Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005483 Daucus carota HOM05D020440 ORTHO05D006349 0.0e+00 1136.3 570 100.0
DCAR_001019 Daucus carota HOM05D020440 ORTHO05D006349 1.2e-175 620.5 379 85.8
DCAR_028606 Daucus carota HOM05D020440 ORTHO05D006349 8.4e-140 501.5 381 71.9
DCAR_028301 Daucus carota HOM05D020440 ORTHO05D177073 1.4e-54 218.4 145 82.8
DCAR_025080 Daucus carota HOM05D020440 ORTHO05D176877 3.4e-48 197.2 143 79.7
DCAR_024275 Daucus carota HOM05D017553 ORTHO05D006349 2.1e-34 151.4 478 29.9
DCAR_024114 Daucus carota HOM05D002069 ORTHO05D001421 6.9e-25 119.8 240 34.2
DCAR_022708 Daucus carota HOM05D010862 ORTHO05D010791 8.4e-23 112.8 148 43.2
DCAR_005060 Daucus carota HOM05D017553 ORTHO05D010791 9.3e-22 109.4 89 57.3
DCAR_001033 Daucus carota HOM05D017553 ORTHO05D175219 2.5e-19 101.3 92 55.4
Cc01_g06860 Coffea canephora HOM05D006374 ORTHO05D006349 1.4e-17 95.5 130 36.2
Nn4g22459 Nelumbo nucifera HOM05D006374 ORTHO05D006349 3.1e-17 94.4 123 39.0
MD14G1163400 Malus domestica HOM05D006374 ORTHO05D006349 1.2e-16 92.4 117 42.7
Solyc11g072220.2 Solanum lycopersicum HOM05D006374 ORTHO05D006349 2.6e-16 91.3 123 38.2
Sopen11g029890 Solanum pennellii HOM05D006374 ORTHO05D006349 2.6e-16 91.3 123 38.2
DCAR_011104 Daucus carota HOM05D010975 ORTHO05D010903 4.5e-16 90.5 127 44.9
Hund05647 Selenicereus undatus HOM05D006374 ORTHO05D006349 4.5e-16 90.5 129 36.4
DCAR_026222 Daucus carota HOM05D001045 ORTHO05D001542 5.9e-16 90.1 153 33.3
DCAR_002019 Daucus carota HOM05D020440 ORTHO05D177266 7.6e-16 89.7 198 31.8
Dinv11161 Davidia involucrata HOM05D006374 ORTHO05D006349 7.6e-16 89.7 123 38.2
Aqoxy5G04000 Aquilegia oxysepala HOM05D001292 ORTHO05D006349 1.3e-15 89.0 123 37.4
Peaxi162Scf00234g00413 Petunia axillaris HOM05D006374 ORTHO05D006349 2.2e-15 88.2 126 35.7
DCAR_005456 Daucus carota HOM05D014044 ORTHO05D006349 2.9e-15 87.8 163 28.2
Nitab4.5_0003471g0010 Nicotiana tabacum HOM05D006374 ORTHO05D006349 2.9e-15 87.8 161 33.5
PSO339G5603 Papaver somniferum HOM05D006374 ORTHO05D006349 2.9e-15 87.8 124 36.3
PGSC0003DMG400027413 Solanum tuberosum HOM05D006374 ORTHO05D006349 2.9e-15 87.8 123 36.6
MSTRG.20819 Avicennia marina HOM05D006374 ORTHO05D006349 5.0e-15 87.0 123 36.6
DCAR_029290 Daucus carota HOM05D014044 ORTHO05D006349 5.0e-15 87.0 261 25.3
HanXRQChr16g0497711 Helianthus annuus HOM05D006374 ORTHO05D006349 5.0e-15 87.0 124 36.3
DCAR_017413 Daucus carota HOM05D014044 ORTHO05D006349 8.5e-15 86.3 261 26.4
ECA232G1265 Erigeron canadensis HOM05D006374 ORTHO05D006349 1.4e-14 85.5 124 34.7
Nitab4.5_0000205g0050 Nicotiana tabacum HOM05D006374 ORTHO05D006349 1.4e-14 85.5 164 32.3
Oeu025935.3 Olea europaea HOM05D001292 ORTHO05D006349 1.9e-14 85.1 136 33.1
Phvul.009G168700 Phaseolus vulgaris HOM05D006374 ORTHO05D006349 1.9e-14 85.1 128 37.5
Psat5g141920 Pisum sativum HOM05D006374 ORTHO05D006349 1.9e-14 85.1 128 37.5
VMungo1309G0655 Vigna mungo HOM05D006374 ORTHO05D006349 1.9e-14 85.1 131 37.4
CAN.G328.5 Capsicum annuum HOM05D006374 ORTHO05D006349 3.2e-14 84.3 123 36.6
Cfa018891 Carpinus fangiana HOM05D006374 ORTHO05D006349 3.2e-14 84.3 125 36.8
Glyma.04G193100 Glycine max HOM05D006374 ORTHO05D006349 3.2e-14 84.3 123 39.0
Cpa.g.sc4.71 Carica papaya HOM05D006374 ORTHO05D006349 4.2e-14 84.0 141 32.6
Migut.D00697 Erythranthe guttata HOM05D006374 ORTHO05D006349 4.2e-14 84.0 123 34.1
Nitab4.5_0004577g0040 Nicotiana tabacum HOM05D006374 ORTHO05D006349 4.2e-14 84.0 123 35.0
RcHm_v2.0_Chr7g0191071 Rosa chinensis HOM05D006374 ORTHO05D006349 4.2e-14 84.0 123 36.6
EL10Ac3g05470 Beta vulgaris HOM05D006374 ORTHO05D006349 5.5e-14 83.6 137 34.3
CANSAT80G0307 Cannabis sativa HOM05D006374 ORTHO05D006349 5.5e-14 83.6 123 36.6
PSO339G4060 Papaver somniferum HOM05D006374 ORTHO05D006349 7.2e-14 83.2 116 38.8
SEGI_23287 Sequoiadendron giganteum HOM05D001292 ORTHO05D006349 7.2e-14 83.2 155 34.2
MSTRG.18477 Avicennia marina HOM05D006374 ORTHO05D006349 9.3e-14 82.8 123 34.1
Prupe.5G156800 Prunus persica HOM05D006374 ORTHO05D006349 9.3e-14 82.8 124 35.5
DCAR_032202 Daucus carota HOM05D022224 ORTHO05D012368 1.2e-13 82.4 42 85.7
Oeu032041.1 Olea europaea HOM05D001292 ORTHO05D006349 1.2e-13 82.4 121 36.4
Gohir.A07G051500 Gossypium hirsutum HOM05D006374 ORTHO05D006349 1.6e-13 82.0 124 34.7
Lsat_1_v5_gn_9_14500 Lactuca sativa HOM05D006374 ORTHO05D006349 1.6e-13 82.0 120 35.8
DCAR_030060 Daucus carota HOM05D014044 ORTHO05D015632 2.1e-13 81.6 291 23.0
FvH4_3g25530 Fragaria vesca HOM05D006374 ORTHO05D006349 2.1e-13 81.6 124 37.1
Gohir.D13G208100 Gossypium hirsutum HOM05D006374 ORTHO05D006349 2.1e-13 81.6 123 35.0
Gorai.013G237200 Gossypium raimondii HOM05D006374 ORTHO05D006349 2.1e-13 81.6 123 35.0
SEGI_20117 Sequoiadendron giganteum HOM05D001292 ORTHO05D006349 2.1e-13 81.6 155 33.5
Sopen02g012480 Solanum pennellii HOM05D006374 ORTHO05D006349 2.7e-13 81.3 166 28.9
TWI63G0087 Tripterygium wilfordii HOM05D006374 ORTHO05D006349 2.7e-13 81.3 126 33.3
DCAR_015986 Daucus carota HOM05D008184 ORTHO05D010791 3.6e-13 80.9 143 33.6
DCAR_018007 Daucus carota HOM05D001292 ORTHO05D006349 3.6e-13 80.9 143 33.6
Gohir.D07G055900 Gossypium hirsutum HOM05D006374 ORTHO05D006349 3.6e-13 80.9 124 34.7
Lsat_1_v5_gn_4_76860 Lactuca sativa HOM05D006374 ORTHO05D006349 3.6e-13 80.9 120 35.8
FAN08G0738 Fragaria x ananassa HOM05D006374 ORTHO05D006349 4.6e-13 80.5 123 34.1
FAN18G3707 Fragaria x ananassa HOM05D006374 ORTHO05D006349 4.6e-13 80.5 124 36.3
PGSC0003DMG401023161 Solanum tuberosum HOM05D006374 ORTHO05D006349 4.6e-13 80.5 123 34.1
FvH4_5g07530 Fragaria vesca HOM05D006374 ORTHO05D006349 6.1e-13 80.1 123 34.1
Gohir.A13G202800 Gossypium hirsutum HOM05D006374 ORTHO05D006349 6.1e-13 80.1 123 35.0
Medtr3g075090 Medicago truncatula HOM05D006374 ORTHO05D006349 7.9e-13 79.7 130 34.6
Eucgr.B00120 Eucalyptus grandis HOM05D006374 ORTHO05D006349 1.4e-12 79.0 124 33.1
DCAR_030104 Daucus carota HOM05D014044 ORTHO05D006349 2.3e-12 78.2 193 25.9
Duzib205G1366 Durio zibethinus HOM05D006374 ORTHO05D006349 2.3e-12 78.2 123 32.5
Lj1g0028093 Lotus japonicus HOM05D006374 ORTHO05D006349 2.3e-12 78.2 124 37.1
Manes.14G055266 Manihot esculenta HOM05D006374 ORTHO05D006349 2.3e-12 78.2 123 34.1
arahy.Tifrunner.gnm1.ann1.6C93RA Arachis hypogaea HOM05D006374 ORTHO05D006349 3.0e-12 77.8 127 35.4
Ca_16088_v3 Cicer arietinum L. HOM05D006374 ORTHO05D006349 3.0e-12 77.8 123 38.2
ClCG03G003510 Citrullus lanatus HOM05D006374 ORTHO05D006349 3.9e-12 77.4 126 32.5
arahy.Tifrunner.gnm1.ann1.EEZ80W Arachis hypogaea HOM05D006374 ORTHO05D006349 5.1e-12 77.0 123 35.8
FAN11G0071 Fragaria x ananassa HOM05D006374 ORTHO05D006349 5.1e-12 77.0 125 36.8
ATR0824G075 Amborella trichopoda HOM05D001292 ORTHO05D006349 6.7e-12 76.6 124 32.3
Migut.B01731 Erythranthe guttata HOM05D006374 ORTHO05D006349 6.7e-12 76.6 123 33.3
PSO384G0777 Papaver somniferum HOM05D006374 ORTHO05D006349 6.7e-12 76.6 111 36.0
Cc03_g12860 Coffea canephora HOM05D006374 ORTHO05D006349 1.1e-11 75.9 136 31.6
PSO384G4638 Papaver somniferum HOM05D006374 ORTHO05D006349 1.1e-11 75.9 110 37.3
Aa31LG4G17070 Aethionema arabicum HOM05D006374 ORTHO05D006349 1.5e-11 75.5 139 30.9
Gorai.001G059300 Gossypium raimondii HOM05D006374 ORTHO05D006349 2.5e-11 74.7 189 29.6
AL5G27890 Arabidopsis lyrata HOM05D006374 ORTHO05D006349 5.7e-11 73.6 124 33.9
Cc01_g06810 Coffea canephora HOM05D006374 ORTHO05D006349 5.7e-11 73.6 66 43.9
Sp5g13550 Schrenkiella parvula HOM05D006374 ORTHO05D006349 7.4e-11 73.2 124 33.9
AT3G48480 Arabidopsis thaliana HOM05D006374 ORTHO05D006349 1.3e-10 72.4 124 33.9
CARHR157240 Cardamine hirsuta HOM05D006374 ORTHO05D006349 1.3e-10 72.4 153 32.0
Hund23135 Selenicereus undatus HOM05D006374 ORTHO05D006349 1.7e-10 72.0 129 31.8
AUR62041753 Chenopodium quinoa HOM05D006374 ORTHO05D006349 2.2e-10 71.6 107 34.6
Thhalv10010584m.g Eutrema salsugineum HOM05D006374 ORTHO05D006349 2.8e-10 71.2 124 33.1
THA.LOC104798954 Tarenaya hassleriana HOM05D006374 ORTHO05D006349 3.7e-10 70.9 128 32.0
AUR62041397 Chenopodium quinoa HOM05D006374 ORTHO05D006349 6.3e-10 70.1 109 33.0
FAN25G0911 Fragaria x ananassa HOM05D006374 ORTHO05D006349 6.3e-10 70.1 110 39.1
AUR62026946 Chenopodium quinoa HOM05D006374 ORTHO05D006349 8.2e-10 69.7 115 32.2
Carub.0005s1466 Capsella rubella HOM05D006374 ORTHO05D006349 1.1e-09 69.3 124 32.3
EL10Ac4g07621 Beta vulgaris HOM05D006374 ORTHO05D006349 1.8e-09 68.6 140 28.6
BcaB02g10649 Brassica carinata HOM05D006374 ORTHO05D006349 3.1e-09 67.8 127 33.1
BcaC01g02345 Brassica carinata HOM05D006374 ORTHO05D006349 5.3e-09 67.0 124 32.3
A06p27690 Brassica napus HOM05D006374 ORTHO05D006349 6.9e-09 66.6 124 31.5
AUR62040664 Chenopodium quinoa HOM05D006374 ORTHO05D006349 6.9e-09 66.6 124 33.1
AUR62044358 Chenopodium quinoa HOM05D006374 ORTHO05D006349 6.9e-09 66.6 124 33.1
AUR62017054 Chenopodium quinoa HOM05D006374 ORTHO05D006349 1.5e-08 65.5 123 32.5
PGSC0003DMG402023161 Solanum tuberosum HOM05D006374 ORTHO05D006349 2.6e-08 64.7 59 44.1
arahy.Tifrunner.gnm1.ann1.RTUG1E Arachis hypogaea HOM05D006374 ORTHO05D006349 7.7e-08 63.2 63 46.0
Zm00001eb425970 Zea mays HOM05D000555 ORTHO05D000646 7.7e-08 63.2 59 45.8
DCAR_022722 Daucus carota HOM05D027780 ORTHO05D176388 1.3e-07 62.4 128 36.7
DCAR_024113 Daucus carota HOM05D006374 ORTHO05D006349 1.3e-07 62.4 69 43.5
SGA_v2.0_scaffold277G46663 Striga asiatica HOM05D006374 ORTHO05D006349 1.3e-07 62.4 123 30.9
Os04g0501600 Oryza sativa ssp. japonica HOM05D000555 ORTHO05D000646 2.9e-07 61.2 60 48.3
Rhsim02G0215600 Rhododendron simsii HOM05D000555 ORTHO05D000646 3.8e-07 60.8 38 63.2
BolC3t18904H Brassica oleracea HOM05D006374 ORTHO05D006349 6.5e-07 60.1 151 27.8
GSVIVG01035890001 Vitis vinifera HOM05D000555 ORTHO05D000646 8.5e-07 59.7 142 30.3
Zm00001eb078170 Zea mays HOM05D000555 ORTHO05D000646 8.5e-07 59.7 59 44.1
Lj9C494G11 Lonicera japonica HOM05D000555 ORTHO05D000646 1.1e-06 59.3 39 56.4
Pp3c9_9780 Physcomitrium patens HOM05D001292 ORTHO05D001202 1.1e-06 59.3 204 24.5
Pp3c9_9860 Physcomitrium patens HOM05D001292 ORTHO05D001202 1.1e-06 59.3 204 24.5
DCAR_022853 Daucus carota HOM05D000555 ORTHO05D000646 3.2e-06 57.8 41 53.7
ECA247G2489 Erigeron canadensis HOM05D000555 ORTHO05D000646 4.2e-06 57.4 56 48.2
Lalb_Chr23g0268251 Lupinus albus HOM05D000555 ORTHO05D000646 4.2e-06 57.4 36 63.9
TWI18G0954 Tripterygium wilfordii HOM05D006374 ORTHO05D006349 4.2e-06 57.4 66 36.4
FAN04G3207 Fragaria x ananassa HOM05D006374 ORTHO05D006349 7.2e-06 56.6 59 40.7
Glyma.04G061700 Glycine max HOM05D000555 ORTHO05D000646 9.4e-06 56.2 36 58.3
Lsat_1_v5_gn_3_22060 Lactuca sativa HOM05D000555 ORTHO05D000646 9.4e-06 56.2 40 52.5
Os12g0606900 Oryza sativa ssp. japonica HOM05D001292 ORTHO05D001202 9.4e-06 56.2 55 43.6


User provided reference genes

Program Settings