Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005880 Daucus carota HOM05D003369 ORTHO05D020257 4.6e-81 304.7 174 100.0
DCAR_007356 Daucus carota HOM05D003369 ORTHO05D004089 1.5e-60 236.5 174 81.0
TWI09G0152 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 8.5e-43 177.6 174 67.2
TWI53G1724 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 1.9e-42 176.4 176 64.8
Actinidia31631 Actinidia chinensis HOM05D003369 ORTHO05D004089 4.2e-42 175.3 175 64.6
Ca_09969_v3 Cicer arietinum L. HOM05D003369 ORTHO05D004089 5.5e-42 174.9 173 64.2
Actinidia13643 Actinidia chinensis HOM05D003369 ORTHO05D004089 2.7e-41 172.6 175 65.1
Ciclev10030740m.g Citrus clementina HOM05D003369 ORTHO05D004089 2.7e-41 172.6 151 72.8
Glyma.09G252000 Glycine max HOM05D003369 ORTHO05D004089 2.7e-41 172.6 174 62.1
TAR633G0919 Trochodendron aralioides HOM05D003369 ORTHO05D004089 8.0e-41 171.0 177 63.8
QL05p063633 Quercus lobata HOM05D003369 ORTHO05D004089 1.8e-40 169.9 174 64.4
RcHm_v2.0_Chr4g0447001 Rosa chinensis HOM05D003369 ORTHO05D004089 2.3e-40 169.5 178 66.3
Lj5g0006652 Lotus japonicus HOM05D003369 ORTHO05D004089 3.0e-40 169.1 178 62.4
Prupe.1G349800 Prunus persica HOM05D003369 ORTHO05D004089 3.0e-40 169.1 180 63.9
Thecc.10G184000 Theobroma cacao HOM05D003369 ORTHO05D004089 6.7e-40 167.9 181 63.0
VMungo1383G1217 Vigna mungo HOM05D003369 ORTHO05D004089 6.7e-40 167.9 170 62.4
Rhsim03G0153200 Rhododendron simsii HOM05D003369 ORTHO05D004089 1.2e-39 167.2 172 62.8
Eucgr.J00108 Eucalyptus grandis HOM05D003369 ORTHO05D004089 1.5e-39 166.8 180 62.8
Gohir.D06G186800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 1.5e-39 166.8 176 63.6
Glyma.18G240600 Glycine max HOM05D003369 ORTHO05D004089 2.0e-39 166.4 173 61.8
vmacro06898 Vaccinium macrocarpon HOM05D003369 ORTHO05D004089 2.6e-39 166.0 172 63.4
Gorai.010G219100 Gossypium raimondii HOM05D003369 ORTHO05D004089 4.4e-39 165.2 178 62.4
Potri.013G090500 Populus trichocarpa HOM05D003369 ORTHO05D004089 7.5e-39 164.5 180 63.3
Hma1.2p1_0264F.1_g106040 Hydrangea macrophylla HOM05D003369 ORTHO05D004089 9.7e-39 164.1 180 63.9
Rhsim04G0219100 Rhododendron simsii HOM05D003369 ORTHO05D004089 1.3e-38 163.7 164 64.6
Lj8A53T101 Lonicera japonica HOM05D003369 ORTHO05D004089 1.7e-38 163.3 182 62.1
Phvul.008G055600 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 2.8e-38 162.5 174 59.2
Sed0008109 Sechium edule HOM05D003369 ORTHO05D004089 2.8e-38 162.5 172 63.4
ECA232G1960 Erigeron canadensis HOM05D003369 ORTHO05D004089 3.7e-38 162.2 162 65.4
PSO017G0651 Papaver somniferum HOM05D003369 ORTHO05D004089 8.2e-38 161.0 173 64.7
CSS0036715 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 1.1e-37 160.6 166 62.0
Duzib114G1008 Durio zibethinus HOM05D003369 ORTHO05D004089 1.1e-37 160.6 183 60.7
Medtr6g086565 Medicago truncatula HOM05D003369 ORTHO05D004089 1.1e-37 160.6 160 62.5
Gohir.A06G179800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 1.8e-37 159.8 176 61.9
GSVIVG01032663001 Vitis vinifera HOM05D003369 ORTHO05D004089 1.8e-37 159.8 175 61.1
Aqoxy3G00685 Aquilegia oxysepala HOM05D003369 ORTHO05D004089 2.4e-37 159.5 177 61.6
CiPaw.09G143000 Carya illinoinensis HOM05D003369 ORTHO05D004089 2.4e-37 159.5 174 62.6
PSO170G0385 Papaver somniferum HOM05D003369 ORTHO05D004089 2.4e-37 159.5 173 64.2
MD00G1126900 Malus domestica HOM05D003369 ORTHO05D004089 3.1e-37 159.1 179 60.3
MD13G1002600 Malus domestica HOM05D003369 ORTHO05D004089 3.1e-37 159.1 180 62.2
arahy.Tifrunner.gnm1.ann1.ABG2GV Arachis hypogaea HOM05D003369 ORTHO05D004089 4.1e-37 158.7 178 60.1
arahy.Tifrunner.gnm1.ann1.HI4H5F Arachis hypogaea HOM05D003369 ORTHO05D004089 4.1e-37 158.7 178 60.1
Potri.019G059200 Populus trichocarpa HOM05D003369 ORTHO05D004089 5.3e-37 158.3 180 60.6
Glyma.20G219600 Glycine max HOM05D003369 ORTHO05D004089 7.0e-37 157.9 178 59.6
CANSAT54G1399 Cannabis sativa HOM05D003369 ORTHO05D004089 1.2e-36 157.1 175 61.7
Nn5g26838 Nelumbo nucifera HOM05D003369 ORTHO05D004089 1.2e-36 157.1 176 60.8
HanXRQChr15g0493711 Helianthus annuus HOM05D003369 ORTHO05D004089 1.6e-36 156.8 179 65.4
COL.COLO4_19461 Corchorus olitorius HOM05D003369 ORTHO05D004089 2.0e-36 156.4 181 62.4
Cpa.g.sc19.47 Carica papaya HOM05D003369 ORTHO05D004089 3.5e-36 155.6 181 59.7
Manes.10G002000 Manihot esculenta HOM05D003369 ORTHO05D004089 3.5e-36 155.6 172 62.8
SalBow3G2694 Salvia bowleyana HOM05D003369 ORTHO05D004089 3.5e-36 155.6 179 56.4
Haze_05901 Corylus avellana HOM05D003369 ORTHO05D004089 4.5e-36 155.2 171 60.2
Atru.chr12.204 Acer truncatum HOM05D003369 ORTHO05D004089 7.7e-36 154.5 176 61.9
HanXRQChr14g0460671 Helianthus annuus HOM05D003369 ORTHO05D004089 1.0e-35 154.1 158 67.1
VMungo0720G1409 Vigna mungo HOM05D003369 ORTHO05D004089 1.0e-35 154.1 173 58.4
CiPaw.10G110000 Carya illinoinensis HOM05D003369 ORTHO05D004089 1.3e-35 153.7 176 61.4
Lalb_Chr02g0149391 Lupinus albus HOM05D003369 ORTHO05D004089 1.3e-35 153.7 151 64.9
Gohir.A05G277600 Gossypium hirsutum HOM05D003369 ORTHO05D004089 1.7e-35 153.3 182 57.7
Phvul.010G077634 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 2.2e-35 152.9 161 63.4
THA.LOC104824367 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 3.8e-35 152.1 180 58.3
ECA238G1180 Erigeron canadensis HOM05D003369 ORTHO05D004089 6.5e-35 151.4 157 63.7
Dinv34494 Davidia involucrata HOM05D003369 ORTHO05D004089 1.9e-34 149.8 123 65.9
Manes.07G142600 Manihot esculenta HOM05D003369 ORTHO05D004089 3.2e-34 149.1 163 63.8
Nitab4.5_0000171g0170 Nicotiana tabacum HOM05D003369 ORTHO05D004089 4.2e-34 148.7 195 53.3
FAN17G2799 Fragaria x ananassa HOM05D003369 ORTHO05D004089 5.5e-34 148.3 178 61.2
Gohir.D05G279200 Gossypium hirsutum HOM05D003369 ORTHO05D004089 5.5e-34 148.3 182 57.7
Gorai.009G292700 Gossypium raimondii HOM05D003369 ORTHO05D004089 5.5e-34 148.3 182 57.7
Nitab4.5_0000375g0250 Nicotiana tabacum HOM05D003369 ORTHO05D004089 9.4e-34 147.5 192 55.2
Nitab4.5_0011372g0040 Nicotiana tabacum HOM05D003369 ORTHO05D004089 9.4e-34 147.5 192 56.2
BcaB06g29170 Brassica carinata HOM05D003369 ORTHO05D004089 1.2e-33 147.1 163 61.3
Lalb_Chr06g0168441 Lupinus albus HOM05D003369 ORTHO05D004089 1.6e-33 146.7 146 63.7
A03p22890 Brassica napus HOM05D003369 ORTHO05D004089 1.0e-32 144.1 158 62.0
ClCG11G010900 Citrullus lanatus HOM05D003369 ORTHO05D004089 1.0e-32 144.1 173 58.4
EL10Ac3g06746 Beta vulgaris HOM05D003369 ORTHO05D004089 2.3e-32 142.9 162 59.9
Peaxi162Scf00739g00425 Petunia axillaris HOM05D003369 ORTHO05D004089 2.3e-32 142.9 210 50.0
AL4G38590 Arabidopsis lyrata HOM05D003369 ORTHO05D004089 3.0e-32 142.5 164 61.6
AT2G40730 Arabidopsis thaliana HOM05D003369 ORTHO05D004089 3.0e-32 142.5 164 61.6
FvH4_4g37220 Fragaria vesca HOM05D003369 ORTHO05D004089 4.0e-32 142.1 178 61.2
Sp4g23040 Schrenkiella parvula HOM05D003369 ORTHO05D004089 4.0e-32 142.1 163 59.5
BcaB01g03521 Brassica carinata HOM05D003369 ORTHO05D004089 5.2e-32 141.7 177 57.1
BraA03t11513Z Brassica rapa HOM05D003369 ORTHO05D004089 5.2e-32 141.7 164 59.8
PGR044G0140 Punica granatum HOM05D003369 ORTHO05D004089 5.2e-32 141.7 174 58.0
CAN.G203.55 Capsicum annuum HOM05D003369 ORTHO05D004089 1.2e-31 140.6 192 53.6
Sc05g0004490 Simmondsia chinensis HOM05D003369 ORTHO05D004089 4.4e-31 138.7 183 56.8
CsaV3_3G030590 Cucumis sativus L. HOM05D003369 ORTHO05D004089 5.7e-31 138.3 172 57.6
FAN07G2686 Fragaria x ananassa HOM05D003369 ORTHO05D004089 7.5e-31 137.9 179 57.0
BcaC01g05384 Brassica carinata HOM05D003369 ORTHO05D004089 1.3e-30 137.1 158 60.1
C03p27140 Brassica napus HOM05D003369 ORTHO05D004089 1.3e-30 137.1 158 60.1
Hund05383 Selenicereus undatus HOM05D003369 ORTHO05D004089 1.3e-30 137.1 167 58.7
THA.LOC104814068 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 3.7e-30 135.6 178 57.9
BolC3t15095H Brassica oleracea HOM05D003369 ORTHO05D004089 6.3e-30 134.8 164 57.9
TPR.G35277 Trifolium pratense HOM05D003369 ORTHO05D004089 6.3e-30 134.8 173 53.8
A04p31100 Brassica napus HOM05D003369 ORTHO05D004089 8.3e-30 134.4 163 58.9
BraA04t18565Z Brassica rapa HOM05D003369 ORTHO05D004089 8.3e-30 134.4 163 58.9
MELO3C022652.2 Cucumis melo HOM05D003369 ORTHO05D004089 1.1e-29 134.0 176 55.7
Psat0s4462g0240 Pisum sativum HOM05D001932 ORTHO05D004089 1.4e-29 133.7 124 56.5
PGSC0003DMG400016657 Solanum tuberosum HOM05D003369 ORTHO05D004089 1.4e-29 133.7 198 49.0
MBI15_g39391_MAGBIO Magnolia biondii HOM05D003369 ORTHO05D004089 1.8e-29 133.3 184 53.3
Aa31LG3G1410 Aethionema arabicum HOM05D003369 ORTHO05D004089 5.4e-29 131.7 163 62.0
CARHR135820 Cardamine hirsuta HOM05D003369 ORTHO05D004089 5.4e-29 131.7 163 58.3
Solyc06g048890.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 7.0e-29 131.3 194 50.0
ATR1127G027 Amborella trichopoda HOM05D003369 ORTHO05D004089 1.6e-28 130.2 162 58.6
BcaC02g07330 Brassica carinata HOM05D003369 ORTHO05D004089 2.0e-28 129.8 163 57.7
C04p68490 Brassica napus HOM05D003369 ORTHO05D004089 2.0e-28 129.8 163 57.7
Sopen06g015200 Solanum pennellii HOM05D003369 ORTHO05D004089 3.5e-28 129.0 198 43.9
BolC4t28349H Brassica oleracea HOM05D003369 ORTHO05D004089 4.5e-28 128.6 163 57.7
Medtr1g078370 Medicago truncatula HOM05D003369 ORTHO05D004089 5.9e-28 128.3 170 47.6
SGA_v2.0_scaffold327G48760 Striga asiatica HOM05D003369 ORTHO05D004089 5.9e-28 128.3 164 48.8
Oeu063993.2 Olea europaea HOM05D003369 ORTHO05D004089 1.0e-27 127.5 114 64.0
Lsat_1_v5_gn_2_126361 Lactuca sativa HOM05D003369 ORTHO05D004089 1.3e-27 127.1 181 54.7
Thhalv10016269m.g Eutrema salsugineum HOM05D003369 ORTHO05D004089 1.7e-27 126.7 163 55.8
Sabra19G0074300 Salix brachista HOM05D003369 ORTHO05D004089 1.7e-27 126.7 262 42.0
Carub.0004s2301 Capsella rubella HOM05D003369 ORTHO05D004089 2.3e-27 126.3 163 57.1
AUR62042224 Chenopodium quinoa HOM05D003369 ORTHO05D004089 3.8e-27 125.6 182 53.3
Nn2g10283 Nelumbo nucifera HOM05D003369 ORTHO05D004089 5.0e-27 125.2 164 56.7
AUR62037781 Chenopodium quinoa HOM05D003369 ORTHO05D004089 8.6e-27 124.4 182 52.7
Zm00001eb368920 Zea mays HOM05D003369 ORTHO05D004089 1.1e-26 124.0 187 52.4
Oeu018743.1 Olea europaea HOM05D003369 ORTHO05D004089 1.9e-26 123.2 183 54.1
Os01g0819900 Oryza sativa ssp. japonica HOM05D003369 ORTHO05D004089 3.3e-26 122.5 189 50.8
PGSC0003DMG400011657 Solanum tuberosum HOM05D003369 ORTHO05D004089 7.2e-26 121.3 193 49.2
CDE07G0902 Ceratophyllum demersum HOM05D003369 ORTHO05D004089 9.5e-26 120.9 172 50.6
Migut.F00574 Erythranthe guttata HOM05D003369 ORTHO05D004089 1.6e-25 120.2 184 51.6
Ah.13g075100 Amaranthus hybridus HOM05D003369 ORTHO05D004089 1.0e-24 117.5 175 52.6
Lsat_1_v5_gn_9_60180 Lactuca sativa HOM05D003369 ORTHO05D004089 1.8e-24 116.7 164 56.7
Zm00001eb149610 Zea mays HOM05D003369 ORTHO05D004089 1.8e-24 116.7 187 49.2
BcaC02g12730 Brassica carinata HOM05D003369 ORTHO05D004089 5.2e-24 115.2 150 55.3
Duzib106G0164 Durio zibethinus HOM05D003369 ORTHO05D004089 5.7e-23 111.7 155 56.8
Sopen05g030740 Solanum pennellii HOM05D003369 ORTHO05D004089 3.7e-22 109.0 173 52.0
MSTRG.27258 Avicennia marina HOM05D003369 ORTHO05D004089 4.9e-22 108.6 204 45.1
Solyc05g052200.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 2.4e-21 106.3 173 51.4
CDE06G0307 Ceratophyllum demersum HOM05D001225 ORTHO05D001252 3.5e-20 102.4 173 40.5
SEGI_10703 Sequoiadendron giganteum HOM05D003369 ORTHO05D004089 2.3e-19 99.8 204 44.1
HPP92_018085 Vanilla planifolia HOM05D003369 ORTHO05D004089 3.8e-19 99.0 194 49.5
unitig_0.g2517 Utricularia gibba HOM05D003369 ORTHO05D004089 7.3e-18 94.7 172 44.8
Lsat_1_v5_gn_8_20221 Lactuca sativa HOM05D003369 ORTHO05D004089 1.2e-17 94.0 97 58.8
MSTRG.8884 Avicennia marina HOM05D003369 ORTHO05D004089 2.8e-17 92.8 88 58.0
CSS0040829 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 2.8e-17 92.8 72 59.7
Lsat_1_v5_gn_8_162600 Lactuca sativa HOM05D003369 ORTHO05D004089 2.3e-16 89.7 96 56.2
Lsat_1_v5_gn_8_135680 Lactuca sativa HOM05D003369 ORTHO05D004089 4.0e-16 89.0 97 55.7
Sc05g0004500 Simmondsia chinensis HOM05D003369 ORTHO05D004089 1.4e-13 80.5 77 55.8
Pp3c3_22310 Physcomitrium patens HOM05D003369 ORTHO05D004089 1.3e-11 73.9 190 35.3
Lsat_1_v5_gn_4_53561 Lactuca sativa HOM05D003369 ORTHO05D004089 3.9e-11 72.4 106 48.1
QL93p0201_0001 Quercus lobata HOM05D003369 ORTHO05D020257 3.9e-11 72.4 87 65.5
CSS0000037 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D020257 1.5e-10 70.5 86 64.0
FAN12G0023 Fragaria x ananassa HOM05D003369 ORTHO05D020257 1.5e-10 70.5 93 67.7
Mapoly0025s0051 Marchantia polymorpha HOM05D003369 ORTHO05D004089 5.2e-08 62.0 200 34.0
unitig_88.g27820 Utricularia gibba HOM05D003369 ORTHO05D004089 6.8e-08 61.6 98 40.8
MELO3C026565.2 Cucumis melo HOM05D003369 ORTHO05D020257 1.2e-07 60.8 78 48.7
MELO3C027650.2 Cucumis melo HOM05D003369 ORTHO05D020257 4.9e-06 55.5 78 47.4


User provided reference genes

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