Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 1.2e-272 942.6 490 100.0
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 8.8e-178 627.5 503 69.0
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 1.0e-173 614.0 501 68.5
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 7.2e-172 607.8 501 68.1
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 9.7e-169 597.4 502 65.3
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 6.3e-168 594.7 503 64.6
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 1.5e-166 590.1 502 64.3
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 1.0e-165 587.4 495 64.8
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 2.2e-165 586.3 496 64.5
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 6.1e-163 578.2 500 63.2
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 1.7e-160 570.1 502 61.2
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 3.5e-158 562.4 501 64.1
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 4.5e-158 562.0 503 62.0
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 7.7e-158 561.2 501 61.1
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 1.9e-156 556.6 504 61.5
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.9e-156 556.6 571 56.6
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 5.5e-156 555.1 499 61.7
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 5.5e-156 555.1 501 60.7
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 5.5e-156 555.1 498 61.6
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 9.4e-156 554.3 501 60.7
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 9.4e-156 554.3 501 62.3
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 2.1e-155 553.1 502 61.6
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 2.7e-155 552.7 499 61.9
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 8.0e-155 551.2 502 61.2
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 1.0e-154 550.8 504 61.9
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 1.2e-153 547.4 502 61.4
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 3.4e-153 545.8 507 61.5
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 2.2e-152 543.1 504 60.5
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 8.3e-152 541.2 500 60.2
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 1.4e-151 540.4 502 59.4
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 1.8e-151 540.0 502 58.6
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 1.2e-150 537.3 517 58.0
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 2.2e-149 533.1 500 60.8
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 5.0e-149 531.9 503 59.0
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 1.5e-148 530.4 502 59.0
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 1.9e-148 530.0 502 58.0
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 2.5e-148 529.6 499 60.7
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 3.2e-148 529.3 502 58.6
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 3.2e-148 529.3 502 58.0
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 9.4e-148 527.7 501 58.3
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 1.6e-147 526.9 501 59.5
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 1.6e-147 526.9 500 59.4
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 4.7e-147 525.4 499 58.9
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 1.4e-146 523.9 508 58.1
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 4.0e-146 522.3 502 57.6
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 4.0e-146 522.3 494 58.5
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 5.2e-146 521.9 497 59.2
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 3.7e-144 515.8 502 57.0
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 6.3e-144 515.0 503 58.3
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 6.3e-144 515.0 503 58.4
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 3.1e-143 512.7 548 54.7
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 1.0e-141 507.7 503 57.3
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 1.7e-141 506.9 504 57.7
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 6.6e-141 505.0 499 56.7
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 8.6e-141 504.6 502 56.8
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 1.9e-140 503.4 502 56.2
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 1.4e-138 497.3 490 58.4
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 2.3e-138 496.5 501 56.3
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 3.0e-138 496.1 499 56.1
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 8.9e-138 494.6 495 55.6
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 1.2e-137 494.2 597 50.6
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 1.3e-136 490.7 499 54.7
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 6.4e-136 488.4 499 55.3
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 7.0e-135 485.0 499 55.3
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 7.8e-134 481.5 495 54.1
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 7.8e-134 481.5 495 54.1
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 1.3e-133 480.7 495 53.9
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 1.3e-133 480.7 495 53.9
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 2.3e-133 479.9 499 54.9
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 5.0e-133 478.8 538 52.4
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 6.6e-133 478.4 501 54.1
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 2.5e-132 476.5 498 54.6
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 2.8e-131 473.0 500 55.0
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 4.7e-131 472.2 498 54.8
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 1.1e-127 461.1 495 52.3
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 1.2e-121 441.0 499 49.7
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 2.9e-120 436.4 499 50.7
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 1.3e-117 427.6 360 64.7
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 1.1e-116 424.5 360 63.9
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.6e-115 420.6 512 49.8
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 1.8e-114 417.2 360 64.7
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 1.4e-111 407.5 514 46.7
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 2.0e-105 387.1 497 47.3
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 1.3e-104 384.4 394 55.8
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 2.1e-102 377.1 378 55.6
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 9.0e-98 361.7 360 56.1
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 3.2e-95 353.2 306 63.4
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 2.1e-83 313.9 490 39.8
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 2.8e-83 313.5 492 40.9
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 7.6e-81 305.4 327 52.9
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.8e-75 287.0 271 59.0
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 1.7e-59 234.6 505 35.2
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 1.7e-56 224.6 233 54.5
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 5.0e-48 196.4 497 30.2
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 1.1e-39 168.7 140 66.4
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 1.9e-39 167.9 518 28.0
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 5.5e-31 139.8 145 56.6
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 5.2e-29 133.3 145 53.8
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 3.1e-26 124.0 122 57.4
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 9.2e-26 122.5 143 48.3
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 4.7e-14 83.6 55 76.4
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 3.5e-09 67.4 123 41.5


User provided reference genes

Program Settings