 66.1
HanXRQChr15g0469811 Helianthus annuus HOM05D004145 ORTHO05D004879 7.7e-220 767.7 642 65.9
MD00G1051200 Malus domestica HOM05D004145 ORTHO05D004879 8.5e-219 764.2 655 66.3
Sopen01g041760 Solanum pennellii HOM05D004145 ORTHO05D004879 2.5e-218 762.7 637 66.7
Lsat_1_v5_gn_6_96941 Lactuca sativa HOM05D004145 ORTHO05D004879 5.5e-218 761.5 639 65.3
Prupe.6G335900 Prunus persica HOM05D004145 ORTHO05D004879 5.5e-218 761.5 641 66.8
THA.LOC104805832 Tarenaya hassleriana HOM05D004145 ORTHO05D004879 2.7e-217 759.2 652 60.1
GSVIVG01026774001 Vitis vinifera HOM05D004145 ORTHO05D004879 2.7e-217 759.2 653 65.7
Solyc01g098180.3 Solanum lycopersicum HOM05D004145 ORTHO05D004879 6.1e-217 758.1 639 66.4
COL.COLO4_36032 Corchorus olitorius HOM05D004145 ORTHO05D004879 1.0e-216 757.3 646 65.9
QL03p001164 Quercus lobata HOM05D004145 ORTHO05D004879 4.0e-216 755.4 647 65.7
vmacro06192 Vaccinium macrocarpon HOM05D004145 ORTHO05D004879 6.7e-216 754.6 707 60.5
Hma1.2p1_1636F.1_g294830 Hydrangea macrophylla HOM05D004145 ORTHO05D004879 2.0e-215 753.1 652 65.3
MSTRG.2685 Avicennia marina HOM05D004145 ORTHO05D004879 5.7e-215 751.5 641 65.8
PGR004G0092 Punica granatum HOM05D004145 ORTHO05D004879 7.5e-215 751.1 632 65.3
FvH4_2g12670 Fragaria vesca HOM05D004145 ORTHO05D004879 1.3e-214 750.4 653 64.9
SGA_v2.0_scaffold80G25752 Striga asiatica HOM05D004145 ORTHO05D004879 1.7e-214 750.0 665 63.6
FAN27G3237 Fragaria x ananassa HOM05D004145 ORTHO05D004879 3.7e-214 748.8 653 64.6
Cc02_g32210 Coffea canephora HOM05D004145 ORTHO05D004879 4.8e-214 748.4 628 65.4
FAN15G1727 Fragaria x ananassa HOM05D004145 ORTHO05D004879 6.3e-214 748.0 653 64.6
TWI12G1275 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 8.2e-214 747.7 632 66.0
Sed0004488 Sechium edule HOM05D004145 ORTHO05D004879 4.5e-212 741.9 646 64.2
TWI56G0710 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 5.9e-212 741.5 635 63.8
VMungo0540G0740 Vigna mungo HOM05D004145 ORTHO05D004879 7.7e-212 741.1 648 63.4
Lj5g0001865 Lotus japonicus HOM05D004145 ORTHO05D004879 1.7e-211 740.0 649 63.8
Gohir.D13G104600 Gossypium hirsutum HOM05D004145 ORTHO05D004879 9.4e-210 734.2 644 63.7
Manes.09G159400 Manihot esculenta HOM05D004145 ORTHO05D004879 1.6e-209 733.4 639 64.5
Gohir.A13G101100 Gossypium hirsutum HOM05D004145 ORTHO05D004879 2.1e-209 733.0 644 64.0
Thecc.05G254300 Theobroma cacao HOM05D004145 ORTHO05D004879 2.7e-209 732.6 644 65.2
Gorai.013G117100 Gossypium raimondii HOM05D004145 ORTHO05D004879 3.6e-209 732.3 644 63.8
MD12G1232500 Malus domestica HOM05D004145 ORTHO05D004879 1.4e-208 730.3 652 65.5
MELO3C004345.2 Cucumis melo HOM05D004145 ORTHO05D004879 8.8e-208 727.6 650 62.5
Glyma.03G243100 Glycine max HOM05D004145 ORTHO05D004879 4.4e-207 725.3 646 62.4
FAN24G1676 Fragaria x ananassa HOM05D004145 ORTHO05D004879 7.5e-207 724.5 706 59.9
Aqoxy2G04020 Aquilegia oxysepala HOM05D004145 ORTHO05D004879 9.8e-207 724.2 648 63.4
CsaV3_2G004470 Cucumis sativus L. HOM05D004145 ORTHO05D004879 1.7e-206 723.4 647 62.4
Ca_12868_v3 Cicer arietinum L. HOM05D004145 ORTHO05D004879 2.2e-206 723.0 648 64.2
Phvul.006G097200 Phaseolus vulgaris HOM05D004145 ORTHO05D004879 2.2e-206 723.0 648 63.9
ECA246G2136 Erigeron canadensis HOM05D004145 ORTHO05D004879 6.3e-206 721.5 635 62.0
Nitab4.5_0000245g0100 Nicotiana tabacum HOM05D004145 ORTHO05D004879 1.8e-205 719.9 872 51.5
Potri.005G045200 Populus trichocarpa HOM05D004145 ORTHO05D004879 1.8e-205 719.9 630 65.1
Hund07348 Selenicereus undatus HOM05D004145 ORTHO05D004879 7.0e-205 718.0 768 54.9
Lalb_Chr15g0076981 Lupinus albus HOM05D004145 ORTHO05D004879 1.9e-202 709.9 647 62.0
Medtr7g115610 Medicago truncatula HOM05D004145 ORTHO05D004879 5.5e-202 708.4 648 59.6
PSO017G5505 Papaver somniferum HOM05D004145 ORTHO05D004879 5.5e-202 708.4 643 62.4
EL10Ac4g09963 Beta vulgaris HOM05D004145 ORTHO05D004879 2.1e-201 706.4 659 59.6
CDE05G0178 Ceratophyllum demersum HOM05D004145 ORTHO05D004879 2.1e-201 706.4 652 62.0
Eucgr.H04421 Eucalyptus grandis HOM05D004145 ORTHO05D004879 1.4e-200 703.7 637 64.7
CANSAT54G2505 Cannabis sativa HOM05D004145 ORTHO05D004879 4.0e-200 702.2 644 64.1
AUR62000308 Chenopodium quinoa HOM05D004145 ORTHO05D004879 8.9e-200 701.0 667 60.3
RcHm_v2.0_Chr2g0129391 Rosa chinensis HOM05D004145 ORTHO05D004879 2.6e-199 699.5 644 62.3
PSO675G1731 Papaver somniferum HOM05D004145 ORTHO05D004879 9.8e-199 697.6 638 61.9
Haze_14654 Corylus avellana HOM05D004145 ORTHO05D004879 2.7e-196 689.5 660 60.2
Haze_04291 Corylus avellana HOM05D004145 ORTHO05D004879 8.6e-195 684.5 636 62.7
ClCG07G016490 Citrullus lanatus HOM05D004145 ORTHO05D004879 5.6e-194 681.8 648 60.3
AUR62006653 Chenopodium quinoa HOM05D004145 ORTHO05D004879 4.7e-193 678.7 629 61.2
Sp4g17260 Schrenkiella parvula HOM05D004145 ORTHO05D004879 6.1e-193 678.3 644 60.2
A05p10730 Brassica napus HOM05D004145 ORTHO05D004879 1.0e-192 677.6 644 60.2
BolC4t22972H Brassica oleracea HOM05D004145 ORTHO05D004879 1.0e-192 677.6 650 59.8
BraA05t20017Z Brassica rapa HOM05D004145 ORTHO05D004879 3.1e-192 676.0 645 60.0
ATR0564G152 Amborella trichopoda HOM05D004145 ORTHO05D004879 1.3e-190 670.6 649 57.9
C04p13820 Brassica napus HOM05D004145 ORTHO05D004879 1.3e-190 670.6 653 61.1
Aa31sc654G10 Aethionema arabicum HOM05D004145 ORTHO05D004879 1.4e-189 667.2 652 59.2
CARHR129130 Cardamine hirsuta HOM05D004145 ORTHO05D004879 7.0e-189 664.8 641 58.8
AL4G30980 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 1.2e-188 664.1 645 60.5
Thhalv10016297m.g Eutrema salsugineum HOM05D004145 ORTHO05D004879 1.2e-188 664.1 633 60.0
Carub.0004s1666 Capsella rubella HOM05D004145 ORTHO05D004879 6.0e-188 661.8 651 58.8
AT2G34970 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 1.7e-187 660.2 645 59.7
arahy.Tifrunner.gnm1.ann1.N9EJ2X Arachis hypogaea HOM05D004145 ORTHO05D004879 3.0e-187 659.4 644 59.2
TPR.G33341 Trifolium pratense HOM05D004145 ORTHO05D004879 8.9e-184 647.9 657 57.4
arahy.Tifrunner.gnm1.ann1.Q65QWU Arachis hypogaea HOM05D004145 ORTHO05D004879 2.0e-183 646.7 653 58.2
BcaB02g09494 Brassica carinata HOM05D004145 ORTHO05D004879 2.0e-183 646.7 651 57.8
FAN20G3151 Fragaria x ananassa HOM05D004145 ORTHO05D004879 5.4e-181 638.6 671 57.7
Rhsim03G0245100 Rhododendron simsii HOM05D004145 ORTHO05D004879 3.0e-179 632.9 566 64.1
unitig_748.g8566 Utricularia gibba HOM05D004145 ORTHO05D004879 7.3e-178 628.2 650 56.2
Glyma.19G240600 Glycine max HOM05D004145 ORTHO05D004879 2.7e-172 609.8 466 73.4
Ah.06g195470 Amaranthus hybridus HOM05D004145 ORTHO05D004879 4.3e-170 602.4 643 54.9
Lj9A674T60 Lonicera japonica HOM05D004145 ORTHO05D004879 3.1e-168 596.3 447 73.4
BcaB02g09493 Brassica carinata HOM05D004145 ORTHO05D004879 1.2e-167 594.3 579 55.3
Carub.0007s2297 Capsella rubella HOM05D004145 ORTHO05D004879 2.6e-167 593.2 648 54.0
Os02g0812400 Oryza sativa ssp. japonica HOM05D004145 ORTHO05D004879 5.8e-167 592.0 646 51.7
Zm00001eb258570 Zea mays HOM05D004145 ORTHO05D004879 1.3e-166 590.9 646 52.5
Cpa.g.sc117.30 Carica papaya HOM05D004145 ORTHO05D004879 1.7e-166 590.5 468 70.7
AT4G18300 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 2.1e-164 583.6 648 55.1
AL7G36090 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 1.5e-162 577.4 649 53.9
Mapoly0056s0115 Marchantia polymorpha HOM05D004145 ORTHO05D004879 3.5e-156 556.2 670 51.8
FvH4_4g24061 Fragaria vesca HOM05D004145 ORTHO05D004879 3.1e-152 543.1 645 52.6
Sabra16G0314500 Salix brachista HOM05D004145 ORTHO05D004879 3.8e-150 536.2 571 53.4
Pp3c1_20030 Physcomitrium patens HOM05D004145 ORTHO05D004879 8.4e-150 535.0 668 49.4
SMO356G0330 Selaginella moellendorffii HOM05D004145 ORTHO05D004879 1.4e-149 534.3 652 50.6
RcHm_v2.0_Chr4g0430791 Rosa chinensis HOM05D004145 ORTHO05D004879 5.6e-146 522.3 650 52.3
HPP92_016926 Vanilla planifolia HOM05D004145 ORTHO05D004879 1.5e-143 514.2 628 49.4
CiPaw.13G133200 Carya illinoinensis HOM05D004145 ORTHO05D004879 3.4e-143 513.1 451 63.0
SHI18260 Sapria himalayana HOM05D004145 ORTHO05D004879 7.9e-140 501.9 472 60.4
AT3G02270 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 5.1e-139 499.2 630 50.0
FAN17G0778 Fragaria x ananassa HOM05D004145 ORTHO05D004879 1.3e-137 494.6 644 49.4
BcaC02g11578 Brassica carinata HOM05D004145 ORTHO05D004879 1.9e-133 480.7 382 64.9
AagrBONN_evm.TU.Sc2ySwM_228.295 Anthoceros agrestis HOM05D004145 ORTHO05D004879 1.8e-131 474.2 652 46.9
PSO541G4045 Papaver somniferum HOM05D004145 ORTHO05D004879 5.9e-127 459.1 650 45.5
PSO675G6749 Papaver somniferum HOM05D004145 ORTHO05D004879 1.1e-117 428.3 649 43.6
MD17G1228000 Malus domestica HOM05D004145 ORTHO05D004879 4.2e-117 426.4 428 59.8
FvH4_4g24260 Fragaria vesca HOM05D004145 ORTHO05D004879 1.5e-111 407.9 546 49.1
FAN07G1263 Fragaria x ananassa HOM05D000016 ORTHO05D004879 6.5e-110 402.5 620 45.2
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 1.5e-109 401.4 554 43.5
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 4.4e-106 389.8 618 38.8
MBI12_g33070_MAGBIO Magnolia biondii HOM05D004145 ORTHO05D004879 1.7e-105 387.9 278 69.4
BcaB06g28815 Brassica carinata HOM05D004145 ORTHO05D004879 5.0e-102 376.3 396 57.3
Sabra16G0314400 Salix brachista HOM05D004145 ORTHO05D004879 4.1e-96 356.7 484 45.0
ECA246G4181 Erigeron canadensis HOM05D004145 ORTHO05D004879 7.0e-96 355.9 643 41.1
MCO16G505 Micromonas commoda HOM05D004145 ORTHO05D004879 2.4e-88 330.9 695 37.6
Psat0s1551g0320 Pisum sativum HOM05D004145 ORTHO05D004879 2.0e-87 327.8 364 55.8
AL3G11540 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 7.2e-85 319.3 361 51.2
PSO339G4752 Papaver somniferum HOM05D004145 ORTHO05D004879 1.5e-77 295.0 370 49.2
Cre12.g502200 Chlamydomonas reinhardtii HOM05D004145 ORTHO05D004879 9.5e-77 292.4 706 33.3
Lsat_1_v5_gn_3_33301 Lactuca sativa HOM05D004145 ORTHO05D004879 1.3e-73 282.0 280 55.7
GSVIVG01032341001 Vitis vinifera HOM05D004145 ORTHO05D004879 1.3e-73 282.0 214 68.2
Sabra19G0021200 Salix brachista HOM05D004145 ORTHO05D004879 1.9e-72 278.1 335 50.1
Haze_00048 Corylus avellana HOM05D000222 ORTHO05D004879 1.6e-71 275.0 186 72.6
CBR_g23483 Chara braunii HOM05D004145 ORTHO05D004879 2.3e-70 271.2 765 31.4
GSVIVG01032295001 Vitis vinifera HOM05D004145 ORTHO05D004879 2.9e-65 254.2 188 68.6
BcaB06g28816 Brassica carinata HOM05D004145 ORTHO05D004879 6.6e-62 243.0 235 56.2
BolC4t27888H Brassica oleracea HOM05D004145 ORTHO05D004879 1.2e-58 232.3 278 47.5
Eucgr.L03047 Eucalyptus grandis HOM05D004145 ORTHO05D004879 2.6e-58 231.1 228 57.9
TAR365G0486 Trochodendron aralioides HOM05D004145 ORTHO05D004879 4.4e-58 230.3 218 58.7
Psat0s1551g0280 Pisum sativum HOM05D004145 ORTHO05D004879 6.0e-47 193.4 160 64.4
SEGI_02297 Sequoiadendron giganteum HOM05D004145 ORTHO05D004879 1.0e-46 192.6 148 60.1
Dinv01337 Davidia involucrata HOM05D004145 ORTHO05D004879 1.5e-45 188.7 141 70.2
HPP92_016860 Vanilla planifolia HOM05D004145 ORTHO05D004879 1.2e-42 179.1 134 67.2
Cpa.g.sc117.31 Carica papaya HOM05D004145 ORTHO05D004879 2.8e-36 157.9 140 59.3
TPR.G28883 Trifolium pratense HOM05D004145 ORTHO05D004879 6.9e-35 153.3 134 61.9
GSVIVG01032326001 Vitis vinifera HOM05D004145 ORTHO05D004879 3.2e-32 144.4 84 75.0
GSVIVG01032340001 Vitis vinifera HOM05D004145 ORTHO05D004879 7.1e-32 143.3 84 73.8
CARHR178030 Cardamine hirsuta HOM05D004145 ORTHO05D004879 1.1e-27 129.4 105 62.9
HPP92_016859 Vanilla planifolia HOM05D004145 ORTHO05D004879 1.6e-23 115.5 273 35.9
TPR.G33351 Trifolium pratense HOM05D004145 ORTHO05D004879 2.1e-23 115.2 72 73.6
SEGI_16626 Sequoiadendron giganteum HOM05D004145 ORTHO05D004879 6.7e-22 110.2 153 52.9
GSVIVG01032294001 Vitis vinifera HOM05D004145 ORTHO05D004879 1.6e-20 105.5 64 71.9
Glyma.11G150600 Glycine max HOM05D004145 ORTHO05D004879 1.4e-19 102.4 96 54.2
SEGI_03238 Sequoiadendron giganteum HOM05D004145 ORTHO05D004879 9.0e-19 99.8 144 42.4
MBI12_g33072_MAGBIO Magnolia biondii HOM05D004145 ORTHO05D004879 7.6e-18 96.7 70 70.0
CARHR177970 Cardamine hirsuta HOM05D004145 ORTHO05D004879 2.2e-17 95.1 169 40.2
DCAR_006953 Daucus carota HOM05D000287 ORTHO05D000319 2.2e-12 78.6 148 41.2
Psat3g029840 Pisum sativum HOM05D004145 ORTHO05D004879 2.2e-12 78.6 100 49.0
Psat0s2291g0040 Pisum sativum HOM05D004145 ORTHO05D004879 2.4e-11 75.1 88 44.3
TPR.G20882 Trifolium pratense HOM05D004145 ORTHO05D004879 6.5e-09 67.0 76 50.0
SHI18261 Sapria himalayana HOM05D004145 ORTHO05D004879 2.5e-08 65.1 92 39.1
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 1.2e-07 62.8 41 65.9
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 3.6e-07 61.2 41 63.4
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 1.0e-06 59.7 41 61.0
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 2.3e-06 58.5 299 22.7


User provided reference genes

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