Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005929 Daucus carota HOM05D005875 ORTHO05D007213 2.3e-38 161.8 81 100.0
CAN.G394.82 Capsicum annuum HOM05D005875 ORTHO05D007213 2.4e-32 141.7 73 94.5
Nitab4.5_0000839g0140 Nicotiana tabacum HOM05D005875 ORTHO05D007213 2.4e-32 141.7 73 94.5
Nitab4.5_0008156g0010 Nicotiana tabacum HOM05D005875 ORTHO05D007213 2.4e-32 141.7 73 94.5
Peaxi162Scf00481g00628 Petunia axillaris HOM05D005875 ORTHO05D007213 2.4e-32 141.7 73 94.5
Dinv34304 Davidia involucrata HOM05D005875 ORTHO05D007213 3.1e-32 141.4 73 93.2
Dinv43007 Davidia involucrata HOM05D005875 ORTHO05D007213 3.1e-32 141.4 73 93.2
Dinv43090 Davidia involucrata HOM05D005875 ORTHO05D007213 3.1e-32 141.4 73 93.2
Migut.F01279 Erythranthe guttata HOM05D005875 ORTHO05D007213 3.1e-32 141.4 73 93.2
SalBow2G0925 Salvia bowleyana HOM05D005875 ORTHO05D007213 1.2e-31 139.4 73 91.8
Sopen06g032870 Solanum pennellii HOM05D005875 ORTHO05D007213 1.6e-31 139.0 73 91.8
PGSC0003DMG400030334 Solanum tuberosum HOM05D005875 ORTHO05D007213 1.6e-31 139.0 73 91.8
Ah.08g220240 Amaranthus hybridus HOM05D005875 ORTHO05D007213 2.7e-31 138.3 73 90.4
Actinidia08549 Actinidia chinensis HOM05D005875 ORTHO05D007213 4.5e-31 137.5 73 90.4
CSS0002992 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 4.5e-31 137.5 73 89.0
CSS0010627 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 4.5e-31 137.5 73 89.0
Solyc06g076460.4 Solanum lycopersicum HOM05D005875 ORTHO05D007213 4.5e-31 137.5 72 91.7
Atru.chr3.4025 Acer truncatum HOM05D005875 ORTHO05D007213 5.9e-31 137.1 72 90.3
EL10Ac7g16086 Beta vulgaris HOM05D005875 ORTHO05D007213 7.8e-31 136.7 73 89.0
Sc21g0006090 Simmondsia chinensis HOM05D005875 ORTHO05D007213 1.0e-30 136.3 73 90.4
Manes.01G167608 Manihot esculenta HOM05D005875 ORTHO05D007213 1.3e-30 136.0 72 88.9
Oeu017416.1 Olea europaea HOM05D005875 ORTHO05D007213 1.7e-30 135.6 71 91.5
PGR031G3365 Punica granatum HOM05D005875 ORTHO05D007213 1.7e-30 135.6 73 87.7
Hund04909 Selenicereus undatus HOM05D005875 ORTHO05D007213 1.7e-30 135.6 72 88.9
vmacro03020 Vaccinium macrocarpon HOM05D005875 ORTHO05D007213 1.7e-30 135.6 73 87.7
HanXRQChr11g0340611 Helianthus annuus HOM05D005875 ORTHO05D007213 2.9e-30 134.8 73 89.0
Hma1.2p1_0543F.1_g175400 Hydrangea macrophylla HOM05D005875 ORTHO05D007213 2.9e-30 134.8 71 90.1
MD03G1084600 Malus domestica HOM05D005875 ORTHO05D007213 2.9e-30 134.8 73 89.0
Nn2g11283 Nelumbo nucifera HOM05D005875 ORTHO05D007213 2.9e-30 134.8 73 87.7
Potri.009G037800 Populus trichocarpa HOM05D005875 ORTHO05D007213 2.9e-30 134.8 73 87.7
Rhsim13G0076300 Rhododendron simsii HOM05D005875 ORTHO05D007213 3.8e-30 134.4 73 87.7
TWI79G0668 Tripterygium wilfordii HOM05D005875 ORTHO05D007213 5.0e-30 134.0 73 86.3
Aqoxy1G00802 Aquilegia oxysepala HOM05D005875 ORTHO05D007213 6.6e-30 133.7 73 89.0
MBI14_g02873_MAGBIO Magnolia biondii HOM05D005875 ORTHO05D007213 6.6e-30 133.7 72 87.5
Manes.02G126800 Manihot esculenta HOM05D005875 ORTHO05D007213 6.6e-30 133.7 72 86.1
Oeu002453.3 Olea europaea HOM05D005875 ORTHO05D007213 6.6e-30 133.7 70 91.4
Ciclev10029658m.g Citrus clementina HOM05D005875 ORTHO05D007213 8.6e-30 133.3 72 87.5
ECA248G0827 Erigeron canadensis HOM05D005875 ORTHO05D007213 8.6e-30 133.3 73 87.7
Lsat_1_v5_gn_5_169860 Lactuca sativa HOM05D005875 ORTHO05D007213 8.6e-30 133.3 72 88.9
CDE09G0926 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 2.5e-29 131.7 73 86.3
Lalb_Chr19g0138001 Lupinus albus HOM05D005875 ORTHO05D007213 2.5e-29 131.7 73 84.9
unitig_60.g25692 Utricularia gibba HOM05D005875 ORTHO05D007213 3.3e-29 131.3 73 86.3
HPP92_019857 Vanilla planifolia HOM05D005875 ORTHO05D007213 3.3e-29 131.3 73 84.9
CANSAT54G1476 Cannabis sativa HOM05D005875 ORTHO05D007213 4.3e-29 131.0 73 84.9
CiPaw.13G087500 Carya illinoinensis HOM05D005875 ORTHO05D007213 4.3e-29 131.0 73 84.9
Prupe.6G067900 Prunus persica HOM05D005875 ORTHO05D007213 4.3e-29 131.0 73 84.9
Thecc.09G312900 Theobroma cacao HOM05D005875 ORTHO05D007213 4.3e-29 131.0 72 86.1
Glyma.13G339300 Glycine max HOM05D005875 ORTHO05D007213 5.6e-29 130.6 73 83.6
MD11G1092100 Malus domestica HOM05D005875 ORTHO05D007213 5.6e-29 130.6 73 84.9
Phvul.L008443 Phaseolus vulgaris HOM05D005875 ORTHO05D007213 5.6e-29 130.6 73 83.6
arahy.Tifrunner.gnm1.ann1.L8JNUU Arachis hypogaea HOM05D005875 ORTHO05D007213 7.3e-29 130.2 77 77.9
RcHm_v2.0_Chr5g0066881 Rosa chinensis HOM05D005875 ORTHO05D007213 7.3e-29 130.2 73 83.6
VMungo1080G0472 Vigna mungo HOM05D005875 ORTHO05D007213 7.3e-29 130.2 72 84.7
arahy.Tifrunner.gnm1.ann1.0PDV4E Arachis hypogaea HOM05D005875 ORTHO05D007213 1.2e-28 129.4 73 82.2
CDE02G2526 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 1.2e-28 129.4 73 84.9
Duzib170G0534 Durio zibethinus HOM05D005875 ORTHO05D007213 1.2e-28 129.4 72 84.7
Psat7g211880 Pisum sativum HOM05D005875 ORTHO05D007213 1.2e-28 129.4 73 80.8
TPR.G23613 Trifolium pratense HOM05D005875 ORTHO05D007213 1.2e-28 129.4 73 82.2
Ca_29565_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 1.6e-28 129.0 73 80.8
Medtr4g064903 Medicago truncatula HOM05D005875 ORTHO05D007213 1.6e-28 129.0 73 80.8
Cc01_g13510 Coffea canephora HOM05D005875 ORTHO05D007213 2.8e-28 128.3 73 83.6
FAN25G1682 Fragaria x ananassa HOM05D005875 ORTHO05D007213 2.8e-28 128.3 73 83.6
Duzib168G0895 Durio zibethinus HOM05D005875 ORTHO05D007213 3.6e-28 127.9 72 83.3
Duzib168G1854 Durio zibethinus HOM05D005875 ORTHO05D007213 3.6e-28 127.9 72 83.3
Glyma.15G035100 Glycine max HOM05D005875 ORTHO05D007213 3.6e-28 127.9 73 80.8
QL01p028144 Quercus lobata HOM05D005875 ORTHO05D007213 3.6e-28 127.9 73 83.6
Ca_20611_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 4.7e-28 127.5 72 80.6
Gohir.A13G225700 Gossypium hirsutum HOM05D005875 ORTHO05D007213 4.7e-28 127.5 72 83.3
Gohir.D13G231100 Gossypium hirsutum HOM05D005875 ORTHO05D007213 4.7e-28 127.5 72 83.3
Gorai.013G261600 Gossypium raimondii HOM05D005875 ORTHO05D007213 4.7e-28 127.5 72 83.3
Lj3g0010434 Lotus japonicus HOM05D005875 ORTHO05D007213 4.7e-28 127.5 73 83.6
Sed0009265 Sechium edule HOM05D005875 ORTHO05D007213 6.1e-28 127.1 73 82.2
Haze_24201 Corylus avellana HOM05D005875 ORTHO05D007213 1.0e-27 126.3 72 83.3
FvH4_3g37160 Fragaria vesca HOM05D005875 ORTHO05D007213 1.4e-27 125.9 73 82.2
FAN11G0304 Fragaria x ananassa HOM05D005875 ORTHO05D007213 1.4e-27 125.9 73 82.2
FAN16G0494 Fragaria x ananassa HOM05D005875 ORTHO05D007213 1.4e-27 125.9 73 82.2
FAN21G1946 Fragaria x ananassa HOM05D005875 ORTHO05D007213 1.4e-27 125.9 73 82.2
THA.LOC109115974 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 1.8e-27 125.6 72 83.3
ClCG03G001200 Citrullus lanatus HOM05D005875 ORTHO05D007213 2.3e-27 125.2 73 80.8
Duzib150G0367 Durio zibethinus HOM05D005875 ORTHO05D007213 2.3e-27 125.2 72 81.9
Aa31LG1G12030 Aethionema arabicum HOM05D005875 ORTHO05D007213 1.5e-26 122.5 72 80.6
THA.LOC104799420 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 1.5e-26 122.5 72 80.6
Sed0004662 Sechium edule HOM05D005875 ORTHO05D007213 2.0e-26 122.1 72 80.6
Mapoly0001s0456 Marchantia polymorpha HOM05D005875 ORTHO05D007213 2.6e-26 121.7 73 78.1
PSO017G5786 Papaver somniferum HOM05D005875 ORTHO05D007213 2.6e-26 121.7 73 78.1
PSO478G4319 Papaver somniferum HOM05D005875 ORTHO05D007213 2.6e-26 121.7 73 78.1
AUR62028437 Chenopodium quinoa HOM05D005875 ORTHO05D007213 5.7e-26 120.6 72 77.8
AUR62041948 Chenopodium quinoa HOM05D005875 ORTHO05D007213 5.7e-26 120.6 72 77.8
ATR0210G023 Amborella trichopoda HOM05D005875 ORTHO05D007213 7.5e-26 120.2 73 76.7
AagrBONN_evm.TU.Sc2ySwM_117.1366 Anthoceros agrestis HOM05D005875 ORTHO05D007213 1.3e-25 119.4 73 76.7
SMO137G0055 Selaginella moellendorffii HOM05D005875 ORTHO05D007213 2.9e-25 118.2 73 76.7
CARHR285400 Cardamine hirsuta HOM05D005875 ORTHO05D007213 4.9e-25 117.5 77 72.7
SEGI_34558 Sequoiadendron giganteum HOM05D005875 ORTHO05D007213 4.9e-25 117.5 73 74.0
Gohir.A03G046200 Gossypium hirsutum HOM05D005875 ORTHO05D007213 6.4e-25 117.1 74 77.0
Os11g0707700 Oryza sativa ssp. japonica HOM05D005875 ORTHO05D007213 2.4e-24 115.2 67 80.6
Zm00001eb371730 Zea mays HOM05D005875 ORTHO05D007213 3.2e-24 114.8 75 74.7
BcaB01g04606 Brassica carinata HOM05D005875 ORTHO05D007213 4.1e-24 114.4 68 79.4
A03p11880 Brassica napus HOM05D005875 ORTHO05D007213 4.1e-24 114.4 68 79.4
A10p16360 Brassica napus HOM05D005875 ORTHO05D007213 4.1e-24 114.4 68 77.9
C03p13940 Brassica napus HOM05D005875 ORTHO05D007213 4.1e-24 114.4 68 79.4
BolC3t13842H Brassica oleracea HOM05D005875 ORTHO05D007213 4.1e-24 114.4 68 79.4
BraA03t10499Z Brassica rapa HOM05D005875 ORTHO05D007213 4.1e-24 114.4 68 79.4
BraA10t43722Z Brassica rapa HOM05D005875 ORTHO05D007213 4.1e-24 114.4 68 77.9
Sp6g20850 Schrenkiella parvula HOM05D005875 ORTHO05D007213 4.1e-24 114.4 68 77.9
AL8G35550 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 5.4e-24 114.0 68 77.9
AT5G59140 Arabidopsis thaliana HOM05D005875 ORTHO05D007213 5.4e-24 114.0 68 77.9
C09p51420 Brassica napus HOM05D005875 ORTHO05D007213 5.4e-24 114.0 68 77.9
BolC9t58002H Brassica oleracea HOM05D005875 ORTHO05D007213 5.4e-24 114.0 68 77.9
Thhalv10015122m.g Eutrema salsugineum HOM05D005875 ORTHO05D007213 5.4e-24 114.0 68 77.9
TAR369G0127 Trochodendron aralioides HOM05D005875 ORTHO05D007213 9.2e-24 113.2 73 74.0
BcaC04g19811 Brassica carinata HOM05D005875 ORTHO05D007213 1.2e-23 112.8 68 76.5
Pp3c1_40610 Physcomitrium patens HOM05D005875 ORTHO05D007213 1.6e-23 112.5 73 69.9
CBR_g20299 Chara braunii HOM05D005875 ORTHO05D007213 3.5e-23 111.3 77 67.5
Gorai.003G127900 Gossypium raimondii HOM05D005875 ORTHO05D007213 4.6e-23 110.9 72 70.8
Eucgr.A01573 Eucalyptus grandis HOM05D005875 ORTHO05D007213 5.9e-23 110.5 116 55.2
Carub.0008s1981 Capsella rubella HOM05D005875 ORTHO05D007213 1.0e-22 109.8 68 75.0
Pp3c17_23040 Physcomitrium patens HOM05D005875 ORTHO05D007213 3.0e-22 108.2 69 72.5
Cre01.g061442 Chlamydomonas reinhardtii HOM05D005875 ORTHO05D007213 9.5e-21 103.2 73 67.1
CsaV3_1G035700 Cucumis sativus L. HOM05D005875 ORTHO05D007213 9.5e-21 103.2 58 81.0
BcaB01g04618 Brassica carinata HOM05D005875 ORTHO05D007213 1.6e-20 102.4 60 78.3
Actinidia12881 Actinidia chinensis HOM05D005875 ORTHO05D007213 3.6e-20 101.3 57 87.7
arahy.Tifrunner.gnm1.ann1.02RT51 Arachis hypogaea HOM05D005875 ORTHO05D007213 5.2e-19 97.4 62 77.4
GSVIVG01024863001 Vitis vinifera HOM05D005875 ORTHO05D007213 5.8e-18 94.0 49 87.8
PRCOL_00005420 Prasinoderma coloniale HOM05D005875 ORTHO05D007213 6.4e-17 90.5 67 59.7
BcaB08g36282 Brassica carinata HOM05D005875 ORTHO05D007213 1.9e-16 89.0 59 71.2
AL48U10050 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 2.4e-16 88.6 123 43.1
Gohir.D03G120951 Gossypium hirsutum HOM05D005875 ORTHO05D007213 2.4e-16 88.6 72 63.9
MCO15G569 Micromonas commoda HOM05D005875 ORTHO05D007213 1.0e-14 83.2 65 55.4
arahy.Tifrunner.gnm1.ann1.M3Y99M Arachis hypogaea HOM05D005875 ORTHO05D007213 1.4e-11 72.8 54 72.2
Cpa.g.sc81.58 Carica papaya HOM05D005875 ORTHO05D007213 5.2e-11 70.9 37 91.9
SGA_v2.0_scaffold104G30156 Striga asiatica HOM05D005875 ORTHO05D007213 2.0e-10 68.9 35 85.7
MELO3C020599.2 Cucumis melo HOM05D005875 ORTHO05D007213 1.3e-09 66.2 36 75.0
Haze_27721 Corylus avellana HOM05D005875 ORTHO05D007213 1.7e-09 65.9 71 46.5


User provided reference genes

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