Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005798 Daucus carota HOM05D005667 ORTHO05D007299 1.4e-231 805.8 383 100.0
Dinv33042 Davidia involucrata HOM05D005667 ORTHO05D007299 3.4e-169 598.6 389 72.8
Actinidia32226 Actinidia chinensis HOM05D005667 ORTHO05D007299 5.4e-167 591.3 389 73.5
HanXRQChr04g0118041 Helianthus annuus HOM05D005667 ORTHO05D007299 5.1e-165 584.7 382 69.4
Hma1.2p1_0209F.1_g088490 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 1.5e-164 583.2 390 72.3
QL12p027280 Quercus lobata HOM05D005667 ORTHO05D007299 1.5e-161 573.2 396 69.2
vmacro14998 Vaccinium macrocarpon HOM05D005667 ORTHO05D007299 7.6e-161 570.9 393 70.0
MD11G1306000 Malus domestica HOM05D005667 ORTHO05D007299 3.2e-159 565.5 388 68.6
Atru.chr5.1169 Acer truncatum HOM05D005667 ORTHO05D007299 5.4e-159 564.7 386 69.9
Nn4g25820 Nelumbo nucifera HOM05D005667 ORTHO05D007299 1.6e-158 563.1 386 68.9
SGA_v2.0_scaffold2G01401 Striga asiatica HOM05D005667 ORTHO05D007299 1.3e-157 560.1 386 69.4
Cfa005935 Carpinus fangiana HOM05D005667 ORTHO05D007299 1.8e-157 559.7 390 69.0
arahy.Tifrunner.gnm1.ann1.P0XQ2X Arachis hypogaea HOM05D005667 ORTHO05D007299 2.3e-157 559.3 393 67.2
MD03G1286100 Malus domestica HOM05D005667 ORTHO05D007299 2.3e-157 559.3 388 68.0
Hund18138 Selenicereus undatus HOM05D005667 ORTHO05D007299 3.9e-157 558.5 392 67.9
VMungo1383G3519 Vigna mungo HOM05D005667 ORTHO05D007299 1.9e-156 556.2 384 67.7
CANSAT25G0856 Cannabis sativa HOM05D005667 ORTHO05D007299 2.5e-156 555.8 388 67.5
arahy.Tifrunner.gnm1.ann1.AQSE8X Arachis hypogaea HOM05D005667 ORTHO05D007299 9.6e-156 553.9 393 66.9
Phvul.001G206300 Phaseolus vulgaris HOM05D005667 ORTHO05D007299 9.6e-156 553.9 384 67.4
Lsat_1_v5_gn_8_53441 Lactuca sativa HOM05D005667 ORTHO05D007299 1.6e-155 553.1 397 67.5
Lj1g0013419 Lotus japonicus HOM05D005667 ORTHO05D007299 1.6e-155 553.1 390 67.7
TAR365G0445 Trochodendron aralioides HOM05D005667 ORTHO05D007299 1.6e-155 553.1 389 67.9
TAR627G0762 Trochodendron aralioides HOM05D005667 ORTHO05D007299 3.7e-155 552.0 392 67.3
Ca_09151_v3 Cicer arietinum L. HOM05D005667 ORTHO05D007299 6.2e-155 551.2 392 66.1
Ah.08g213150 Amaranthus hybridus HOM05D005667 ORTHO05D007299 1.8e-154 549.7 396 66.9
Lalb_Chr04g0259821 Lupinus albus HOM05D005667 ORTHO05D007299 1.8e-154 549.7 385 68.1
Psat3g021960 Pisum sativum HOM05D005667 ORTHO05D007299 9.0e-154 547.4 393 65.9
Haze_04910 Corylus avellana HOM05D005667 ORTHO05D007299 2.6e-153 545.8 421 64.4
Nitab4.5_0002469g0040 Nicotiana tabacum HOM05D005667 ORTHO05D007299 2.6e-153 545.8 386 68.1
Glyma.19G210500 Glycine max HOM05D005667 ORTHO05D007299 5.8e-153 544.7 386 66.6
CiPaw.07G107100 Carya illinoinensis HOM05D005667 ORTHO05D007299 7.6e-153 544.3 390 66.2
TPR.G9636 Trifolium pratense HOM05D005667 ORTHO05D007299 1.3e-152 543.5 389 66.6
QL12p026655 Quercus lobata HOM05D005667 ORTHO05D007299 2.2e-152 542.7 396 66.9
Solyc09g075000.3 Solanum lycopersicum HOM05D005667 ORTHO05D007299 1.9e-151 539.7 385 67.8
Sc05g0004030 Simmondsia chinensis HOM05D005667 ORTHO05D007299 2.5e-151 539.3 393 65.1
Medtr7g108870 Medicago truncatula HOM05D005667 ORTHO05D007299 7.1e-151 537.7 385 65.5
Medtr8g058590 Medicago truncatula HOM05D005667 ORTHO05D007299 7.1e-151 537.7 385 65.5
MELO3C017966.2 Cucumis melo HOM05D005667 ORTHO05D007299 9.3e-151 537.3 393 64.4
Glyma.03G213700 Glycine max HOM05D005667 ORTHO05D007299 1.2e-150 537.0 386 66.3
Lalb_Chr18g0047071 Lupinus albus HOM05D005667 ORTHO05D007299 1.6e-150 536.6 395 65.8
Sopen09g029820 Solanum pennellii HOM05D005667 ORTHO05D007299 2.1e-150 536.2 385 67.5
Lj1C26T7 Lonicera japonica HOM05D005667 ORTHO05D007299 2.7e-150 535.8 319 80.6
PGSC0003DMG400011397 Solanum tuberosum HOM05D005667 ORTHO05D007299 7.9e-150 534.3 385 67.8
TWI23G0451 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 5.1e-149 531.6 384 66.7
CSS0019258 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 3.3e-148 528.9 389 67.1
CsaV3_4G000700 Cucumis sativus L. HOM05D005667 ORTHO05D007299 1.3e-147 526.9 393 63.1
Ciclev10020175m.g Citrus clementina HOM05D005667 ORTHO05D007299 3.7e-147 525.4 442 59.0
TWI59G1070 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 3.7e-147 525.4 388 66.0
MSTRG.21625 Avicennia marina HOM05D005667 ORTHO05D007299 1.4e-146 523.5 386 66.3
Cc01_g20730 Coffea canephora HOM05D005667 ORTHO05D007299 2.4e-146 522.7 444 59.7
FvH4_2g25530 Fragaria vesca HOM05D005667 ORTHO05D007299 3.1e-146 522.3 374 65.8
Duzib138G1280 Durio zibethinus HOM05D005667 ORTHO05D007299 1.5e-145 520.0 388 65.5
Sed0014922 Sechium edule HOM05D005667 ORTHO05D007299 1.5e-145 520.0 370 64.9
GSVIVG01027987001 Vitis vinifera HOM05D005667 ORTHO05D007299 1.5e-145 520.0 339 72.9
COL.COLO4_23365 Corchorus olitorius HOM05D005667 ORTHO05D007299 3.8e-144 515.4 390 65.1
Sabra02G0153700 Salix brachista HOM05D005667 ORTHO05D007299 1.1e-143 513.8 409 63.3
THA.LOC104817511 Tarenaya hassleriana HOM05D005667 ORTHO05D007299 2.5e-143 512.7 398 62.3
Eucgr.K03468 Eucalyptus grandis HOM05D005667 ORTHO05D007299 7.2e-143 511.1 378 64.3
Thecc.01G298400 Theobroma cacao HOM05D005667 ORTHO05D007299 7.2e-143 511.1 390 63.8
Migut.D00204 Erythranthe guttata HOM05D005667 ORTHO05D007299 3.5e-142 508.8 390 64.6
SalBow3G0511 Salvia bowleyana HOM05D005667 ORTHO05D007299 6.1e-142 508.1 371 66.0
Potri.002G205600 Populus trichocarpa HOM05D005667 ORTHO05D007299 1.8e-141 506.5 389 64.5
Aqoxy2G02973 Aquilegia oxysepala HOM05D005667 ORTHO05D007299 2.3e-141 506.1 379 63.3
Nitab4.5_0005515g0060 Nicotiana tabacum HOM05D005667 ORTHO05D007299 5.1e-141 505.0 386 64.5
AL4G47370 Arabidopsis lyrata HOM05D005667 ORTHO05D007299 1.9e-140 503.1 374 64.7
AT2G47790 Arabidopsis thaliana HOM05D005667 ORTHO05D007299 1.9e-140 503.1 384 63.5
Sp4g29720 Schrenkiella parvula HOM05D005667 ORTHO05D007299 4.3e-140 501.9 371 63.9
Peaxi162Scf00001g00492 Petunia axillaris HOM05D005667 ORTHO05D007299 3.7e-139 498.8 377 62.9
Prupe.8G259400 Prunus persica HOM05D005667 ORTHO05D007299 1.4e-138 496.9 342 67.5
PSO210G4429 Papaver somniferum HOM05D005667 ORTHO05D007299 1.7e-136 490.0 392 62.8
FAN20G0834 Fragaria x ananassa HOM05D005667 ORTHO05D007299 2.9e-136 489.2 379 62.0
Manes.01G217700 Manihot esculenta HOM05D005667 ORTHO05D007299 5.0e-136 488.4 385 62.1
ECA236G1571 Erigeron canadensis HOM05D005667 ORTHO05D007299 6.5e-136 488.0 337 68.8
Hma1.2p1_0209F.1_g088500 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 1.9e-135 486.5 428 58.4
Potri.014G130600 Populus trichocarpa HOM05D005667 ORTHO05D007299 1.9e-135 486.5 384 63.5
CDE08G0318 Ceratophyllum demersum HOM05D005667 ORTHO05D007299 4.2e-135 485.3 387 58.9
Carub.0004s3050 Capsella rubella HOM05D005667 ORTHO05D007299 7.2e-135 484.6 389 60.7
ATR0796G332 Amborella trichopoda HOM05D005667 ORTHO05D007299 1.6e-134 483.4 384 61.5
AUR62008656 Chenopodium quinoa HOM05D005667 ORTHO05D007299 1.6e-134 483.4 391 59.8
CARHR143160 Cardamine hirsuta HOM05D005667 ORTHO05D007299 1.0e-133 480.7 395 60.5
AUR62033112 Chenopodium quinoa HOM05D005667 ORTHO05D007299 1.8e-133 479.9 392 59.7
Thhalv10001494m.g Eutrema salsugineum HOM05D005667 ORTHO05D007299 3.9e-133 478.8 391 61.1
EL10Ac7g17451 Beta vulgaris HOM05D005667 ORTHO05D007299 3.3e-132 475.7 389 60.2
Rhsim01G0284200 Rhododendron simsii HOM05D005667 ORTHO05D007299 1.3e-131 473.8 389 61.2
PSO170G6061 Papaver somniferum HOM05D005667 ORTHO05D007299 1.7e-131 473.4 373 63.0
Actinidia24829 Actinidia chinensis HOM05D005667 ORTHO05D007299 8.2e-131 471.1 386 60.4
ClCG10G010830 Citrullus lanatus HOM05D005667 ORTHO05D007299 1.1e-130 470.7 393 58.3
Gohir.D12G135100 Gossypium hirsutum HOM05D005667 ORTHO05D007299 1.4e-130 470.3 389 59.6
C04p72980 Brassica napus HOM05D005667 ORTHO05D007299 3.8e-128 462.2 383 59.5
A04p35070 Brassica napus HOM05D005667 ORTHO05D007299 1.9e-127 459.9 384 59.4
Sabra14G0097200 Salix brachista HOM05D005667 ORTHO05D007299 1.9e-127 459.9 386 60.1
Aa31LG1G29130 Aethionema arabicum HOM05D005667 ORTHO05D007299 2.5e-127 459.5 374 59.4
Gohir.A12G131200 Gossypium hirsutum HOM05D005667 ORTHO05D007299 2.5e-127 459.5 389 58.4
HPP92_027132 Vanilla planifolia HOM05D005667 ORTHO05D007299 4.2e-127 458.8 370 58.6
BolC4t28779H Brassica oleracea HOM05D005667 ORTHO05D007299 5.5e-127 458.4 383 59.3
CSS0024566 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 5.5e-127 458.4 388 58.8
PGR044G1684 Punica granatum HOM05D005667 ORTHO05D007299 1.2e-126 457.2 390 59.2
CSS0050073 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 2.1e-126 456.4 388 58.5
BraA04t18943Z Brassica rapa HOM05D005667 ORTHO05D007299 3.6e-126 455.7 385 59.2
BcaB06g29498 Brassica carinata HOM05D005667 ORTHO05D007299 6.1e-126 454.9 408 56.9
SHI15190 Sapria himalayana HOM05D005667 ORTHO05D007299 1.5e-124 450.3 376 59.6
Gorai.008G146100 Gossypium raimondii HOM05D005667 ORTHO05D007299 3.3e-124 449.1 389 58.4
unitig_0.g1174 Utricularia gibba HOM05D005667 ORTHO05D007299 4.4e-124 448.7 419 57.0
BcaC02g06992 Brassica carinata HOM05D005667 ORTHO05D007299 7.0e-122 441.4 382 57.3
Sc05g0001380 Simmondsia chinensis HOM05D005667 ORTHO05D007299 4.2e-119 432.2 300 65.3
SEGI_23788 Sequoiadendron giganteum HOM05D005667 ORTHO05D007299 5.7e-116 421.8 391 54.0
Dinv19706 Davidia involucrata HOM05D005667 ORTHO05D007299 3.5e-105 386.0 266 71.8
Cpa.g.sc9.222 Carica papaya HOM05D005667 ORTHO05D007299 2.0e-97 360.1 269 65.8
Medtr8g058557 Medicago truncatula HOM05D005667 ORTHO05D007299 1.0e-93 347.8 233 70.8
BcaB06g29495 Brassica carinata HOM05D005667 ORTHO05D007299 1.9e-87 327.0 278 57.2
Mapoly0153s0027 Marchantia polymorpha HOM05D005667 ORTHO05D007299 2.9e-83 313.2 378 43.7
Pp3c11_14960 Physcomitrium patens HOM05D005667 ORTHO05D007299 1.9e-79 300.4 387 43.4
Pp3c2_26100 Physcomitrium patens HOM05D005667 ORTHO05D007299 2.5e-79 300.1 389 44.2
SMO329G0065 Selaginella moellendorffii HOM05D005667 ORTHO05D007299 4.7e-78 295.8 349 44.7
RcHm_v2.0_Chr6g0293741 Rosa chinensis HOM05D005667 ORTHO05D007299 1.2e-76 291.2 200 67.0
HPP92_021590 Vanilla planifolia HOM05D005667 ORTHO05D007299 4.9e-75 285.8 228 59.6
Pp3c11_15090 Physcomitrium patens HOM05D005667 ORTHO05D007299 5.6e-71 272.3 299 46.5
Nn3g21456 Nelumbo nucifera HOM05D005667 ORTHO05D007299 5.2e-61 239.2 316 44.6
Zm00001eb157470 Zea mays HOM05D005667 ORTHO05D007299 9.9e-60 235.0 195 57.4
Oeu011452.2 Olea europaea HOM05D005667 ORTHO05D007299 1.9e-58 230.7 167 68.9
AagrBONN_evm.TU.Sc2ySwM_344.2785 Anthoceros agrestis HOM05D005667 ORTHO05D007299 3.0e-56 223.4 254 45.7
Actinidia21054 Actinidia chinensis HOM05D005667 ORTHO05D007299 3.3e-55 219.9 152 64.5
Cre03.g178050 Chlamydomonas reinhardtii HOM05D005667 ORTHO05D007299 3.6e-46 189.9 361 34.6
Os12g0294100 Oryza sativa ssp. japonica HOM05D005667 ORTHO05D007299 3.6e-46 189.9 191 51.3
PRCOL_00003266 Prasinoderma coloniale HOM05D005667 ORTHO05D007299 4.9e-35 152.9 325 32.3
RcHm_v2.0_Chr6g0293751 Rosa chinensis HOM05D005667 ORTHO05D007299 7.9e-33 145.6 138 59.4
MCO09G319 Micromonas commoda HOM05D005667 ORTHO05D007299 6.7e-32 142.5 354 31.4
BcaC02g06993 Brassica carinata HOM05D005667 ORTHO05D007299 4.3e-31 139.8 119 61.3
Migut.D00125 Erythranthe guttata HOM05D005667 ORTHO05D007299 3.4e-28 130.2 174 44.8
CBR_g34279 Chara braunii HOM05D005667 ORTHO05D007299 5.1e-24 116.3 149 44.3
Migut.G00109 Erythranthe guttata HOM05D005667 ORTHO05D007299 8.2e-22 109.0 171 39.2
CBR_g31107 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-14 84.3 157 32.5
CBR_g31109 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-11 74.3 69 47.8
Actinidia13473 Actinidia chinensis HOM05D005667 ORTHO05D000474 2.7e-09 67.4 68 52.9
arahy.Tifrunner.gnm1.ann1.DS860L Arachis hypogaea HOM05D004669 ORTHO05D005767 5.2e-08 63.2 212 27.8
arahy.Tifrunner.gnm1.ann1.L4R828 Arachis hypogaea HOM05D004669 ORTHO05D005767 5.2e-08 63.2 212 27.8
Pp3c23_13260 Physcomitrium patens HOM05D005508 ORTHO05D006882 2.0e-07 61.2 120 34.2
CSS0009653 Camellia sinensis var. sinensis HOM05D004669 ORTHO05D005767 1.7e-06 58.2 230 27.0
Potri.015G143200 Populus trichocarpa HOM05D000684 ORTHO05D008211 2.2e-06 57.8 155 29.7


User provided reference genes

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