Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006166 Daucus carota HOM05D004622 ORTHO05D005431 1.4e-37 159.1 78 100.0
Rhsim01G0204900 Rhododendron simsii HOM05D004622 ORTHO05D005431 4.5e-20 100.9 72 65.3
HanXRQChr11g0324161 Helianthus annuus HOM05D004622 ORTHO05D005431 8.6e-19 96.7 73 57.5
Nn2g14192 Nelumbo nucifera HOM05D004622 ORTHO05D005431 1.1e-18 96.3 71 60.6
CiPaw.13G134900 Carya illinoinensis HOM05D004622 ORTHO05D005431 2.5e-18 95.1 73 60.3
Nitab4.5_0001216g0120 Nicotiana tabacum HOM05D004622 ORTHO05D005431 2.5e-18 95.1 65 63.1
Nitab4.5_0003661g0010 Nicotiana tabacum HOM05D004622 ORTHO05D005431 2.5e-18 95.1 65 63.1
Cfa010005 Carpinus fangiana HOM05D004622 ORTHO05D005431 7.2e-18 93.6 74 58.1
Prupe.6G132300 Prunus persica HOM05D004622 ORTHO05D005431 7.2e-18 93.6 74 58.1
Thecc.09G281500 Theobroma cacao HOM05D004622 ORTHO05D005431 7.2e-18 93.6 74 58.1
CSS0039489 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 1.2e-17 92.8 76 59.2
Lj2C965T2 Lonicera japonica HOM05D004622 ORTHO05D005431 1.2e-17 92.8 66 57.6
DCAR_000195 Daucus carota HOM05D004622 ORTHO05D005431 1.6e-17 92.4 80 60.0
Manes.11G162600 Manihot esculenta HOM05D004622 ORTHO05D005431 1.6e-17 92.4 75 57.3
TWI75G1018 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 2.1e-17 92.0 75 57.3
Atru.chr3.3214 Acer truncatum HOM05D004622 ORTHO05D005431 2.8e-17 91.7 74 55.4
Ciclev10028879m.g Citrus clementina HOM05D004622 ORTHO05D005431 2.8e-17 91.7 74 55.4
Manes.04G003000 Manihot esculenta HOM05D004622 ORTHO05D005431 2.8e-17 91.7 75 54.7
MSTRG.18765 Avicennia marina HOM05D004622 ORTHO05D005431 3.6e-17 91.3 73 58.9
Dinv22834 Davidia involucrata HOM05D000892 ORTHO05D000750 3.6e-17 91.3 76 59.2
Lsat_1_v5_gn_2_59400 Lactuca sativa HOM05D004622 ORTHO05D005431 3.6e-17 91.3 77 53.2
MD03G1147600 Malus domestica HOM05D004622 ORTHO05D005431 3.6e-17 91.3 60 66.7
Oeu034007.1 Olea europaea HOM05D004622 ORTHO05D005431 3.6e-17 91.3 69 58.0
Oeu035435.1 Olea europaea HOM05D004622 ORTHO05D005431 3.6e-17 91.3 69 58.0
PGR102G1757 Punica granatum HOM05D004622 ORTHO05D005431 6.1e-17 90.5 75 54.7
TAR633G0983 Trochodendron aralioides HOM05D004622 ORTHO05D005431 6.1e-17 90.5 70 61.4
ClCG02G022240 Citrullus lanatus HOM05D004622 ORTHO05D005431 1.0e-16 89.7 76 56.6
Actinidia07251 Actinidia chinensis HOM05D000892 ORTHO05D005431 1.4e-16 89.4 76 56.6
Haze_23364 Corylus avellana HOM05D004622 ORTHO05D005431 1.4e-16 89.4 76 56.6
Duzib168G0112 Durio zibethinus HOM05D004622 ORTHO05D005431 1.4e-16 89.4 61 63.9
Duzib170G0788 Durio zibethinus HOM05D004622 ORTHO05D005431 2.3e-16 88.6 72 58.3
Eucgr.B03842 Eucalyptus grandis HOM05D004622 ORTHO05D005431 2.3e-16 88.6 70 58.6
CSS0048557 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 3.0e-16 88.2 70 58.6
DCAR_010339 Daucus carota HOM05D004622 ORTHO05D005431 3.0e-16 88.2 66 59.1
Gohir.A07G110600 Gossypium hirsutum HOM05D004622 ORTHO05D005431 3.0e-16 88.2 73 57.5
Gohir.D07G114300 Gossypium hirsutum HOM05D004622 ORTHO05D005431 3.0e-16 88.2 73 57.5
Gorai.001G122600 Gossypium raimondii HOM05D004622 ORTHO05D005431 3.0e-16 88.2 73 57.5
Lalb_Chr03g0028141 Lupinus albus HOM05D004622 ORTHO05D005431 3.0e-16 88.2 77 54.5
MSTRG.21036 Avicennia marina HOM05D004622 ORTHO05D005431 4.0e-16 87.8 61 57.4
CAN.G1524.7 Capsicum annuum HOM05D004622 ORTHO05D005431 4.0e-16 87.8 61 62.3
Solyc11g068530.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 4.0e-16 87.8 61 62.3
Sopen11g027250 Solanum pennellii HOM05D004622 ORTHO05D005431 4.0e-16 87.8 61 62.3
PGSC0003DMG400026354 Solanum tuberosum HOM05D004622 ORTHO05D005431 4.0e-16 87.8 61 62.3
CiPaw.14G099300 Carya illinoinensis HOM05D004622 ORTHO05D005431 5.2e-16 87.4 74 56.8
Nitab4.5_0000755g0020 Nicotiana tabacum HOM05D004622 ORTHO05D005431 5.2e-16 87.4 69 56.5
Nitab4.5_0006738g0040 Nicotiana tabacum HOM05D004622 ORTHO05D005431 5.2e-16 87.4 69 56.5
Sc21g0007040 Simmondsia chinensis HOM05D004622 ORTHO05D005431 6.8e-16 87.0 62 59.7
SGA_v2.0_scaffold22G09855 Striga asiatica HOM05D004622 ORTHO05D005431 6.8e-16 87.0 59 61.0
MSTRG.12372 Avicennia marina HOM05D004622 ORTHO05D005431 2.0e-15 85.5 61 59.0
Peaxi162Scf00040g00012 Petunia axillaris HOM05D004622 ORTHO05D005431 2.0e-15 85.5 68 55.9
QL01p012122 Quercus lobata HOM05D004622 ORTHO05D005431 2.0e-15 85.5 75 56.0
FAN11G1623 Fragaria x ananassa HOM05D004622 ORTHO05D005431 2.6e-15 85.1 58 62.1
MD11G1166300 Malus domestica HOM05D004622 ORTHO05D005431 2.6e-15 85.1 60 60.0
Phvul.005G123200 Phaseolus vulgaris HOM05D004622 ORTHO05D005431 2.6e-15 85.1 67 59.7
TWI31G0739 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 2.6e-15 85.1 75 53.3
Ca_01655_v3 Cicer arietinum L. HOM05D004622 ORTHO05D005431 4.4e-15 84.3 73 56.2
DCAR_012203 Daucus carota HOM05D004622 ORTHO05D005431 4.4e-15 84.3 68 57.4
TAR636G1327 Trochodendron aralioides HOM05D004622 ORTHO05D005431 4.4e-15 84.3 71 59.2
Medtr2g086590 Medicago truncatula HOM05D004622 ORTHO05D005431 5.7e-15 84.0 73 57.5
VMungo1080G1565 Vigna mungo HOM05D004622 ORTHO05D005431 5.7e-15 84.0 58 63.8
FvH4_3g25120 Fragaria vesca HOM05D004622 ORTHO05D005431 7.5e-15 83.6 58 62.1
TWI79G1499 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 7.5e-15 83.6 71 57.7
Actinidia35466 Actinidia chinensis HOM05D004622 ORTHO05D005431 9.8e-15 83.2 61 57.4
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 9.8e-15 83.2 73 50.7
Gohir.A09G096001 Gossypium hirsutum HOM05D004622 ORTHO05D005431 9.8e-15 83.2 70 55.7
Solyc06g074270.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 9.8e-15 83.2 65 60.0
Migut.N02485 Erythranthe guttata HOM05D004622 ORTHO05D005431 1.3e-14 82.8 61 57.4
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 1.7e-14 82.4 61 59.0
MELO3C014501.2 Cucumis melo HOM05D004622 ORTHO05D005431 2.2e-14 82.0 76 55.3
Gohir.D09G095666 Gossypium hirsutum HOM05D004622 ORTHO05D005431 2.2e-14 82.0 70 55.7
Lj3g0018609 Lotus japonicus HOM05D004622 ORTHO05D005431 2.9e-14 81.6 75 53.3
RcHm_v2.0_Chr5g0045661 Rosa chinensis HOM05D004622 ORTHO05D005431 2.9e-14 81.6 58 60.3
RcHm_v2.0_Chr5g0046341 Rosa chinensis HOM05D004622 ORTHO05D005431 2.9e-14 81.6 58 60.3
GSVIVG01036110001 Vitis vinifera HOM05D004622 ORTHO05D005431 2.9e-14 81.6 64 60.9
Glyma.12G185600 Glycine max HOM05D004622 ORTHO05D005431 3.7e-14 81.3 61 57.4
SalBow6G5234 Salvia bowleyana HOM05D004622 ORTHO05D005431 3.7e-14 81.3 59 57.6
Sabra09G0127000 Salix brachista HOM05D004622 ORTHO05D005431 4.9e-14 80.9 68 55.9
unitig_0.g1476 Utricularia gibba HOM05D000020 ORTHO05D000543 6.3e-14 80.5 61 57.4
Cpa.g.sc195.5 Carica papaya HOM05D004622 ORTHO05D005431 8.3e-14 80.1 71 50.7
PSO801G0264 Papaver somniferum HOM05D004622 ORTHO05D005431 8.3e-14 80.1 71 52.1
PSO339G0545 Papaver somniferum HOM05D004622 ORTHO05D005431 1.1e-13 79.7 72 55.6
Sopen06g030720 Solanum pennellii HOM05D004622 ORTHO05D005431 1.1e-13 79.7 62 59.7
PGSC0003DMG400005882 Solanum tuberosum HOM05D004622 ORTHO05D005431 1.1e-13 79.7 62 59.7
CANSAT54G2229 Cannabis sativa HOM05D004622 ORTHO05D005431 1.4e-13 79.3 62 58.1
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 1.4e-13 79.3 72 52.8
MBI17_g08325_MAGBIO Magnolia biondii HOM05D004622 ORTHO05D005431 1.4e-13 79.3 69 50.7
Os02g0534000 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 1.4e-13 79.3 69 52.2
PSO384G0540 Papaver somniferum HOM05D004622 ORTHO05D005431 1.8e-13 79.0 68 55.9
HPP92_003213 Vanilla planifolia HOM05D004622 ORTHO05D005431 2.4e-13 78.6 67 59.7
Zm00001eb242780 Zea mays HOM05D004622 ORTHO05D005431 2.4e-13 78.6 54 64.8
Cpa.g.sc195.4 Carica papaya HOM05D004622 ORTHO05D005431 3.2e-13 78.2 71 50.7
CsaV3_6G038370 Cucumis sativus L. HOM05D004622 ORTHO05D005431 3.2e-13 78.2 72 55.6
Potri.009G162800 Populus trichocarpa HOM05D004622 ORTHO05D005431 4.1e-13 77.8 68 54.4
ATR0820G124 Amborella trichopoda HOM05D004622 ORTHO05D005431 9.2e-13 76.6 59 59.3
Glyma.12G090100 Glycine max HOM05D004622 ORTHO05D005431 9.2e-13 76.6 68 51.5
Potri.004G201500 Populus trichocarpa HOM05D004622 ORTHO05D005431 9.2e-13 76.6 72 52.8
HPP92_006359 Vanilla planifolia HOM05D004622 ORTHO05D005431 1.2e-12 76.3 75 48.0
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 1.6e-12 75.9 74 52.7
ClCG01G012170 Citrullus lanatus HOM05D004622 ORTHO05D005431 2.0e-12 75.5 64 53.1
Migut.D02437 Erythranthe guttata HOM05D004622 ORTHO05D005431 2.0e-12 75.5 70 55.7
Lj3g0000197 Lotus japonicus HOM05D004622 ORTHO05D005431 2.0e-12 75.5 71 53.5
Glyma.11G182500 Glycine max HOM05D004622 ORTHO05D005431 2.7e-12 75.1 62 54.8
CDE04G1878 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 3.5e-12 74.7 72 51.4
Lsat_1_v5_gn_6_38921 Lactuca sativa HOM05D000892 ORTHO05D000750 4.6e-12 74.3 74 48.6
unitig_27.g25015 Utricularia gibba HOM05D004622 ORTHO05D005431 4.6e-12 74.3 61 54.1
Lsat_1_v5_gn_1_59220 Lactuca sativa HOM05D004622 ORTHO05D005431 5.9e-12 73.9 72 52.8
MELO3C004685.2 Cucumis melo HOM05D004622 ORTHO05D005431 7.8e-12 73.6 64 51.6
CsaV3_1G015000 Cucumis sativus L. HOM05D004622 ORTHO05D005431 7.8e-12 73.6 64 51.6
CsaV3_1G015910 Cucumis sativus L. HOM05D004622 ORTHO05D005431 7.8e-12 73.6 64 51.6
Zm00001eb092610 Zea mays HOM05D004622 ORTHO05D005431 7.8e-12 73.6 55 61.8
Aqoxy4G02755 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 1.3e-11 72.8 59 52.5
SGA_v2.0_scaffold177G39416 Striga asiatica HOM05D004622 ORTHO05D005431 1.7e-11 72.4 57 63.2
CAN.G919.33 Capsicum annuum HOM05D004622 ORTHO05D005431 5.0e-11 70.9 60 58.3
SGA_v2.0_scaffold295G47519 Striga asiatica HOM05D004622 ORTHO05D005431 5.0e-11 70.9 58 58.6
Aqoxy2G01109 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 1.1e-10 69.7 60 58.3
Zm00001eb083800 Zea mays HOM05D004622 ORTHO05D005431 1.1e-10 69.7 55 52.7
Sed0001344 Sechium edule HOM05D004622 ORTHO05D005431 1.5e-10 69.3 61 49.2
unitig_699.g19154 Utricularia gibba HOM05D004622 ORTHO05D005431 1.5e-10 69.3 53 58.5
EL10Ac7g15833 Beta vulgaris HOM05D004622 ORTHO05D005431 1.9e-10 68.9 66 50.0
ECA233G1222 Erigeron canadensis HOM05D000892 ORTHO05D000750 2.5e-10 68.6 62 50.0
Os12g0155100 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 3.3e-10 68.2 60 55.0
HPP92_009743 Vanilla planifolia HOM05D004622 ORTHO05D005431 3.3e-10 68.2 55 52.7
arahy.Tifrunner.gnm1.ann1.72VZ3I Arachis hypogaea HOM05D004622 ORTHO05D005431 9.5e-10 66.6 54 53.7
Os04g0413100 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 9.5e-10 66.6 55 52.7
TPR.G4535 Trifolium pratense HOM05D004622 ORTHO05D005431 1.2e-09 66.2 54 59.3
Os11g0153500 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 6.2e-09 63.9 52 57.7
HanXRQChr11g0346861 Helianthus annuus HOM05D004622 ORTHO05D005431 8.0e-09 63.5 69 46.4
Medtr4g052880 Medicago truncatula HOM05D004622 ORTHO05D005431 3.1e-08 61.6 58 50.0
Potri.013G027100 Populus trichocarpa HOM05D006966 ORTHO05D008111 4.0e-08 61.2 64 43.8
Duzib177G0559 Durio zibethinus HOM05D006966 ORTHO05D008111 5.2e-08 60.8 70 44.3
SEGI_39458 Sequoiadendron giganteum HOM05D004622 ORTHO05D005431 5.2e-08 60.8 73 39.7
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 1.2e-07 59.7 83 38.6
Psat5g258080 Pisum sativum HOM05D004622 ORTHO05D005431 1.5e-07 59.3 54 55.6
Aqoxy4G02752 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 2.0e-07 58.9 67 38.8
CANSAT54G0218 Cannabis sativa HOM05D006966 ORTHO05D008111 2.6e-07 58.5 61 41.0
Dinv40245 Davidia involucrata HOM05D000556 ORTHO05D008111 2.6e-07 58.5 64 40.6
FAN09G4667 Fragaria x ananassa HOM05D006966 ORTHO05D008111 2.6e-07 58.5 60 45.0
Gohir.A08G212500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 2.6e-07 58.5 73 39.7
Potri.005G037600 Populus trichocarpa HOM05D006966 ORTHO05D008111 3.4e-07 58.2 60 43.3
Ciclev10002008m.g Citrus clementina HOM05D006966 ORTHO05D008111 4.4e-07 57.8 65 43.1
FvH4_6g05230 Fragaria vesca HOM05D006966 ORTHO05D008111 4.4e-07 57.8 60 45.0
FAN02G1750 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.4e-07 57.8 60 45.0
FAN05G0025 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.4e-07 57.8 60 45.0
FAN05G1324 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.4e-07 57.8 60 45.0
FAN05G1352 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.4e-07 57.8 60 45.0
FAN14G0100 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.4e-07 57.8 60 45.0
FAN14G4059 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.4e-07 57.8 60 45.0
Gohir.D08G229500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 4.4e-07 57.8 73 39.7
Gorai.004G243700 Gossypium raimondii HOM05D006966 ORTHO05D008111 4.4e-07 57.8 73 39.7
Lj5g0008249 Lotus japonicus HOM05D006966 ORTHO05D008111 4.4e-07 57.8 63 44.4
A10p18420 Brassica napus HOM05D004622 ORTHO05D005431 5.8e-07 57.4 42 61.9
BraA10t43924Z Brassica rapa HOM05D004622 ORTHO05D005431 5.8e-07 57.4 42 61.9
Sabra05G0038600 Salix brachista HOM05D006966 ORTHO05D008111 5.8e-07 57.4 62 40.3
Cc02_g32560 Coffea canephora HOM05D006966 ORTHO05D008111 9.8e-07 56.6 63 36.5
Eucgr.H04442 Eucalyptus grandis HOM05D006966 ORTHO05D008111 9.8e-07 56.6 60 40.0
TPR.G17219 Trifolium pratense HOM05D004622 ORTHO05D005431 9.8e-07 56.6 68 42.6
Lj7P485T19 Lonicera japonica HOM05D006966 ORTHO05D008111 1.3e-06 56.2 60 41.7
Phvul.006G095100 Phaseolus vulgaris HOM05D006966 ORTHO05D008111 1.7e-06 55.8 65 44.6
CAN.G1134.3 Capsicum annuum HOM05D006966 ORTHO05D008111 2.2e-06 55.5 61 39.3
Cpa.g.sc48.3 Carica papaya HOM05D006966 ORTHO05D008111 2.2e-06 55.5 61 39.3
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 2.2e-06 55.5 64 39.1
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 2.2e-06 55.5 64 39.1
Hma1.2p1_0666F.1_g199360 Hydrangea macrophylla HOM05D006966 ORTHO05D008111 2.2e-06 55.5 56 42.9
TAR633G0886 Trochodendron aralioides HOM05D006966 ORTHO05D008111 2.2e-06 55.5 65 41.5
Nn3g21196 Nelumbo nucifera HOM05D006966 ORTHO05D008111 2.9e-06 55.1 58 39.7
SalBow3G2592 Salvia bowleyana HOM05D004622 ORTHO05D005431 2.9e-06 55.1 71 47.9
Atru.chr2.499 Acer truncatum HOM05D006966 ORTHO05D008111 3.7e-06 54.7 60 40.0
Ca_09380_v3 Cicer arietinum L. HOM05D006966 ORTHO05D008111 3.7e-06 54.7 61 42.6
Duzib128G0678 Durio zibethinus HOM05D006966 ORTHO05D008111 3.7e-06 54.7 68 38.2
Nitab4.5_0002848g0060 Nicotiana tabacum HOM05D006966 ORTHO05D008111 3.7e-06 54.7 61 39.3
RcHm_v2.0_Chr3g0453941 Rosa chinensis HOM05D006966 ORTHO05D008111 3.7e-06 54.7 60 43.3
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 4.9e-06 54.3 66 39.4
Thecc.05G299500 Theobroma cacao HOM05D006966 ORTHO05D008111 4.9e-06 54.3 56 46.4
CSS0005342 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 6.4e-06 53.9 57 42.1
VMungo0540G1150 Vigna mungo HOM05D006966 ORTHO05D008111 6.4e-06 53.9 58 48.3
AL1G65140 Arabidopsis lyrata HOM05D006966 ORTHO05D008111 8.3e-06 53.5 66 37.9
Hma1.2p1_0587F.1_g184220 Hydrangea macrophylla HOM05D004622 ORTHO05D005431 8.3e-06 53.5 34 73.5
Solyc01g098570.2 Solanum lycopersicum HOM05D006966 ORTHO05D008111 8.3e-06 53.5 61 39.3


User provided reference genes

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