Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 2.2e-188 662.1 335 100.0
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 6.5e-132 474.6 316 72.8
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 1.5e-128 463.4 314 71.0
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 2.2e-127 459.5 316 71.5
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 2.4e-126 456.1 316 69.6
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 3.4e-125 452.2 314 70.4
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 4.5e-125 451.8 316 70.6
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 2.2e-124 449.5 314 69.1
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 2.2e-124 449.5 316 67.1
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 5.0e-124 448.4 316 66.8
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.1e-123 447.2 318 69.5
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 3.2e-123 445.7 316 68.7
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 3.6e-122 442.2 316 68.4
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 7.9e-122 441.0 316 67.1
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 6.7e-121 438.0 316 66.5
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 8.8e-121 437.6 316 68.0
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 1.1e-120 437.2 316 67.4
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 2.0e-120 436.4 314 67.2
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 3.3e-120 435.6 316 67.4
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 4.4e-120 435.3 316 66.1
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 5.7e-120 434.9 321 66.7
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 7.4e-120 434.5 316 66.5
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 1.7e-119 433.3 316 67.1
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 1.7e-119 433.3 316 65.8
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 4.8e-119 431.8 316 66.1
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 8.2e-119 431.0 316 65.5
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 8.2e-119 431.0 314 67.5
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 1.6e-117 426.8 317 66.2
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 4.5e-117 425.2 316 65.2
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 1.7e-116 423.3 316 66.5
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 2.2e-116 422.9 316 64.2
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 5.0e-116 421.8 367 59.1
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 8.5e-116 421.0 316 63.9
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 1.5e-115 420.2 305 68.2
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 1.5e-115 420.2 316 64.2
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 4.2e-115 418.7 316 63.6
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 5.5e-115 418.3 316 64.6
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 7.2e-115 417.9 316 63.9
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 9.4e-115 417.5 316 63.6
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 4.7e-114 415.2 314 65.9
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 6.1e-114 414.8 314 65.6
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 6.1e-114 414.8 318 65.1
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 6.1e-114 414.8 316 64.9
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 6.1e-114 414.8 316 62.7
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 1.0e-113 414.1 313 65.5
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 2.3e-113 412.9 320 63.8
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 8.8e-113 411.0 316 63.6
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 2.6e-112 409.5 314 64.6
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 7.5e-112 407.9 318 63.2
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 2.2e-111 406.4 326 61.0
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 1.4e-110 403.7 316 62.7
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 2.4e-110 402.9 318 63.2
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 3.1e-110 402.5 314 62.1
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 4.1e-110 402.1 312 64.1
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 4.1e-110 402.1 316 62.3
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 2.0e-109 399.8 311 63.7
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 5.9e-109 398.3 316 61.4
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 1.3e-108 397.1 314 62.7
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 1.3e-108 397.1 314 63.1
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 3.8e-108 395.6 314 63.1
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 5.0e-108 395.2 313 63.3
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 6.5e-108 394.8 307 64.2
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 7.2e-107 391.3 316 57.9
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 2.7e-106 389.4 314 62.7
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 4.7e-106 388.7 317 61.8
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 1.8e-105 386.7 316 60.1
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 2.3e-105 386.3 317 58.4
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 4.0e-105 385.6 317 58.4
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 1.3e-103 380.6 345 55.4
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 1.3e-103 380.6 315 58.1
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 1.7e-103 380.2 315 58.1
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 4.8e-103 378.6 315 60.3
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 6.3e-103 378.3 315 57.8
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 6.3e-103 378.3 315 57.8
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 6.3e-103 378.3 316 61.1
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 1.4e-102 377.1 315 57.5
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 1.4e-102 377.1 314 57.3
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 2.4e-102 376.3 314 58.6
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 2.4e-102 376.3 318 58.2
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 3.1e-102 375.9 318 57.5
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 1.2e-101 374.0 314 57.0
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 4.5e-101 372.1 316 56.3
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 5.9e-101 371.7 314 56.4
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 2.3e-100 369.8 314 56.1
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 5.0e-100 368.6 316 59.2
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 5.5e-99 365.2 316 59.8
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 4.7e-98 362.1 364 51.1
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 1.2e-96 357.5 316 55.4
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 3.7e-95 352.4 325 56.0
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 1.0e-92 344.4 314 56.7
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 5.6e-91 338.6 316 55.4
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 4.0e-89 332.4 272 58.5
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 6.8e-89 331.6 306 53.9
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 1.6e-82 310.5 314 49.4
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 1.2e-74 284.3 308 48.4
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 2.1e-74 283.5 206 67.0
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 4.3e-67 259.2 322 46.9
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 8.9e-65 251.5 311 43.1
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 5.8e-64 248.8 218 58.3
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 8.4e-55 218.4 314 38.5
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 4.5e-48 196.1 203 53.2
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 1.7e-47 194.1 166 55.4
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 4.9e-47 192.6 126 72.2
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 9.6e-43 178.3 135 63.7
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 2.1e-34 150.6 112 57.1
HanXRQChr15g0481161 Helianthus annuus HOM05D005972 ORTHO05D007548 3.2e-30 136.7 115 58.3
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 1.3e-26 124.8 159 41.5
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 1.3e-26 124.8 159 41.5
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 7.6e-24 115.5 86 58.1
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 5.7e-19 99.4 126 41.3
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 2.8e-18 97.1 104 44.2
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 5.3e-17 92.8 82 59.8
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 3.8e-15 86.7 83 51.8
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 1.9e-14 84.3 59 59.3
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 2.5e-14 84.0 64 64.1
Zm00001eb076720 Zea mays HOM05D005972 ORTHO05D007548 2.1e-13 80.9 115 44.3
COL.COLO4_10012 Corchorus olitorius HOM05D005972 ORTHO05D007548 3.6e-13 80.1 74 56.8
A05p16910 Brassica napus HOM05D005972 ORTHO05D007548 6.1e-13 79.3 54 66.7
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 8.8e-12 75.5 72 54.2
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 2.0e-11 74.3 47 76.6
CSS0030864 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 8.2e-10 68.9 80 48.8
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 1.4e-09 68.2 44 75.0
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 7.0e-09 65.9 45 68.9
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 7.0e-09 65.9 44 72.7
PRCOL_00002557 Prasinoderma coloniale HOM05D001203 ORTHO05D021247 2.6e-08 63.9 213 29.1
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 7.7e-08 62.4 64 53.1
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 7.7e-08 62.4 48 62.5
FAN05G4725 Fragaria x ananassa HOM05D000883 ORTHO05D002942 1.7e-07 61.2 126 36.5
Ciclev10012180m.g Citrus clementina HOM05D000883 ORTHO05D002942 3.8e-07 60.1 127 37.0
Actinidia11556 Actinidia chinensis HOM05D000883 ORTHO05D002942 5.0e-07 59.7 128 37.5
Actinidia29072 Actinidia chinensis HOM05D000883 ORTHO05D002942 6.5e-07 59.3 128 36.7
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 8.5e-07 58.9 39 71.8
MD11G1056500 Malus domestica HOM05D000883 ORTHO05D002942 2.5e-06 57.4 110 34.5
COL.COLO4_29892 Corchorus olitorius HOM05D005972 ORTHO05D007548 3.2e-06 57.0 53 60.4
HPP92_000720 Vanilla planifolia HOM05D000883 ORTHO05D002942 7.2e-06 55.8 110 35.5
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 9.4e-06 55.5 130 31.5


User provided reference genes

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