Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 0.0e+00 1332.8 704 100.0
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1169.8 705 85.0
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1168.3 710 84.2
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1167.9 710 84.4
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1153.3 704 84.4
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 0.0e+00 1152.9 707 84.9
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1150.6 707 83.0
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1149.8 713 82.0
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 0.0e+00 1149.0 703 84.1
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1146.7 703 83.9
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1145.2 707 83.0
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1144.0 701 83.7
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1143.3 704 83.0
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1140.2 709 82.8
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1139.8 701 82.9
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1138.6 707 82.5
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1138.6 712 81.6
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1138.6 704 82.8
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 0.0e+00 1137.9 709 82.9
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1137.1 698 83.4
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1137.1 698 83.4
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1137.1 701 82.3
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1137.1 715 82.2
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 0.0e+00 1137.1 732 81.0
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 0.0e+00 1136.3 699 84.0
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1135.9 701 82.7
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 0.0e+00 1135.6 700 84.4
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1135.6 703 83.6
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1133.2 710 82.5
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1132.1 702 82.6
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 0.0e+00 1132.1 714 80.5
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 0.0e+00 1131.3 713 81.2
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 0.0e+00 1129.8 701 83.0
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1127.9 703 82.5
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1126.3 709 82.1
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1126.3 701 81.9
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1125.2 702 82.1
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1123.6 702 81.8
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1121.3 701 81.9
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 0.0e+00 1121.3 703 83.6
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 0.0e+00 1120.5 701 82.6
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 0.0e+00 1120.5 706 80.9
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 0.0e+00 1118.2 701 82.5
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1117.1 707 81.5
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 0.0e+00 1116.7 699 81.4
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 0.0e+00 1115.9 705 82.6
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 0.0e+00 1112.4 702 81.5
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 0.0e+00 1112.4 703 80.8
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 0.0e+00 1107.8 708 79.4
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 0.0e+00 1107.0 700 80.0
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1106.3 703 80.7
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 0.0e+00 1105.5 703 80.7
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1099.3 710 81.1
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 0.0e+00 1094.0 686 81.6
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 0.0e+00 1086.6 700 78.6
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 0.0e+00 1086.6 694 80.0
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 0.0e+00 1083.6 687 81.5
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 0.0e+00 1081.6 703 79.9
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 0.0e+00 1078.5 704 77.6
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 0.0e+00 1076.6 704 77.4
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 4.3e-311 1070.8 708 79.5
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 5.3e-309 1063.9 693 77.9
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.0e-308 1062.0 731 76.9
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 2.2e-307 1058.5 688 79.2
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 2.9e-307 1058.1 701 76.5
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 4.2e-306 1054.3 677 81.4
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 3.5e-305 1051.2 697 79.2
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.9e-303 1045.4 702 76.5
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 2.5e-303 1045.0 702 76.2
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 7.4e-303 1043.5 705 76.2
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 1.6e-302 1042.3 702 76.6
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 2.1e-302 1042.0 702 76.5
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 2.1e-302 1042.0 703 75.7
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 3.7e-302 1041.2 713 75.5
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 1.1e-301 1039.6 702 76.5
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 1.4e-301 1039.3 702 76.5
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 1.4e-301 1039.3 702 76.5
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 1.8e-301 1038.9 702 76.6
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 2.4e-301 1038.5 713 75.2
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 4.5e-300 1034.2 703 75.1
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 4.5e-300 1034.2 707 74.8
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 5.8e-300 1033.9 713 75.2
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 5.8e-300 1033.9 713 75.2
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 5.8e-300 1033.9 713 75.2
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 7.6e-300 1033.5 707 74.8
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 6.4e-299 1030.4 677 79.8
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 1.1e-298 1029.6 657 81.4
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 4.2e-298 1027.7 700 74.4
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 4.2e-298 1027.7 672 79.8
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 7.1e-298 1026.9 700 75.0
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 8.7e-296 1020.0 689 78.7
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 3.7e-294 1014.6 707 75.2
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.1e-293 1013.1 615 83.6
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 2.1e-289 998.8 614 83.2
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 1.6e-286 989.2 656 79.6
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 1.6e-286 989.2 687 76.0
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 4.8e-286 987.6 697 73.7
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 6.5e-283 977.2 689 73.3
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 1.1e-282 976.5 703 72.0
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.2e-282 974.5 706 72.7
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 1.2e-281 973.0 697 72.6
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 1.9e-279 965.7 663 75.1
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 4.3e-279 964.5 708 71.0
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.4e-277 958.7 573 85.3
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.1e-269 933.3 729 70.2
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 1.2e-268 929.9 590 81.0
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 6.5e-267 924.1 648 73.5
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 2.1e-257 892.5 543 84.9
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 1.8e-256 889.4 694 70.7
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 1.4e-245 853.2 725 65.8
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 2.3e-240 835.9 533 79.9
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 1.7e-238 829.7 711 63.3
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.0e-235 820.5 569 73.3
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.2e-222 776.2 541 76.9
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 8.3e-214 747.7 452 87.2
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 9.9e-199 697.6 694 53.9
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 3.8e-198 695.7 602 62.6
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 1.9e-186 656.8 639 53.7
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.1e-185 653.3 549 67.8
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 7.4e-178 628.2 519 65.7
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 5.3e-176 622.1 407 80.8
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.5e-175 620.5 396 82.6
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 8.2e-161 571.6 627 48.5
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.1e-156 557.0 652 46.8
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.8e-153 545.8 383 77.5
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.5e-151 540.8 641 46.2
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.2e-130 471.5 635 41.6
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.1e-128 463.4 631 41.5
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.2e-125 453.0 306 72.9
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 7.2e-125 452.2 719 40.9
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.1e-124 450.7 644 40.7
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.2e-123 446.0 625 41.8
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.1e-100 370.9 401 56.1
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 8.9e-99 365.5 401 50.4
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.6e-93 346.3 250 74.0
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.2e-82 312.0 219 66.2
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 6.7e-62 243.0 212 65.1
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.9e-53 214.9 173 69.9
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 9.4e-48 196.1 111 87.4
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.5e-40 170.2 138 58.7
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 4.5e-26 124.0 103 61.2
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 1.8e-22 112.1 93 61.3
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.3e-22 111.7 78 73.1
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 1.1e-19 102.8 58 82.8
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 3.1e-19 101.3 55 85.5
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 6.1e-15 87.0 58 74.1
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 6.1e-15 87.0 58 74.1
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 2.3e-14 85.1 58 74.1
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 1.5e-13 82.4 55 76.4
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 9.8e-13 79.7 55 74.5
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 2.2e-12 78.6 57 70.2


User provided reference genes

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