Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 3.1e-99 365.2 188 100.0
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 3.5e-50 202.2 188 61.7
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 3.5e-50 202.2 188 61.7
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 3.5e-50 202.2 188 61.7
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 9.5e-48 194.1 187 59.9
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 2.2e-44 183.0 188 58.0
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.9e-40 169.9 188 54.8
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 4.3e-40 168.7 189 55.0
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 1.8e-38 163.3 194 51.0
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 2.3e-38 162.9 184 53.8
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 4.0e-38 162.2 194 55.7
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 4.0e-38 162.2 189 53.4
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 5.2e-38 161.8 188 53.7
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 6.8e-38 161.4 185 56.8
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 1.2e-37 160.6 189 55.6
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 2.0e-37 159.8 189 52.4
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 4.4e-37 158.7 188 53.7
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 9.9e-37 157.5 189 51.9
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 1.3e-36 157.1 188 54.8
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 2.2e-36 156.4 188 50.5
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 2.9e-36 156.0 188 50.0
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 2.9e-36 156.0 188 54.8
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 2.9e-36 156.0 189 53.4
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 8.3e-36 154.5 187 50.8
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 8.3e-36 154.5 190 53.2
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 2.4e-35 152.9 188 52.1
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 2.4e-35 152.9 188 53.2
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 3.2e-35 152.5 184 52.2
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 5.4e-35 151.8 190 53.7
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 9.2e-35 151.0 188 52.7
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 1.2e-34 150.6 187 52.4
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 1.2e-34 150.6 188 52.1
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 2.1e-34 149.8 189 51.3
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 2.7e-34 149.4 189 51.3
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 4.6e-34 148.7 190 50.5
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 4.6e-34 148.7 188 52.7
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 1.0e-33 147.5 191 51.3
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 1.7e-33 146.7 188 50.0
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 3.0e-33 146.0 188 50.0
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 3.0e-33 146.0 192 51.6
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 3.0e-33 146.0 190 53.7
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 5.1e-33 145.2 183 50.8
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 5.1e-33 145.2 184 48.9
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 6.6e-33 144.8 185 53.0
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 8.6e-33 144.4 190 51.1
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 8.6e-33 144.4 188 50.5
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 8.6e-33 144.4 182 52.2
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 1.1e-32 144.1 188 50.0
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 1.5e-32 143.7 189 51.3
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 5.6e-32 141.7 188 48.9
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 1.2e-31 140.6 192 51.6
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 1.6e-31 140.2 182 52.2
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 2.8e-31 139.4 188 51.1
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 2.8e-31 139.4 184 48.9
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 2.8e-31 139.4 184 49.5
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 3.6e-31 139.0 190 50.0
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.7e-31 138.7 188 50.0
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 4.7e-31 138.7 188 50.0
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 8.1e-31 137.9 190 50.0
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 8.1e-31 137.9 190 48.4
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 1.1e-30 137.5 182 51.1
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 1.1e-30 137.5 189 46.6
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 1.4e-30 137.1 191 47.6
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 6.8e-30 134.8 184 51.1
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 1.2e-29 134.0 183 50.3
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 1.5e-29 133.7 190 46.3
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.0e-29 133.3 194 48.5
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 2.6e-29 132.9 187 50.3
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 5.8e-29 131.7 184 48.4
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 7.6e-29 131.3 189 46.0
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 9.9e-29 131.0 185 48.1
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 1.3e-28 130.6 190 49.5
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 1.3e-28 130.6 181 50.3
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 1.3e-28 130.6 189 46.0
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 1.7e-28 130.2 184 48.4
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 3.8e-28 129.0 187 49.7
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 3.8e-28 129.0 198 46.5
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 4.9e-28 128.6 190 48.4
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 1.4e-27 127.1 198 47.0
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 1.4e-27 127.1 178 46.6
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.2e-27 125.9 207 44.9
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 3.2e-27 125.9 185 47.0
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 4.1e-27 125.6 189 47.1
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 5.4e-27 125.2 190 46.3
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 5.4e-27 125.2 189 46.6
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 7.1e-27 124.8 188 45.2
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 9.2e-27 124.4 196 42.3
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 1.6e-26 123.6 189 45.0
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 2.1e-26 123.2 188 44.7
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 2.1e-26 123.2 188 43.1
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 6.0e-26 121.7 190 47.4
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 8.6e-25 117.9 183 47.5
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 1.1e-24 117.5 187 46.5
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 2.5e-24 116.3 106 62.3
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 4.3e-24 115.5 186 46.8
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 7.3e-24 114.8 188 43.6
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 7.3e-24 114.8 188 43.6
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 7.3e-24 114.8 188 43.6
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 1.6e-23 113.6 106 66.0
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 2.8e-23 112.8 175 47.4
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 3.6e-23 112.5 188 43.1
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 8.1e-23 111.3 189 42.9
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 2.4e-22 109.8 175 46.9
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 4.0e-22 109.0 190 41.1
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 5.8e-21 105.1 175 45.7
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 1.3e-20 104.0 188 44.7
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 1.7e-20 103.6 191 41.9
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 6.4e-20 101.7 190 40.5
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 1.1e-19 100.9 178 41.6
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 1.1e-19 100.9 192 42.2
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.1e-19 100.9 187 40.1
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 7.1e-19 98.2 192 41.1
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 9.3e-19 97.8 156 47.4
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 7.8e-18 94.7 192 39.6
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 2.3e-17 93.2 78 65.4
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 5.1e-17 92.0 192 39.6
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 6.6e-17 91.7 230 36.5
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 8.7e-17 91.3 172 39.5
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 9.6e-16 87.8 135 44.4
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 2.1e-15 86.7 82 56.1
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 4.0e-14 82.4 163 40.5
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 4.0e-14 82.4 171 37.4
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 9.0e-14 81.3 91 52.7
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 9.0e-14 81.3 91 52.7
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 2.6e-13 79.7 193 37.3
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 7.6e-13 78.2 155 40.6
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 2.9e-12 76.3 135 41.5
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 8.4e-12 74.7 191 38.2
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 9.3e-11 71.2 166 36.7
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 9.3e-11 71.2 166 36.7
Oeu002429.1 Olea europaea HOM05D004998 ORTHO05D006104 4.6e-10 68.9 59 66.1
Lalb_Chr01g0003571 Lupinus albus HOM05D004998 ORTHO05D006104 6.0e-10 68.6 139 37.4
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 2.3e-09 66.6 99 42.4
unitig_37.g12674 Utricularia gibba HOM05D004998 ORTHO05D006104 2.3e-09 66.6 142 35.9
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 2.5e-08 63.2 195 33.3
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 3.3e-08 62.8 183 32.8
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 4.3e-08 62.4 145 38.6
BcaC09g48433 Brassica carinata HOM05D004998 ORTHO05D006104 2.1e-07 60.1 218 31.2
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 4.8e-07 58.9 192 34.4
BolC1t04941H Brassica oleracea HOM05D004998 ORTHO05D006104 4.8e-07 58.9 230 30.0
arahy.Tifrunner.gnm1.ann1.MN3VL9 Arachis hypogaea HOM05D004998 ORTHO05D006104 3.1e-06 56.2 76 48.7


User provided reference genes

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