Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005857 Daucus carota HOM05D000123 ORTHO05D029207 1.4e-69 266.2 131 100.0
DCAR_002703 Daucus carota HOM05D000123 ORTHO05D000064 8.9e-45 183.7 130 70.8
Duzib211G0010 Durio zibethinus HOM05D000123 ORTHO05D000064 1.2e-28 130.2 125 55.2
Thecc.01G271900 Theobroma cacao HOM05D000123 ORTHO05D000064 2.4e-26 122.5 126 53.2
Duzib133G0832 Durio zibethinus HOM05D000123 ORTHO05D000064 5.1e-24 114.8 126 54.0
Duzib138G1461 Durio zibethinus HOM05D000123 ORTHO05D000064 8.7e-24 114.0 126 52.4
Oeu041707.1 Olea europaea HOM05D000123 ORTHO05D000064 3.7e-22 108.6 130 46.9
Cc01_g19020 Coffea canephora HOM05D000123 ORTHO05D000064 8.1e-22 107.5 127 54.3
CSS0028881 Camellia sinensis var. sinensis HOM05D000123 ORTHO05D000064 1.1e-21 107.1 116 54.3
CSS0037535 Camellia sinensis var. sinensis HOM05D000123 ORTHO05D000064 1.1e-21 107.1 116 54.3
FAN15G1982 Fragaria x ananassa HOM05D000123 ORTHO05D000064 1.4e-21 106.7 130 46.2
FAN27G3518 Fragaria x ananassa HOM05D000123 ORTHO05D000064 2.0e-20 102.8 130 45.4
Hma1.2p1_0760F.1_g214040 Hydrangea macrophylla HOM05D000123 ORTHO05D000064 2.6e-20 102.4 131 50.4
Lj1C55G1 Lonicera japonica HOM05D000123 ORTHO05D000064 3.4e-20 102.1 131 47.3
TAR636G2026 Trochodendron aralioides HOM05D000123 ORTHO05D000064 3.4e-20 102.1 132 46.2
Nitab4.5_0000459g0060 Nicotiana tabacum HOM05D000123 ORTHO05D000064 4.5e-20 101.7 130 48.5
Nitab4.5_0004441g0010 Nicotiana tabacum HOM05D000123 ORTHO05D000064 4.5e-20 101.7 130 48.5
FvH4_2g23000 Fragaria vesca HOM05D000123 ORTHO05D000064 7.6e-20 100.9 130 45.4
MBI04_g27912_MAGBIO Magnolia biondii HOM05D000123 ORTHO05D000064 7.6e-20 100.9 113 51.3
Nn1g02456 Nelumbo nucifera HOM05D000123 ORTHO05D000064 7.6e-20 100.9 133 45.1
FAN11G1147 Fragaria x ananassa HOM05D000631 ORTHO05D000064 1.0e-19 100.5 128 45.3
CiPaw.07G087000 Carya illinoinensis HOM05D000123 ORTHO05D000064 3.8e-19 98.6 126 45.2
FAN24G2530 Fragaria x ananassa HOM05D000123 ORTHO05D000064 3.8e-19 98.6 130 44.6
MD11G1278900 Malus domestica HOM05D000123 ORTHO05D000064 3.8e-19 98.6 126 46.0
Sabra05G0164200 Salix brachista HOM05D000123 ORTHO05D000064 6.5e-19 97.8 127 49.6
Hund09545 Selenicereus undatus HOM05D000123 ORTHO05D000064 6.5e-19 97.8 144 45.8
Dinv22504 Davidia involucrata HOM05D000123 ORTHO05D000064 1.1e-18 97.1 114 51.8
Dinv32886 Davidia involucrata HOM05D000123 ORTHO05D000064 2.5e-18 95.9 110 51.8
Gohir.D08G072600 Gossypium hirsutum HOM05D000123 ORTHO05D000064 2.5e-18 95.9 126 45.2
MSTRG.21527 Avicennia marina HOM05D000123 ORTHO05D000064 4.2e-18 95.1 119 50.4
Gorai.004G076900 Gossypium raimondii HOM05D000123 ORTHO05D000064 5.5e-18 94.7 126 45.2
AUR62011973 Chenopodium quinoa HOM05D000123 ORTHO05D000064 9.3e-18 94.0 143 46.9
Gohir.A08G064100 Gossypium hirsutum HOM05D000123 ORTHO05D000064 6.0e-17 91.3 126 45.2
Oeu014743.1 Olea europaea HOM05D000123 ORTHO05D000064 7.9e-17 90.9 87 54.0
Prupe.8G234900 Prunus persica HOM05D000123 ORTHO05D000064 7.9e-17 90.9 126 44.4
Glyma.03G157300 Glycine max HOM05D000123 ORTHO05D000064 2.3e-16 89.4 133 43.6
CAN.G433.1 Capsicum annuum HOM05D000123 ORTHO05D000064 3.0e-16 89.0 129 44.2
AUR62032284 Chenopodium quinoa HOM05D000123 ORTHO05D000064 3.9e-16 88.6 142 45.1
Phvul.001G154700 Phaseolus vulgaris HOM05D000123 ORTHO05D000064 6.7e-16 87.8 131 42.0
Potri.002G048200 Populus trichocarpa HOM05D000123 ORTHO05D000064 8.7e-16 87.4 111 48.6
Lalb_Chr01g0020001 Lupinus albus HOM05D000123 ORTHO05D029207 1.1e-15 87.0 105 46.7
Potri.005G214800 Populus trichocarpa HOM05D000123 ORTHO05D000064 1.9e-15 86.3 109 48.6
Ah.02g111300 Amaranthus hybridus HOM05D000179 ORTHO05D000064 7.4e-15 84.3 132 43.9
QL06p000949 Quercus lobata HOM05D000123 ORTHO05D000064 7.4e-15 84.3 134 37.3
QL93p0351_0008 Quercus lobata HOM05D000123 ORTHO05D000064 7.4e-15 84.3 134 37.3
GSVIVG01003118001 Vitis vinifera HOM05D000123 ORTHO05D000064 1.3e-14 83.6 132 41.7
Eucgr.K03325 Eucalyptus grandis HOM05D000123 ORTHO05D000064 1.6e-14 83.2 132 43.9
MD03G1258300 Malus domestica HOM05D000123 ORTHO05D000064 1.6e-14 83.2 126 42.1
COL.COLO4_09192 Corchorus olitorius HOM05D000123 ORTHO05D000064 2.8e-14 82.4 110 46.4
QL12p042236 Quercus lobata HOM05D000123 ORTHO05D000064 2.8e-14 82.4 114 47.4
Sabra02G0039400 Salix brachista HOM05D000123 ORTHO05D000064 2.8e-14 82.4 128 42.2
VMungo1383G1049 Vigna mungo HOM05D000123 ORTHO05D000064 3.7e-14 82.0 127 43.3
Lj2P1165T31 Lonicera japonica HOM05D000123 ORTHO05D000064 4.8e-14 81.6 107 48.6
Rhsim01G0272100 Rhododendron simsii HOM05D000179 ORTHO05D000064 8.2e-14 80.9 125 44.8
Manes.05G081700 Manihot esculenta HOM05D000123 ORTHO05D000064 1.1e-13 80.5 126 46.8
Gohir.D11G130700 Gossypium hirsutum HOM05D000123 ORTHO05D000064 1.4e-13 80.1 93 49.5
PGSC0003DMG401019343 Solanum tuberosum HOM05D000123 ORTHO05D000064 1.4e-13 80.1 120 47.5
PGSC0003DMG402019343 Solanum tuberosum HOM05D000123 ORTHO05D000064 1.4e-13 80.1 120 45.0
TAR365G0791 Trochodendron aralioides HOM05D000123 ORTHO05D000064 1.4e-13 80.1 124 39.5
FAN20G3081 Fragaria x ananassa HOM05D000123 ORTHO05D000064 1.8e-13 79.7 98 46.9
Gohir.A11G125400 Gossypium hirsutum HOM05D000123 ORTHO05D000064 2.4e-13 79.3 93 49.5
Manes.03G173200 Manihot esculenta HOM05D000123 ORTHO05D000064 3.1e-13 79.0 129 38.0
Lalb_Chr25g0290131 Lupinus albus HOM05D000123 ORTHO05D000064 4.1e-13 78.6 108 42.6
Haze_04643 Corylus avellana HOM05D000123 ORTHO05D000064 5.3e-13 78.2 123 41.5
Medtr7g095680 Medicago truncatula HOM05D000123 ORTHO05D000064 5.3e-13 78.2 91 47.3
MD16G1199800 Malus domestica HOM05D000123 ORTHO05D000064 6.9e-13 77.8 139 36.0
Gorai.007G139600 Gossypium raimondii HOM05D000123 ORTHO05D000064 9.0e-13 77.4 93 48.4
TWI12G0854 Tripterygium wilfordii HOM05D000123 ORTHO05D000064 9.0e-13 77.4 131 44.3
EL10Ac5g10494 Beta vulgaris HOM05D000123 ORTHO05D000064 1.2e-12 77.0 135 42.2
Peaxi162Scf00259g00710 Petunia axillaris HOM05D000123 ORTHO05D000064 1.2e-12 77.0 110 46.4
Manes.01G204200 Manihot esculenta HOM05D000123 ORTHO05D000064 1.5e-12 76.6 128 45.3
Nitab4.5_0001917g0020 Nicotiana tabacum HOM05D000123 ORTHO05D000064 3.4e-12 75.5 135 40.0
Phvul.007G174800 Phaseolus vulgaris HOM05D000123 ORTHO05D000064 3.4e-12 75.5 124 39.5
HanXRQChr01g0005611 Helianthus annuus HOM05D000123 ORTHO05D000064 5.9e-12 74.7 122 43.4
Sabra08G0120000 Salix brachista HOM05D000123 ORTHO05D000064 5.9e-12 74.7 129 35.7
Sopen09g027410 Solanum pennellii HOM05D000123 ORTHO05D000064 1.0e-11 73.9 120 41.7
CANSAT25G3291 Cannabis sativa HOM05D000123 ORTHO05D000064 1.3e-11 73.6 125 40.8
Glyma.19G159500 Glycine max HOM05D000123 ORTHO05D000064 1.3e-11 73.6 126 38.9
Ca_08630_v3 Cicer arietinum L. HOM05D000123 ORTHO05D000064 2.2e-11 72.8 130 38.5
Duzib151G0016 Durio zibethinus HOM05D000123 ORTHO05D000064 2.2e-11 72.8 134 35.8
Migut.D00358 Erythranthe guttata HOM05D000123 ORTHO05D000064 2.2e-11 72.8 106 46.2
MD13G1199700 Malus domestica HOM05D000123 ORTHO05D000064 2.2e-11 72.8 140 34.3
Potri.010G082000 Populus trichocarpa HOM05D000123 ORTHO05D000064 2.2e-11 72.8 132 36.4
Solyc09g065660.4 Solanum lycopersicum HOM05D000123 ORTHO05D000064 2.9e-11 72.4 121 41.3
FvH4_4g01180 Fragaria vesca HOM05D000123 ORTHO05D000064 3.8e-11 72.0 134 35.8
FAN12G2836 Fragaria x ananassa HOM05D000123 ORTHO05D000064 3.8e-11 72.0 134 35.8
ECA248G3247 Erigeron canadensis HOM05D000123 ORTHO05D000064 5.0e-11 71.6 115 47.0
Gohir.A12G002850 Gossypium hirsutum HOM05D000123 ORTHO05D029207 6.5e-11 71.2 113 40.7
QL06p000987 Quercus lobata HOM05D000123 ORTHO05D000064 6.5e-11 71.2 126 34.9
Duzib212G0452 Durio zibethinus HOM05D000123 ORTHO05D000064 8.4e-11 70.9 134 36.6
FAN17G2811 Fragaria x ananassa HOM05D000123 ORTHO05D000064 8.4e-11 70.9 134 38.1
SGA_v2.0_scaffold80G25922 Striga asiatica HOM05D000123 ORTHO05D000064 8.4e-11 70.9 132 38.6
FAN22G1145 Fragaria x ananassa HOM05D000123 ORTHO05D000064 1.1e-10 70.5 134 37.3
MBI11_g02085_MAGBIO Magnolia biondii HOM05D000123 ORTHO05D000064 1.1e-10 70.5 126 34.9
Cpa.g.sc44.122 Carica papaya HOM05D000123 ORTHO05D000064 1.4e-10 70.1 130 34.6
Sabra10G0061000 Salix brachista HOM05D000123 ORTHO05D000064 1.9e-10 69.7 128 35.2
Psat3g061600 Pisum sativum HOM05D000123 ORTHO05D000064 2.5e-10 69.3 105 38.1
THA.LOC104817566 Tarenaya hassleriana HOM05D000123 ORTHO05D000064 2.5e-10 69.3 128 39.8
VMungo0720G2335 Vigna mungo HOM05D000123 ORTHO05D000064 2.5e-10 69.3 128 39.1
SalBow4G1256 Salvia bowleyana HOM05D000123 ORTHO05D000064 3.2e-10 68.9 95 43.2
MELO3C015804.2 Cucumis melo HOM05D000123 ORTHO05D000064 4.2e-10 68.6 143 37.8
Prupe.1G021200 Prunus persica HOM05D000123 ORTHO05D000064 4.2e-10 68.6 133 33.8
Dinv44575 Davidia involucrata HOM05D000123 ORTHO05D000064 5.5e-10 68.2 132 36.4
PGR004G1786 Punica granatum HOM05D000123 ORTHO05D000064 5.5e-10 68.2 146 34.9
CsaV3_7G027860 Cucumis sativus L. HOM05D000123 ORTHO05D000064 9.3e-10 67.4 137 38.0
Glyma.10G029600 Glycine max HOM05D000123 ORTHO05D000064 1.2e-09 67.0 123 38.2
Manes.15G032900 Manihot esculenta HOM05D000123 ORTHO05D000064 1.2e-09 67.0 127 37.0
Gorai.008G002300 Gossypium raimondii HOM05D000123 ORTHO05D029207 2.1e-09 66.2 112 39.3
Thecc.04G238500 Theobroma cacao HOM05D000123 ORTHO05D000064 2.1e-09 66.2 136 33.8
Ciclev10006902m.g Citrus clementina HOM05D000123 ORTHO05D000064 2.7e-09 65.9 136 33.1
Peaxi162Scf00316g00518 Petunia axillaris HOM05D000123 ORTHO05D000064 2.7e-09 65.9 114 39.5
Ciclev10020718m.g Citrus clementina HOM05D000123 ORTHO05D000064 4.6e-09 65.1 125 36.8
Oeu031518.1 Olea europaea HOM05D000123 ORTHO05D000064 4.6e-09 65.1 93 41.9
RcHm_v2.0_Chr6g0290041 Rosa chinensis HOM05D000123 ORTHO05D000064 6.1e-09 64.7 70 50.0
Potri.008G157600 Populus trichocarpa HOM05D000123 ORTHO05D000064 7.9e-09 64.3 135 34.1
SGA_v2.0_scaffold138G35297 Striga asiatica HOM05D000123 ORTHO05D000064 1.0e-08 63.9 96 46.9
Cfa008450 Carpinus fangiana HOM05D000123 ORTHO05D000064 1.3e-08 63.5 133 35.3
AUR62038648 Chenopodium quinoa HOM05D000123 ORTHO05D000064 1.8e-08 63.2 137 33.6
CsaV3_2G013880 Cucumis sativus L. HOM05D000123 ORTHO05D000064 1.8e-08 63.2 122 40.2
Cc03_g04280 Coffea canephora HOM05D000123 ORTHO05D000064 3.0e-08 62.4 130 31.5
HanXRQChr04g0113221 Helianthus annuus HOM05D000123 ORTHO05D000064 3.0e-08 62.4 98 43.9
CSS0017445 Camellia sinensis var. sinensis HOM05D000123 ORTHO05D000064 3.9e-08 62.0 131 35.9
Lsat_1_v5_gn_9_7580 Lactuca sativa HOM05D000123 ORTHO05D000064 3.9e-08 62.0 102 41.2
Sed0007728 Sechium edule HOM05D000123 ORTHO05D000064 3.9e-08 62.0 99 39.4
ClCG07G000500 Citrullus lanatus HOM05D000123 ORTHO05D000064 6.7e-08 61.2 122 37.7
arahy.Tifrunner.gnm1.ann1.A9PRP0 Arachis hypogaea HOM05D000123 ORTHO05D000064 8.7e-08 60.8 107 39.3
Cpa.g.sc52.116 Carica papaya HOM05D000123 ORTHO05D000064 8.7e-08 60.8 130 37.7
RcHm_v2.0_Chr4g0387751 Rosa chinensis HOM05D000123 ORTHO05D000064 8.7e-08 60.8 138 34.8
Lsat_1_v5_gn_5_185701 Lactuca sativa HOM05D000123 ORTHO05D000064 1.1e-07 60.5 124 38.7
COL.COLO4_21564 Corchorus olitorius HOM05D000123 ORTHO05D000064 1.5e-07 60.1 140 36.4
TWI73G0126 Tripterygium wilfordii HOM05D000123 ORTHO05D000064 1.9e-07 59.7 131 35.1
vmacro14889 Vaccinium macrocarpon HOM05D000123 ORTHO05D000064 1.9e-07 59.7 63 52.4
Atru.chr5.1519 Acer truncatum HOM05D000123 ORTHO05D000064 2.5e-07 59.3 141 33.3
ECA236G1706 Erigeron canadensis HOM05D000123 ORTHO05D000064 3.3e-07 58.9 78 47.4
vmacro08370 Vaccinium macrocarpon HOM05D000123 ORTHO05D000064 3.3e-07 58.9 133 33.8
ClCG09G007390 Citrullus lanatus HOM05D000123 ORTHO05D000064 4.3e-07 58.5 133 38.3
TPR.G19115 Trifolium pratense HOM05D000123 ORTHO05D000064 4.3e-07 58.5 124 33.9
Aqoxy5G00401 Aquilegia oxysepala HOM05D000123 ORTHO05D000064 5.7e-07 58.2 131 38.9
Ca_09730_v3 Cicer arietinum L. HOM05D000123 ORTHO05D000064 2.2e-06 56.2 80 45.0
Lj5g0025348 Lotus japonicus HOM05D000123 ORTHO05D000064 2.2e-06 56.2 90 42.2
Gohir.D09G220800 Gossypium hirsutum HOM05D000123 ORTHO05D000064 2.8e-06 55.8 135 35.6
arahy.Tifrunner.gnm1.ann1.4L43B4 Arachis hypogaea HOM05D000123 ORTHO05D000064 4.8e-06 55.1 103 38.8
Sopen09g031520 Solanum pennellii HOM05D000123 ORTHO05D000064 4.8e-06 55.1 136 36.8
FAN08G3632 Fragaria x ananassa HOM05D000631 ORTHO05D000524 6.3e-06 54.7 75 41.3
Solyc09g082670.3 Solanum lycopersicum HOM05D000123 ORTHO05D000064 8.2e-06 54.3 136 36.0


User provided reference genes

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