Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005492 Daucus carota HOM05D003468 ORTHO05D002806 2.7e-132 475.3 238 100.0
DCAR_017858 Daucus carota HOM05D003468 ORTHO05D002806 9.7e-98 360.5 244 75.8
DCAR_026483 Daucus carota HOM05D003468 ORTHO05D002806 2.4e-48 196.4 250 46.0
Nitab4.5_0002091g0050 Nicotiana tabacum HOM05D003468 ORTHO05D002806 3.6e-36 156.0 260 38.5
Actinidia34492 Actinidia chinensis HOM05D003468 ORTHO05D002806 1.4e-35 154.1 273 38.1
Nitab4.5_0002759g0060 Nicotiana tabacum HOM05D003468 ORTHO05D002806 1.2e-34 151.0 209 41.6
Dinv28729 Davidia involucrata HOM05D003468 ORTHO05D002806 2.0e-34 150.2 212 42.0
SGA_v2.0_scaffold120G32985 Striga asiatica HOM05D003468 ORTHO05D002806 8.4e-33 144.8 216 41.2
PGSC0003DMG400030385 Solanum tuberosum HOM05D003468 ORTHO05D002806 1.1e-32 144.4 250 37.6
Rhsim01G0242800 Rhododendron simsii HOM05D003468 ORTHO05D002806 1.9e-32 143.7 266 38.0
GSVIVG01024564001 Vitis vinifera HOM05D003468 ORTHO05D002806 3.2e-32 142.9 201 43.3
vmacro10619 Vaccinium macrocarpon HOM05D003468 ORTHO05D002806 5.4e-32 142.1 268 38.1
Lj2A1101T50 Lonicera japonica HOM05D003468 ORTHO05D002806 9.2e-32 141.4 272 36.4
CSS0029508 Camellia sinensis var. sinensis HOM05D003468 ORTHO05D002806 1.6e-31 140.6 276 37.0
Nitab4.5_0002620g0010 Nicotiana tabacum HOM05D003468 ORTHO05D002806 3.5e-31 139.4 250 36.0
Solyc06g082510.3 Solanum lycopersicum HOM05D003468 ORTHO05D002806 3.5e-31 139.4 253 36.4
Nitab4.5_0000002g0180 Nicotiana tabacum HOM05D003468 ORTHO05D002806 1.3e-30 137.5 250 36.4
CAN.G874.78 Capsicum annuum HOM05D003468 ORTHO05D002806 3.0e-30 136.3 210 39.5
Peaxi162Scf00390g00336 Petunia axillaris HOM05D003468 ORTHO05D002806 3.0e-30 136.3 245 37.1
Sopen06g033890 Solanum pennellii HOM05D003468 ORTHO05D002806 6.6e-30 135.2 253 35.6
Cc01_g15290 Coffea canephora HOM05D003468 ORTHO05D002806 2.5e-29 133.3 272 37.1
Peaxi162Scf00362g01055 Petunia axillaris HOM05D003468 ORTHO05D002806 2.5e-29 133.3 259 36.7
MSTRG.17916 Avicennia marina HOM05D003468 ORTHO05D002806 5.6e-29 132.1 225 37.3
SalBow2G1693 Salvia bowleyana HOM05D003468 ORTHO05D002806 5.6e-29 132.1 274 31.8
Lsat_1_v5_gn_8_109320 Lactuca sativa HOM05D003468 ORTHO05D002806 1.6e-28 130.6 246 39.8
Peaxi162Scf01078g00514 Petunia axillaris HOM05D003468 ORTHO05D002806 2.8e-28 129.8 239 35.1
MSTRG.12708 Avicennia marina HOM05D003468 ORTHO05D002806 3.6e-28 129.4 274 34.3
HanXRQChr16g0522621 Helianthus annuus HOM05D003468 ORTHO05D002806 1.8e-27 127.1 230 38.3
Hma1.2p1_0170F.1_g075010 Hydrangea macrophylla HOM05D003468 ORTHO05D002806 4.0e-27 125.9 274 34.7
Sc16g0010510 Simmondsia chinensis HOM05D003468 ORTHO05D002806 1.5e-26 124.0 192 42.2
Ah.04g159140 Amaranthus hybridus HOM05D003468 ORTHO05D002806 2.6e-26 123.2 247 36.8
QL01p024883 Quercus lobata HOM05D003468 ORTHO05D002806 3.4e-26 122.9 198 39.4
Sc09g0001380 Simmondsia chinensis HOM05D003468 ORTHO05D002806 4.4e-26 122.5 192 40.6
Oeu064681.2 Olea europaea HOM05D003468 ORTHO05D002806 9.9e-26 121.3 266 32.3
AUR62000285 Chenopodium quinoa HOM05D003468 ORTHO05D002806 1.3e-25 120.9 240 38.3
TAR633G1116 Trochodendron aralioides HOM05D003468 ORTHO05D002806 2.2e-25 120.2 196 39.3
Migut.M01993 Erythranthe guttata HOM05D003468 ORTHO05D002806 2.9e-25 119.8 224 33.9
AUR62006633 Chenopodium quinoa HOM05D003468 ORTHO05D002806 6.4e-25 118.6 216 40.3
Lsat_1_v5_gn_9_13861 Lactuca sativa HOM05D003468 ORTHO05D002806 6.4e-25 118.6 205 39.0
EL10Ac4g10009 Beta vulgaris HOM05D003468 ORTHO05D002806 8.4e-25 118.2 206 38.3
Ah.06g195340 Amaranthus hybridus HOM05D003468 ORTHO05D002806 1.1e-24 117.9 192 40.1
Lj6g0018146 Lotus japonicus HOM05D003468 ORTHO05D002806 1.9e-24 117.1 196 38.3
VMungo0540G0681 Vigna mungo HOM05D003468 ORTHO05D002806 2.4e-24 116.7 192 40.6
EL10Ac1g01349 Beta vulgaris HOM05D003468 ORTHO05D002806 5.4e-24 115.5 206 37.9
Hund21917 Selenicereus undatus HOM05D003468 ORTHO05D002806 7.1e-24 115.2 193 42.0
ClCG02G019040 Citrullus lanatus HOM05D003468 ORTHO05D002806 1.2e-23 114.4 247 34.0
Sed0021873 Sechium edule HOM05D003468 ORTHO05D002806 4.6e-23 112.5 193 38.3
Nn3g19626 Nelumbo nucifera HOM05D003468 ORTHO05D002806 6.0e-23 112.1 196 37.2
MELO3C026878.2 Cucumis melo HOM05D003468 ORTHO05D002806 1.7e-22 110.5 227 34.4
arahy.Tifrunner.gnm1.ann1.596HBI Arachis hypogaea HOM05D003468 ORTHO05D002806 2.3e-22 110.2 238 34.9
Nn2g10321 Nelumbo nucifera HOM05D003468 ORTHO05D002806 2.3e-22 110.2 196 36.7
Lalb_Chr18g0054251 Lupinus albus HOM05D003468 ORTHO05D002806 6.6e-22 108.6 193 36.8
arahy.Tifrunner.gnm1.ann1.UJZR4Z Arachis hypogaea HOM05D003468 ORTHO05D002806 8.7e-22 108.2 201 37.8
ECA247G2629 Erigeron canadensis HOM05D003468 ORTHO05D002806 1.1e-21 107.8 227 34.8
arahy.Tifrunner.gnm1.ann1.NCBN9K Arachis hypogaea HOM05D003468 ORTHO05D002806 1.9e-21 107.1 201 37.3
CsaV3_6G013110 Cucumis sativus L. HOM05D003468 ORTHO05D002806 1.9e-21 107.1 227 34.4
Cfa021527 Carpinus fangiana HOM05D003468 ORTHO05D002806 5.6e-21 105.5 200 36.5
Oeu058241.1 Olea europaea HOM05D003468 ORTHO05D002806 9.6e-21 104.8 223 33.2
arahy.Tifrunner.gnm1.ann1.DRQC3V Arachis hypogaea HOM05D003468 ORTHO05D002806 1.3e-20 104.4 194 37.6
Lalb_Chr15g0085871 Lupinus albus HOM05D003468 ORTHO05D002806 1.3e-20 104.4 192 37.0
Potri.013G154500 Populus trichocarpa HOM05D003468 ORTHO05D002806 4.8e-20 102.4 207 33.8
Sabra13G0124400 Salix brachista HOM05D003468 ORTHO05D002806 4.8e-20 102.4 207 32.4
Phvul.006G078200 Phaseolus vulgaris HOM05D003468 ORTHO05D002806 1.4e-19 100.9 192 37.5
Haze_24464 Corylus avellana HOM05D003468 ORTHO05D002806 3.1e-19 99.8 198 34.8
TWI79G0734 Tripterygium wilfordii HOM05D003468 ORTHO05D002806 3.1e-19 99.8 197 35.0
PSO541G3532 Papaver somniferum HOM05D003468 ORTHO05D002806 5.3e-19 99.0 196 32.7
Ca_15053_v3 Cicer arietinum L. HOM05D003468 ORTHO05D002806 6.9e-19 98.6 206 35.4
CDE07G0878 Ceratophyllum demersum HOM05D003468 ORTHO05D002806 9.0e-19 98.2 222 32.9
Psat5g148920 Pisum sativum HOM05D003468 ORTHO05D002806 9.0e-19 98.2 193 34.7
QL02p099821 Quercus lobata HOM05D003468 ORTHO05D002806 1.5e-18 97.4 179 39.7
Glyma.18G052700 Glycine max HOM05D003468 ORTHO05D002806 2.0e-18 97.1 218 33.0
CiPaw.14G050900 Carya illinoinensis HOM05D003468 ORTHO05D002806 3.4e-18 96.3 191 33.5
Eucgr.B00490 Eucalyptus grandis HOM05D003468 ORTHO05D002806 5.8e-18 95.5 211 36.0
Sed0014984 Sechium edule HOM05D003468 ORTHO05D002806 5.8e-18 95.5 213 34.7
RcHm_v2.0_Chr5g0073101 Rosa chinensis HOM05D003468 ORTHO05D002806 7.6e-18 95.1 189 34.4
RcHm_v2.0_Chr5g0000441 Rosa chinensis HOM05D003468 ORTHO05D002806 9.9e-18 94.7 189 37.0
SalBow4G1032 Salvia bowleyana HOM05D003468 ORTHO05D002806 9.9e-18 94.7 223 30.5
QL02p029550 Quercus lobata HOM05D003468 ORTHO05D002806 2.9e-17 93.2 190 37.9
QL06p000163 Quercus lobata HOM05D003468 ORTHO05D002806 2.9e-17 93.2 190 37.9
CANSAT54G1733 Cannabis sativa HOM05D003468 ORTHO05D002806 3.8e-17 92.8 220 34.1
Migut.M02021 Erythranthe guttata HOM05D003468 ORTHO05D002806 3.8e-17 92.8 191 35.6
MD11G1054300 Malus domestica HOM05D003468 ORTHO05D002806 3.8e-17 92.8 187 35.3
SGA_v2.0_scaffold77G25360 Striga asiatica HOM05D003468 ORTHO05D002806 1.1e-16 91.3 175 37.7
PSO675G8835 Papaver somniferum HOM05D003468 ORTHO05D002806 1.4e-16 90.9 196 32.1
Eucgr.B00647 Eucalyptus grandis HOM05D003468 ORTHO05D002806 1.9e-16 90.5 223 33.6
Glyma.11G186600 Glycine max HOM05D003468 ORTHO05D002806 2.4e-16 90.1 202 34.2
FAN21G2193 Fragaria x ananassa HOM05D003468 ORTHO05D002806 4.2e-16 89.4 189 34.9
MD03G1052200 Malus domestica HOM05D003468 ORTHO05D002806 7.1e-16 88.6 187 33.7
arahy.Tifrunner.gnm1.ann1.C9TTE9 Arachis hypogaea HOM05D003468 ORTHO05D002806 1.2e-15 87.8 194 32.0
arahy.Tifrunner.gnm1.ann1.ZR769L Arachis hypogaea HOM05D003468 ORTHO05D002806 1.2e-15 87.8 194 32.0
Cpa.g.sc85.113 Carica papaya HOM05D003468 ORTHO05D002806 1.2e-15 87.8 228 30.7
FvH4_3g40451 Fragaria vesca HOM05D003468 ORTHO05D002806 1.6e-15 87.4 198 33.3
FvH4_5g00450 Fragaria vesca HOM05D003468 ORTHO05D002806 1.6e-15 87.4 189 35.4
FAN18G2440 Fragaria x ananassa HOM05D003468 ORTHO05D002806 1.6e-15 87.4 189 35.4
FAN11G0916 Fragaria x ananassa HOM05D003468 ORTHO05D002806 2.1e-15 87.0 198 33.3
Manes.10G065600 Manihot esculenta HOM05D003468 ORTHO05D002806 2.1e-15 87.0 204 33.3
SHI19247 Sapria himalayana HOM05D003468 ORTHO05D002806 2.1e-15 87.0 182 31.9
Psat5g003000 Pisum sativum HOM05D003468 ORTHO05D002806 2.7e-15 86.7 195 35.9
EL10As3g23307 Beta vulgaris HOM05D003468 ORTHO05D002806 3.5e-15 86.3 118 40.7
MBI16_g27567_MAGBIO Magnolia biondii HOM05D003468 ORTHO05D002806 3.5e-15 86.3 193 35.2
FAN16G1667 Fragaria x ananassa HOM05D003468 ORTHO05D002806 4.6e-15 85.9 189 33.9
Aqoxy4G02393 Aquilegia oxysepala HOM05D003468 ORTHO05D002806 1.0e-14 84.7 195 31.8
Phvul.009G025400 Phaseolus vulgaris HOM05D003468 ORTHO05D002806 1.3e-14 84.3 200 31.5
Glyma.04G148800 Glycine max HOM05D003468 ORTHO05D002806 1.8e-14 84.0 222 32.0
Medtr3g467090 Medicago truncatula HOM05D003468 ORTHO05D002806 1.8e-14 84.0 196 32.1
CANSAT25G2600 Cannabis sativa HOM05D003468 ORTHO05D002806 2.3e-14 83.6 236 31.8
Prupe.6G041700 Prunus persica HOM05D003468 ORTHO05D002806 5.1e-14 82.4 187 32.6
RcHm_v2.0_Chr7g0218431 Rosa chinensis HOM05D003468 ORTHO05D002806 6.7e-14 82.0 204 33.8
PGR129G0007 Punica granatum HOM05D003468 ORTHO05D002806 8.7e-14 81.6 196 33.2
TPR.G28801 Trifolium pratense HOM05D003468 ORTHO05D002806 8.7e-14 81.6 201 31.8
Thecc.01G027400 Theobroma cacao HOM05D003468 ORTHO05D002806 1.5e-13 80.9 194 29.9
COL.COLO4_33672 Corchorus olitorius HOM05D003468 ORTHO05D002806 1.9e-13 80.5 188 30.9
FAN04G1909 Fragaria x ananassa HOM05D003468 ORTHO05D002806 1.9e-13 80.5 219 31.5
HPP92_009505 Vanilla planifolia HOM05D003468 ORTHO05D002806 2.5e-13 80.1 195 33.8
Thecc.01G157300 Theobroma cacao HOM05D003468 ORTHO05D002806 3.3e-13 79.7 201 28.4
TPR.G10431 Trifolium pratense HOM05D003468 ORTHO05D002806 4.3e-13 79.3 193 31.6
Aqoxy6G01245 Aquilegia oxysepala HOM05D003468 ORTHO05D002806 5.6e-13 79.0 190 31.6
FvH4_5g27240 Fragaria vesca HOM05D003468 ORTHO05D002806 5.6e-13 79.0 186 34.4
FAN18G3325 Fragaria x ananassa HOM05D003468 ORTHO05D002806 7.4e-13 78.6 186 34.4
HPP92_005948 Vanilla planifolia HOM05D003468 ORTHO05D002806 9.6e-13 78.2 198 32.3
VMungo1309G2250 Vigna mungo HOM05D003468 ORTHO05D002806 1.6e-12 77.4 198 30.8
BraA05t22997Z Brassica rapa HOM05D009360 ORTHO05D002806 2.8e-12 76.6 233 30.0
RcHm_v2.0_Chr7g0221541 Rosa chinensis HOM05D003468 ORTHO05D002806 2.8e-12 76.6 206 34.5
unitig_0.g430 Utricularia gibba HOM05D003468 ORTHO05D002806 2.8e-12 76.6 203 30.0
FAN13G0004 Fragaria x ananassa HOM05D003468 ORTHO05D002806 4.8e-12 75.9 186 34.4
FAN08G2580 Fragaria x ananassa HOM05D003468 ORTHO05D002806 8.1e-12 75.1 245 29.0
A05p42550 Brassica napus HOM05D009360 ORTHO05D002806 1.4e-11 74.3 233 30.0
FAN05G3624 Fragaria x ananassa HOM05D003468 ORTHO05D002806 2.4e-11 73.6 156 34.6
COL.COLO4_33674 Corchorus olitorius HOM05D003468 ORTHO05D002806 6.9e-11 72.0 189 30.2
AT5G58340 Arabidopsis thaliana HOM05D009360 ORTHO05D002806 1.2e-10 71.2 191 28.8
C05p62230 Brassica napus HOM05D009360 ORTHO05D002806 3.4e-10 69.7 244 28.3
BolC5t34879H Brassica oleracea HOM05D009360 ORTHO05D002806 3.4e-10 69.7 244 28.3
DCAR_024874 Daucus carota HOM05D003468 ORTHO05D002806 3.4e-10 69.7 33 100.0
BcaB08g36171 Brassica carinata HOM05D009360 ORTHO05D002806 5.8e-10 68.9 195 30.3
Thecc.01G157400 Theobroma cacao HOM05D003468 ORTHO05D002806 7.6e-10 68.6 189 28.6
Thecc.06G237700 Theobroma cacao HOM05D003468 ORTHO05D002806 1.3e-09 67.8 156 32.7
Carub.0001s1549 Capsella rubella HOM05D009360 ORTHO05D002806 2.2e-09 67.0 157 30.6
Carub.0008s1888 Capsella rubella HOM05D009360 ORTHO05D002806 2.9e-09 66.6 242 26.0
Lj1A121T44 Lonicera japonica HOM05D003468 ORTHO05D002806 2.9e-09 66.6 126 39.7
Aa31LG1G28610 Aethionema arabicum HOM05D009360 ORTHO05D002806 3.8e-09 66.2 191 29.3
Gorai.011G008700 Gossypium raimondii HOM05D003468 ORTHO05D002806 3.8e-09 66.2 154 32.5
CARHR016220 Cardamine hirsuta HOM05D009360 ORTHO05D002806 8.4e-09 65.1 190 28.9
THA.LOC104810722 Tarenaya hassleriana HOM05D009360 ORTHO05D002806 1.4e-08 64.3 235 26.8
Gohir.D10G008000 Gossypium hirsutum HOM05D003468 ORTHO05D002806 1.9e-08 63.9 154 31.2
Duzib192G0804 Durio zibethinus HOM05D003468 ORTHO05D002806 2.5e-08 63.5 126 31.7
COL.COLO4_13781 Corchorus olitorius HOM05D003468 ORTHO05D002806 5.5e-08 62.4 169 31.4
Thhalv10022421m.g Eutrema salsugineum HOM05D009360 ORTHO05D002806 5.5e-08 62.4 188 26.6
Gohir.A10G008200 Gossypium hirsutum HOM05D003468 ORTHO05D002806 7.1e-08 62.0 154 31.2
Aa31sc53G40 Aethionema arabicum HOM05D009360 ORTHO05D002806 9.3e-08 61.6 193 28.5
ATR0739G097 Amborella trichopoda HOM05D003468 ORTHO05D002806 9.3e-08 61.6 193 28.0
VMungo1309G0821 Vigna mungo HOM05D003468 ORTHO05D002806 9.3e-08 61.6 207 28.5
Gohir.D09G085500 Gossypium hirsutum HOM05D003468 ORTHO05D002806 3.5e-07 59.7 190 26.8
SalBow5G5747 Salvia bowleyana HOM05D003468 ORTHO05D002806 6.0e-07 58.9 76 39.5
Gorai.006G101500 Gossypium raimondii HOM05D003468 ORTHO05D002806 7.9e-07 58.5 190 26.8
Gohir.A09G085500 Gossypium hirsutum HOM05D003468 ORTHO05D002806 1.3e-06 57.8 190 26.3
Dinv12277 Davidia involucrata HOM05D003468 ORTHO05D002806 5.1e-06 55.8 142 31.7


User provided reference genes

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