Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 0.0e+00 1786.2 929 100.0
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 7.7e-159 565.5 951 42.6
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 4.6e-103 380.2 797 37.6
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 7.2e-88 329.7 962 33.2
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 9.3e-88 329.3 964 33.0
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 6.1e-87 326.6 970 33.2
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 7.9e-87 326.2 897 33.8
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 4.3e-85 320.5 989 31.0
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 1.5e-82 312.0 900 33.9
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 3.4e-82 310.8 972 32.9
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 5.1e-78 297.0 973 30.0
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 1.0e-73 282.7 946 30.4
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 6.5e-73 280.0 959 30.2
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 5.5e-72 276.9 900 32.0
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 9.4e-72 276.2 975 30.7
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 1.2e-71 275.8 853 31.5
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 4.7e-71 273.9 915 31.0
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 2.3e-70 271.6 874 31.4
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 1.5e-69 268.9 910 30.1
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 5.7e-69 266.9 991 29.1
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 1.7e-68 265.4 904 30.9
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 2.2e-68 265.0 920 30.0
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 2.8e-68 264.6 878 30.5
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 4.8e-68 263.8 970 30.1
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 8.2e-68 263.1 886 30.4
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.1e-67 262.7 917 30.1
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 1.6e-66 258.8 968 29.3
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.0e-65 256.1 969 29.7
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 8.5e-65 253.1 965 30.1
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 3.2e-64 251.1 919 30.8
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 4.2e-64 250.8 969 29.9
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.2e-63 249.2 956 29.3
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.8e-62 245.4 883 29.9
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 3.0e-62 244.6 1034 29.1
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 6.7e-62 243.4 913 30.0
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 1.3e-60 239.2 972 27.6
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 8.2e-60 236.5 962 27.8
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 1.8e-59 235.3 784 30.7
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 3.5e-58 231.1 970 28.9
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 5.9e-58 230.3 957 27.9
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 1.7e-57 228.8 881 29.4
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 2.5e-56 224.9 959 28.7
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 3.2e-56 224.6 904 29.0
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 7.2e-56 223.4 967 27.7
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 1.2e-55 222.6 897 29.9
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 2.1e-55 221.9 899 29.0
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 3.0e-54 218.0 889 28.8
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 5.2e-54 217.2 901 27.5
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 6.8e-54 216.9 896 28.5
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 8.8e-54 216.5 957 28.7
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 2.0e-53 215.3 889 28.6
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 2.0e-53 215.3 881 28.6
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.6e-53 214.9 876 29.0
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 9.8e-53 213.0 937 27.3
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 1.7e-52 212.2 951 27.7
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 2.2e-52 211.8 888 28.4
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 6.3e-52 210.3 1013 28.8
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 8.3e-52 209.9 896 29.6
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 8.3e-52 209.9 914 27.1
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 8.3e-52 209.9 953 27.3
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 1.4e-51 209.1 958 27.5
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 1.2e-50 206.1 966 27.6
Lj1A7G43 Lonicera japonica HOM05D005434 ORTHO05D006412 1.7e-49 202.2 276 46.4
CSS0010810 Camellia sinensis var. sinensis HOM05D005434 ORTHO05D006412 3.8e-49 201.1 520 36.0
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 3.8e-49 201.1 887 29.7
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 6.5e-49 200.3 957 27.4
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 1.1e-48 199.5 906 26.5
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 7.2e-48 196.8 951 28.3
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 1.2e-47 196.1 965 27.2
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 1.6e-47 195.7 867 28.8
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 8.0e-47 193.4 978 27.2
Oeu052591.1 Olea europaea HOM05D005434 ORTHO05D006412 8.0e-47 193.4 826 29.8
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 8.9e-46 189.9 957 26.2
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 2.2e-44 185.3 954 26.8
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 2.8e-44 184.9 924 27.2
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 8.3e-44 183.3 963 25.9
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 1.1e-43 183.0 901 26.4
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 3.1e-43 181.4 986 26.0
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 3.8e-41 174.5 881 26.7
Dinv33176 Davidia involucrata HOM05D005434 ORTHO05D006412 5.0e-41 174.1 318 39.6
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 8.6e-41 173.3 958 25.7
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 8.6e-41 173.3 947 26.3
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 1.1e-40 172.9 887 27.3
Lj1A7T44 Lonicera japonica HOM05D005434 ORTHO05D006412 4.3e-40 171.0 512 34.8
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 4.3e-40 171.0 899 26.8
GSVIVG01028240001 Vitis vinifera HOM05D005434 ORTHO05D006412 1.6e-39 169.1 357 40.6
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 3.6e-39 167.9 890 26.2
Lalb_Chr02g0147201 Lupinus albus HOM05D005434 ORTHO05D006412 1.4e-38 166.0 186 47.3
Cpa.g.sc57.27 Carica papaya HOM05D005434 ORTHO05D006412 6.8e-38 163.7 814 26.5
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 1.5e-37 162.5 890 26.5
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 1.7e-36 159.1 869 26.1
Ciclev10019510m.g Citrus clementina HOM05D005434 ORTHO05D006412 3.7e-36 157.9 569 31.1
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 6.4e-36 157.1 788 26.3
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 1.2e-34 152.9 857 26.1
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 1.6e-34 152.5 966 26.4
TWI23G0760 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 2.0e-34 152.1 693 30.3
GSVIVG01028239001 Vitis vinifera HOM05D005434 ORTHO05D006412 2.3e-33 148.7 134 56.7
CiPaw.07G126300 Carya illinoinensis HOM05D005434 ORTHO05D006412 3.0e-33 148.3 464 33.6
SGA_v2.0_scaffold417G51248 Striga asiatica HOM05D005434 ORTHO05D006412 4.3e-32 144.4 962 26.3
HPP92_011320 Vanilla planifolia HOM05D005434 ORTHO05D006412 6.2e-31 140.6 889 25.6
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 2.0e-29 135.6 880 25.6
Dinv33178 Davidia involucrata HOM05D005434 ORTHO05D006412 4.1e-27 127.9 107 62.6
Sc17g0000050 Simmondsia chinensis HOM05D005434 ORTHO05D006412 4.1e-27 127.9 149 48.3
arahy.Tifrunner.gnm1.ann1.9BA1LG Arachis hypogaea HOM05D005434 ORTHO05D006412 1.6e-26 125.9 464 29.3
Os10g0405500 Oryza sativa ssp. japonica HOM05D005434 ORTHO05D006412 3.9e-25 121.3 911 23.9
CDE02G0039 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 5.0e-25 120.9 159 40.9
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 5.0e-25 120.9 880 26.8
Ciclev10023478m.g Citrus clementina HOM05D005434 ORTHO05D006412 9.9e-21 106.7 99 54.5
CiPaw.07G126400 Carya illinoinensis HOM05D005434 ORTHO05D006412 1.3e-20 106.3 117 43.6
unitig_62.g23901 Utricularia gibba HOM05D005434 ORTHO05D006412 6.4e-20 104.0 179 36.3
Zm00001eb233800 Zea mays HOM05D005434 ORTHO05D006412 8.3e-20 103.6 264 29.9
Lalb_Chr02g0147191 Lupinus albus HOM05D005434 ORTHO05D006412 7.8e-18 97.1 530 26.8
BcaB07g33880 Brassica carinata HOM05D005434 ORTHO05D006412 1.3e-17 96.3 357 26.6
Actinidia25873 Actinidia chinensis HOM05D005434 ORTHO05D006412 3.0e-17 95.1 740 26.9
Dinv33187 Davidia involucrata HOM05D005434 ORTHO05D006412 4.4e-13 81.3 290 30.3
PGSC0003DMG400023095 Solanum tuberosum HOM05D005434 ORTHO05D007977 1.3e-12 79.7 79 50.6
AagrBONN_evm.TU.Sc2ySwM_344.3613 Anthoceros agrestis HOM05D022252 ORTHO05D006412 7.8e-10 70.5 150 29.3
SEGI_30180 Sequoiadendron giganteum HOM05D005434 ORTHO05D006412 2.3e-09 68.9 170 28.2
Actinidia21335 Actinidia chinensis HOM05D005434 ORTHO05D006412 8.7e-09 67.0 120 38.3
BcaC01g05050 Brassica carinata HOM05D005434 ORTHO05D006412 2.5e-08 65.5 105 37.1
Dinv33188 Davidia involucrata HOM05D005434 ORTHO05D006412 3.3e-08 65.1 137 39.4
CDE08G1326 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 2.8e-07 62.0 73 42.5
Sc17g0000060 Simmondsia chinensis HOM05D005434 ORTHO05D006412 6.2e-07 60.8 324 27.5
A03p25810 Brassica napus HOM05D005434 ORTHO05D006412 1.4e-06 59.7 190 30.0
BraA03t11795Z Brassica rapa HOM05D005434 ORTHO05D006412 1.4e-06 59.7 190 30.0
BolC3t15425H Brassica oleracea HOM05D005434 ORTHO05D006412 2.4e-06 58.9 130 30.8
Dinv12077 Davidia involucrata HOM05D005434 ORTHO05D006412 3.1e-06 58.5 66 54.5
C03p30750 Brassica napus HOM05D005434 ORTHO05D011138 4.0e-06 58.2 129 30.2


User provided reference genes

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