Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006032 Daucus carota HOM05D006507 ORTHO05D007296 0.0e+00 2112.4 1075 100.0
CSS0009997 Camellia sinensis var. sinensis HOM05D006507 ORTHO05D007296 4.0e-82 310.8 1243 28.9
Actinidia24071 Actinidia chinensis HOM05D006507 ORTHO05D007296 7.0e-71 273.5 1213 27.2
Rhsim13G0091300 Rhododendron simsii HOM05D006507 ORTHO05D007296 1.9e-68 265.4 1280 28.0
TAR633G2802 Trochodendron aralioides HOM05D006507 ORTHO05D007296 1.0e-61 243.0 1205 28.3
Atru.chr3.3722 Acer truncatum HOM05D006507 ORTHO05D007296 5.2e-58 230.7 1339 25.9
Nitab4.5_0000270g0010 Nicotiana tabacum HOM05D006507 ORTHO05D007296 8.9e-58 229.9 1338 28.0
Lsat_1_v5_gn_2_25380 Lactuca sativa HOM05D006507 ORTHO05D007296 1.0e-53 216.5 1105 27.0
Atru.chr3.3727 Acer truncatum HOM05D006507 ORTHO05D007296 6.9e-50 203.8 597 32.2
TWI79G0725 Tripterygium wilfordii HOM05D006507 ORTHO05D007296 2.2e-48 198.7 1313 26.7
Lj2A1039T65 Lonicera japonica HOM05D006507 ORTHO05D007296 3.2e-47 194.9 1005 27.7
QL01p036413 Quercus lobata HOM05D006507 ORTHO05D007296 6.0e-46 190.7 506 34.4
FAN11G1966 Fragaria x ananassa HOM05D006507 ORTHO05D007296 1.0e-45 189.9 1373 26.3
Nitab4.5_0001698g0050 Nicotiana tabacum HOM05D006507 ORTHO05D007296 3.0e-45 188.3 502 35.7
AL8G36760 Arabidopsis lyrata HOM05D006507 ORTHO05D007296 6.6e-45 187.2 1247 24.2
Cfa011382 Carpinus fangiana HOM05D006507 ORTHO05D007296 8.7e-45 186.8 1362 25.4
FAN16G3496 Fragaria x ananassa HOM05D006507 ORTHO05D007296 8.7e-45 186.8 1367 25.2
PGR102G3212 Punica granatum HOM05D006507 ORTHO05D007296 4.3e-44 184.5 1308 25.5
SalBow3G2105 Salvia bowleyana HOM05D006507 ORTHO05D007296 7.3e-44 183.7 1126 25.8
COL.COLO4_25271 Corchorus olitorius HOM05D006507 ORTHO05D007296 9.6e-44 183.3 1396 25.3
C09p52640 Brassica napus HOM05D006507 ORTHO05D007296 6.9e-42 177.2 1246 25.9
Gohir.D07G120101 Gossypium hirsutum HOM05D006507 ORTHO05D007296 6.9e-42 177.2 1403 25.1
Sopen06g031820 Solanum pennellii HOM05D006507 ORTHO05D007296 1.5e-41 176.0 1198 25.5
Manes.11G139900 Manihot esculenta HOM05D006507 ORTHO05D007296 2.0e-41 175.6 555 32.1
Sp6g21800 Schrenkiella parvula HOM05D006507 ORTHO05D007296 9.9e-41 173.3 1295 24.9
Gorai.001G129300 Gossypium raimondii HOM05D006507 ORTHO05D007296 1.7e-40 172.6 1403 24.9
Sc21g0000130 Simmondsia chinensis HOM05D006507 ORTHO05D007296 2.9e-40 171.8 1373 25.2
A10p17300 Brassica napus HOM05D006507 ORTHO05D007296 4.9e-40 171.0 1282 24.4
CARHR273800 Cardamine hirsuta HOM05D006507 ORTHO05D007296 6.4e-40 170.6 1314 24.2
Haze_23947 Corylus avellana HOM05D006507 ORTHO05D007296 8.4e-40 170.2 549 31.7
BolC9t58131H Brassica oleracea HOM05D006507 ORTHO05D007296 1.4e-39 169.5 1247 25.4
Carub.0008s2088 Capsella rubella HOM05D006507 ORTHO05D007296 1.4e-39 169.5 1264 25.2
Thecc.09G262500 Theobroma cacao HOM05D006507 ORTHO05D007296 2.4e-39 168.7 459 35.9
MSTRG.12615 Avicennia marina HOM05D006507 ORTHO05D007296 4.2e-39 167.9 1102 25.7
PGSC0003DMG400007499 Solanum tuberosum HOM05D006507 ORTHO05D007296 4.2e-39 167.9 1308 24.3
Duzib170G0831 Durio zibethinus HOM05D006507 ORTHO05D007296 7.1e-39 167.2 1400 25.2
CiPaw.13G105600 Carya illinoinensis HOM05D006507 ORTHO05D007296 9.3e-39 166.8 976 27.5
BraA10t43814Z Brassica rapa HOM05D006507 ORTHO05D007296 3.5e-38 164.9 1248 25.2
AT5G60150 Arabidopsis thaliana HOM05D006507 ORTHO05D007296 8.7e-37 160.2 1304 23.7
CANSAT54G2524 Cannabis sativa HOM05D006507 ORTHO05D007296 3.3e-36 158.3 742 27.6
Aqoxy2G01879 Aquilegia oxysepala HOM05D006507 ORTHO05D007296 2.1e-35 155.6 1077 25.4
ClCG02G020740 Citrullus lanatus HOM05D006507 ORTHO05D007296 2.8e-35 155.2 1396 25.2
GSVIVG01025113001 Vitis vinifera HOM05D038408 ORTHO05D007296 3.7e-35 154.8 1205 24.7
Migut.N02633 Erythranthe guttata HOM05D006507 ORTHO05D007296 9.0e-34 150.2 957 25.2
Thhalv10012478m.g Eutrema salsugineum HOM05D006507 ORTHO05D007296 9.9e-33 146.7 1245 24.0
SGA_v2.0_scaffold80G25739 Striga asiatica HOM05D006507 ORTHO05D007296 1.7e-32 146.0 1084 24.3
Ca_19235_v3 Cicer arietinum L. HOM05D006507 ORTHO05D007296 8.4e-32 143.7 1328 24.8
Sed0026220 Sechium edule HOM05D006507 ORTHO05D007296 1.9e-31 142.5 436 33.7
THA.LOC104810833 Tarenaya hassleriana HOM05D006507 ORTHO05D007296 2.1e-30 139.0 1279 24.2
Gohir.A07G115600 Gossypium hirsutum HOM05D006507 ORTHO05D007296 7.9e-30 137.1 1267 22.4
Cc01_g11720 Coffea canephora HOM05D006507 ORTHO05D007296 3.0e-29 135.2 1239 24.8
FvH4_3g33790 Fragaria vesca HOM05D006507 ORTHO05D007296 3.0e-29 135.2 530 31.3
vmacro03160 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 9.6e-28 130.2 187 47.6
arahy.Tifrunner.gnm1.ann1.NP2AMW Arachis hypogaea HOM05D006507 ORTHO05D007296 1.3e-27 129.8 1364 23.3
vmacro03159 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 2.8e-27 128.6 94 68.1
HanXRQChr06g0183291 Helianthus annuus HOM05D006507 ORTHO05D007296 4.8e-27 127.9 178 46.1
Dinv32808 Davidia involucrata HOM05D006507 ORTHO05D007296 6.2e-27 127.5 93 65.6
Solyc06g075420.1 Solanum lycopersicum HOM05D006507 ORTHO05D007296 6.2e-27 127.5 171 45.0
MELO3C025723.2 Cucumis melo HOM05D006507 ORTHO05D007296 8.2e-27 127.1 464 31.0
CsaV3_6G021880 Cucumis sativus L. HOM05D006507 ORTHO05D007296 2.4e-26 125.6 806 25.2
Glyma.12G072900 Glycine max HOM05D006507 ORTHO05D007296 9.0e-26 123.6 476 31.1
FAN21G2403 Fragaria x ananassa HOM05D006507 ORTHO05D007296 1.2e-25 123.2 569 30.6
Oeu022272.1 Olea europaea HOM05D006507 ORTHO05D007296 2.0e-25 122.5 1160 23.9
MD03G1109500 Malus domestica HOM05D006507 ORTHO05D007296 4.5e-25 121.3 94 66.0
RcHm_v2.0_Chr5g0061361 Rosa chinensis HOM05D006507 ORTHO05D007296 5.8e-25 120.9 103 64.1
CAN.G1001.2 Capsicum annuum HOM05D006507 ORTHO05D007296 7.6e-25 120.6 222 37.4
PSO384G3963 Papaver somniferum HOM05D006507 ORTHO05D007296 7.6e-25 120.6 160 48.1
Aa31LG1G12330 Aethionema arabicum HOM05D006507 ORTHO05D007296 1.0e-24 120.2 443 31.6
ECA238G2561 Erigeron canadensis HOM05D006507 ORTHO05D007296 1.0e-24 120.2 264 32.6
Prupe.6G092200 Prunus persica HOM05D006507 ORTHO05D007296 2.2e-24 119.0 93 65.6
Glyma.11G150661 Glycine max HOM05D006507 ORTHO05D007296 1.1e-23 116.7 520 29.0
Actinidia08403 Actinidia chinensis HOM05D006507 ORTHO05D007296 2.5e-23 115.5 71 78.9
arahy.Tifrunner.gnm1.ann1.M2HQ4Q Arachis hypogaea HOM05D006507 ORTHO05D007296 2.5e-23 115.5 1372 21.4
RcHm_v2.0_Chr5g0061351 Rosa chinensis HOM05D006507 ORTHO05D007296 2.5e-23 115.5 219 41.6
CANSAT54G0008 Cannabis sativa HOM05D006507 ORTHO05D007296 3.2e-23 115.2 537 29.2
Cpa.g.sc139.58 Carica papaya HOM05D006507 ORTHO05D007296 5.5e-23 114.4 164 47.0
HanXRQChr06g0183281 Helianthus annuus HOM05D006507 ORTHO05D007296 7.1e-23 114.0 187 39.6
Lj3g0018374 Lotus japonicus HOM05D006507 ORTHO05D007296 9.3e-23 113.6 633 29.9
PSO339G6510 Papaver somniferum HOM05D006507 ORTHO05D007296 9.3e-23 113.6 350 32.6
Ciclev10027733m.g Citrus clementina HOM05D006507 ORTHO05D007296 2.1e-22 112.5 177 41.2
CAN.G1001.3 Capsicum annuum HOM05D006507 ORTHO05D007296 3.5e-22 111.7 218 40.8
Nn2g12985 Nelumbo nucifera HOM05D006507 ORTHO05D007296 3.5e-22 111.7 515 29.5
EL10Ac9g22402 Beta vulgaris HOM05D006507 ORTHO05D007296 6.0e-22 110.9 1055 23.9
Hma1.2p1_2156F.1_g315450 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 7.9e-22 110.5 106 57.5
Cpa.g.sc139.57 Carica papaya HOM05D006507 ORTHO05D007296 1.8e-21 109.4 235 35.7
Potri.005G131500 Populus trichocarpa HOM05D006507 ORTHO05D007296 2.3e-21 109.0 1328 22.3
Sabra05G0106900 Salix brachista HOM05D006507 ORTHO05D007296 5.1e-21 107.8 202 37.6
Lalb_Chr19g0137501 Lupinus albus HOM05D006507 ORTHO05D007296 1.1e-20 106.7 92 57.6
Medtr4g061110 Medicago truncatula HOM05D006507 ORTHO05D007296 7.4e-20 104.0 485 29.9
AUR62006495 Chenopodium quinoa HOM05D006507 ORTHO05D007296 4.8e-19 101.3 918 22.2
Os12g0102700 Oryza sativa ssp. japonica HOM05D006507 ORTHO05D007296 6.3e-19 100.9 93 50.5
VMungo1127G1622 Vigna mungo HOM05D006507 ORTHO05D007296 8.2e-19 100.5 519 27.4
Solyc06g075410.4 Solanum lycopersicum HOM05D006507 ORTHO05D007296 4.1e-18 98.2 221 38.5
TPR.G2995 Trifolium pratense HOM05D006507 ORTHO05D007296 6.9e-18 97.4 97 53.6
AUR62025040 Chenopodium quinoa HOM05D006507 ORTHO05D007296 2.0e-17 95.9 228 34.6
Actinidia07103 Actinidia chinensis HOM05D006507 ORTHO05D007296 3.4e-17 95.1 62 75.8
HPP92_026984 Vanilla planifolia HOM05D006507 ORTHO05D007296 4.5e-17 94.7 62 71.0
Psat7g223080 Pisum sativum HOM05D006507 ORTHO05D007296 1.7e-16 92.8 73 65.8
HPP92_015411 Vanilla planifolia HOM05D006507 ORTHO05D007296 2.2e-16 92.4 62 69.4
SEGI_16529 Sequoiadendron giganteum HOM05D006507 ORTHO05D007296 2.9e-16 92.0 63 63.5
Migut.N02632 Erythranthe guttata HOM05D006507 ORTHO05D007296 2.5e-15 89.0 98 54.1
MD03G1109700 Malus domestica HOM05D006507 ORTHO05D007296 3.2e-15 88.6 138 42.8
Sopen02g037950 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-14 85.5 157 40.8
Lalb_Chr19g0137491 Lupinus albus HOM05D006507 ORTHO05D007296 3.9e-13 81.6 204 38.2
Pp3c16_7200 Physcomitrium patens HOM05D034648 ORTHO05D007296 1.5e-12 79.7 80 48.8
Hma1.2p1_0840F.1_g226520 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 5.7e-12 77.8 53 67.9
AagrBONN_evm.TU.Sc2ySwM_368.2680 Anthoceros agrestis HOM05D006507 ORTHO05D007296 4.8e-11 74.7 118 38.1
Sopen02g037960 Solanum pennellii HOM05D006507 ORTHO05D007296 4.8e-11 74.7 73 56.2
Sc24g0004230 Simmondsia chinensis HOM05D009348 ORTHO05D010856 3.1e-10 72.0 130 41.5
ATR1159G075 Amborella trichopoda HOM05D006507 ORTHO05D007296 5.3e-10 71.2 972 21.2
Peaxi162Scf00072g00227 Petunia axillaris HOM05D006507 ORTHO05D007296 5.3e-10 71.2 70 60.0
HPP92_013898 Vanilla planifolia HOM05D003265 ORTHO05D003819 4.5e-09 68.2 100 37.0
Mapoly0001s0188 Marchantia polymorpha HOM05D006507 ORTHO05D007296 7.7e-09 67.4 58 58.6
Zm00001eb322540 Zea mays HOM05D003265 ORTHO05D003819 1.7e-08 66.2 103 36.9
Psat7g223120 Pisum sativum HOM05D006507 ORTHO05D007296 6.5e-08 64.3 239 30.5
CDE04G2211 Ceratophyllum demersum HOM05D034970 ORTHO05D007296 1.1e-07 63.5 156 35.3
Zm00001eb105840 Zea mays HOM05D003265 ORTHO05D003819 1.4e-07 63.2 165 27.9
Gohir.A01G217200 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.9e-07 62.8 156 35.9
Nn2g10657 Nelumbo nucifera HOM05D003265 ORTHO05D003819 1.9e-07 62.8 268 26.5
Os05g0121800 Oryza sativa ssp. japonica HOM05D003265 ORTHO05D003819 5.5e-07 61.2 494 23.3
Carub.0005s1987 Capsella rubella HOM05D003265 ORTHO05D003819 1.6e-06 59.7 73 46.6
CBR_g19214 Chara braunii HOM05D006507 ORTHO05D007296 1.6e-06 59.7 153 34.6
Thhalv10010259m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 1.6e-06 59.7 161 31.1
Gohir.D01G205900 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.6e-06 59.7 71 52.1
Gorai.002G250300 Gossypium raimondii HOM05D003265 ORTHO05D003819 1.6e-06 59.7 71 52.1
Cpa.g.sc114.39 Carica papaya HOM05D000666 ORTHO05D001431 2.1e-06 59.3 305 27.5
CiPaw.10G137500 Carya illinoinensis HOM05D003265 ORTHO05D003819 2.7e-06 58.9 157 33.1
MELO3C009314.2 Cucumis melo HOM05D003265 ORTHO05D003819 2.7e-06 58.9 570 22.6
CsaV3_3G035550 Cucumis sativus L. HOM05D003265 ORTHO05D003819 2.7e-06 58.9 557 24.1
Duzib128G1251 Durio zibethinus HOM05D003265 ORTHO05D003819 2.7e-06 58.9 159 35.2
Hma1.2p1_0660F.1_g197490 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 2.7e-06 58.9 71 46.5
Lj2A107T58 Lonicera japonica HOM05D003265 ORTHO05D003819 2.7e-06 58.9 67 50.7
CDE07G1131 Ceratophyllum demersum HOM05D003265 ORTHO05D003819 4.7e-06 58.2 74 44.6
HanXRQChr01g0027471 Helianthus annuus HOM05D003265 ORTHO05D003819 4.7e-06 58.2 112 39.3
CiPaw.01G276700 Carya illinoinensis HOM05D003265 ORTHO05D003819 6.1e-06 57.8 115 36.5
BcaC07g39697 Brassica carinata HOM05D003265 ORTHO05D003819 7.9e-06 57.4 190 32.6
BolC8t50462H Brassica oleracea HOM05D003265 ORTHO05D003819 7.9e-06 57.4 190 32.6


User provided reference genes

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