Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 0.0e+00 1088.6 559 100.0
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 3.2e-261 904.8 560 81.4
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 1.0e-259 899.8 564 80.5
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 1.8e-259 899.0 556 81.5
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 4.4e-258 894.4 557 81.9
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.3e-257 892.9 557 81.7
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 1.4e-256 889.4 557 80.6
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 3.5e-255 884.8 559 80.0
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 1.3e-254 882.9 559 79.6
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 2.9e-254 881.7 558 78.9
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 8.6e-254 880.2 558 79.6
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.9e-253 879.0 559 79.1
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 4.2e-253 877.9 556 79.0
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.2e-252 876.3 559 79.2
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.6e-252 875.9 553 80.1
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 1.6e-252 875.9 560 78.9
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 8.0e-252 873.6 554 80.0
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 8.0e-252 873.6 558 79.0
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.4e-251 872.8 553 79.7
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 3.0e-251 871.7 557 79.4
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 3.0e-251 871.7 553 80.7
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 1.2e-250 869.8 560 78.6
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 3.4e-250 868.2 556 78.4
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 4.4e-250 867.8 558 79.0
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 4.4e-250 867.8 559 78.5
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 5.7e-250 867.5 556 78.6
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 8.3e-249 863.6 561 77.5
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 1.1e-248 863.2 555 78.6
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 5.4e-248 860.9 556 78.1
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.2e-247 859.8 556 77.9
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 1.6e-247 859.4 627 71.5
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.0e-247 859.0 556 77.9
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 3.5e-247 858.2 567 77.1
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.7e-246 855.9 558 78.0
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 8.6e-246 853.6 552 78.4
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 2.5e-245 852.0 558 77.6
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 3.3e-245 851.7 558 77.1
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 9.5e-245 850.1 557 77.4
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 1.6e-244 849.4 551 77.0
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 2.1e-244 849.0 558 77.6
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 2.8e-244 848.6 606 73.4
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.6e-244 848.2 556 76.6
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 4.7e-244 847.8 558 76.2
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.4e-243 846.3 573 75.9
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 6.8e-243 844.0 556 76.6
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 8.9e-243 843.6 556 76.3
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.6e-242 842.0 563 76.6
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 2.6e-242 842.0 549 76.5
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 5.8e-242 840.9 552 77.0
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 7.5e-242 840.5 559 76.0
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 2.2e-241 839.0 581 74.9
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 3.7e-241 838.2 549 76.3
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 4.9e-241 837.8 563 75.5
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 4.9e-241 837.8 555 77.5
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 2.4e-240 835.5 551 76.4
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 4.1e-240 834.7 548 75.7
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 4.1e-240 834.7 549 76.1
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 1.6e-239 832.8 548 75.9
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 2.7e-239 832.0 556 76.4
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 6.0e-239 830.9 557 75.4
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 6.0e-239 830.9 558 75.1
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 1.7e-238 829.3 551 76.0
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.7e-238 829.3 555 77.5
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 8.6e-238 827.0 558 75.4
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 1.1e-237 826.6 551 75.9
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 2.5e-237 825.5 569 73.5
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 3.3e-237 825.1 549 75.6
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 4.3e-237 824.7 559 75.5
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 7.3e-237 823.9 555 76.9
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 9.5e-237 823.5 538 78.8
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 1.6e-236 822.8 558 75.1
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 1.6e-236 822.8 558 75.1
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 1.4e-235 819.7 556 75.7
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.4e-235 819.7 560 76.1
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 3.1e-235 818.5 555 75.0
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 8.9e-235 817.0 551 75.7
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 2.6e-234 815.5 551 75.0
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 2.6e-234 815.5 552 75.7
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 9.8e-234 813.5 603 70.8
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 1.3e-233 813.1 543 76.4
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 1.3e-233 813.1 556 75.7
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 7.0e-232 807.4 538 76.0
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 7.0e-232 807.4 557 74.0
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 7.0e-232 807.4 557 73.6
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 2.0e-231 805.8 557 73.6
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 6.0e-231 804.3 557 71.6
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 7.8e-231 803.9 597 69.7
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 1.3e-230 803.1 554 73.1
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 1.3e-230 803.1 556 73.2
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 2.3e-230 802.4 557 73.2
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 5.0e-230 801.2 557 72.0
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.1e-229 800.0 564 72.0
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 1.9e-229 799.3 560 73.0
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 3.3e-229 798.5 551 73.0
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 2.1e-228 795.8 551 72.8
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 4.7e-228 794.7 556 75.0
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 3.1e-227 792.0 557 71.6
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 6.8e-227 790.8 557 71.8
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 6.8e-227 790.8 557 71.8
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 1.2e-226 790.0 557 71.6
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 3.4e-226 788.5 551 72.8
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 3.4e-226 788.5 542 73.1
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 7.5e-226 787.3 533 76.4
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 1.7e-225 786.2 554 71.5
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.9e-224 782.7 596 68.8
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 1.9e-224 782.7 640 65.8
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 3.2e-224 781.9 551 72.4
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 3.0e-222 775.4 555 71.7
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 3.3e-221 771.9 551 70.2
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 1.8e-219 766.1 533 72.6
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 2.4e-219 765.8 555 71.4
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 6.8e-219 764.2 454 84.6
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 3.2e-216 755.4 518 73.4
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 3.5e-215 751.9 554 67.7
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 1.1e-211 740.3 558 69.0
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 4.4e-210 734.9 561 67.0
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 7.1e-208 727.6 575 65.0
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 2.1e-204 716.1 473 75.9
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 8.4e-201 704.1 563 65.7
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 4.6e-199 698.4 476 73.7
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.6e-196 689.9 479 73.9
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 1.3e-190 670.2 553 61.7
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 1.1e-189 667.2 509 65.0
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 8.7e-182 641.0 548 59.7
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 2.1e-175 619.8 554 58.5
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.8e-171 606.7 413 75.8
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 1.6e-167 593.6 359 83.8
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 4.7e-159 565.5 393 72.0
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 5.2e-158 562.0 393 71.8
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 6.7e-158 561.6 393 71.8
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.1e-155 554.3 367 77.4
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 2.3e-142 510.0 556 48.9
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 1.8e-134 483.8 532 47.4
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 9.5e-128 461.5 334 71.9
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 2.8e-119 433.3 272 78.7
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 6.8e-118 428.7 313 72.8
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 3.9e-97 359.8 220 78.6
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 1.4e-83 314.7 195 76.4
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.3e-79 301.6 200 76.5
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 7.1e-67 259.2 195 69.2
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 1.9e-51 208.0 152 65.1
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.1e-50 204.5 141 71.6
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 1.4e-49 201.8 147 68.7
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 1.5e-45 188.3 117 77.8
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 5.5e-43 179.9 189 52.9
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 2.8e-31 141.0 85 87.1
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 1.2e-24 119.0 86 72.1
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 4.1e-22 110.5 91 56.0
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 4.1e-22 110.5 126 50.0
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 5.9e-21 106.7 83 65.1
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 1.1e-19 102.4 83 65.1
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 3.3e-19 100.9 87 59.8
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 1.6e-10 72.0 73 52.1
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 7.5e-08 63.2 110 36.4
VMungo0464G0759 Vigna mungo HOM05D004765 ORTHO05D005900 2.4e-06 58.2 34 76.5


User provided reference genes

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