Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005473 Daucus carota HOM05D004353 ORTHO05D004989 2.4e-123 445.7 250 100.0
ECA248G0230 Erigeron canadensis HOM05D004353 ORTHO05D004989 1.1e-40 171.0 255 48.2
HanXRQChr10g0307981 Helianthus annuus HOM05D004353 ORTHO05D004989 2.4e-38 163.3 246 43.9
Hma1.2p1_0017F.1_g011670 Hydrangea macrophylla HOM05D004353 ORTHO05D004989 3.1e-38 162.9 249 49.0
RcHm_v2.0_Chr4g0406201 Rosa chinensis HOM05D004353 ORTHO05D004989 5.0e-36 155.6 198 51.5
Peaxi162Scf00008g03715 Petunia axillaris HOM05D004353 ORTHO05D004989 8.5e-36 154.8 242 43.4
Lsat_1_v5_gn_5_149741 Lactuca sativa HOM05D004353 ORTHO05D004989 1.4e-35 154.1 264 42.4
Nitab4.5_0000518g0010 Nicotiana tabacum HOM05D004353 ORTHO05D004989 1.4e-35 154.1 241 48.1
Nitab4.5_0000214g0170 Nicotiana tabacum HOM05D004353 ORTHO05D004989 2.5e-35 153.3 241 47.3
CAN.G162.60 Capsicum annuum HOM05D004353 ORTHO05D004989 3.2e-35 152.9 179 55.3
GSVIVG01038129001 Vitis vinifera HOM05D004353 ORTHO05D004989 3.2e-35 152.9 190 51.6
Oeu043896.1 Olea europaea HOM05D004353 ORTHO05D004989 5.5e-35 152.1 244 40.2
TAR633G2112 Trochodendron aralioides HOM05D004353 ORTHO05D004989 5.5e-35 152.1 244 44.7
Cc04_g05110 Coffea canephora HOM05D004353 ORTHO05D004989 7.2e-35 151.8 205 49.3
FAN07G2673 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.2e-34 151.0 199 52.3
FAN12G3936 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.6e-34 150.6 199 52.8
FAN12G4128 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.6e-34 150.6 199 52.8
FAN17G1422 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.6e-34 150.6 199 52.8
FAN22G0682 Fragaria x ananassa HOM05D004353 ORTHO05D004989 2.1e-34 150.2 197 50.8
FvH4_4g10550 Fragaria vesca HOM05D004353 ORTHO05D004989 3.6e-34 149.4 199 52.8
PGR031G1729 Punica granatum HOM05D004353 ORTHO05D004989 3.6e-34 149.4 205 51.2
PSO017G5600 Papaver somniferum HOM05D004353 ORTHO05D004989 7.9e-34 148.3 248 45.2
PSO675G4101 Papaver somniferum HOM05D004353 ORTHO05D004989 5.2e-33 145.6 248 45.2
QL10p053348 Quercus lobata HOM05D004353 ORTHO05D004989 8.8e-33 144.8 258 43.0
TAR362G0930 Trochodendron aralioides HOM05D004353 ORTHO05D004989 8.8e-33 144.8 241 44.0
Gorai.013G257700 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.6e-32 143.3 189 48.1
Gohir.A13G222400 Gossypium hirsutum HOM05D004353 ORTHO05D004989 4.4e-32 142.5 189 47.1
QL10p054510 Quercus lobata HOM05D004353 ORTHO05D004989 5.7e-32 142.1 258 42.2
Gohir.D10G228800 Gossypium hirsutum HOM05D004353 ORTHO05D004989 7.4e-32 141.7 189 48.1
Gorai.011G261300 Gossypium raimondii HOM05D004353 ORTHO05D004989 7.4e-32 141.7 189 48.1
Migut.M00919 Erythranthe guttata HOM05D004353 ORTHO05D004989 1.7e-31 140.6 249 43.4
MD08G1231200 Malus domestica HOM05D004353 ORTHO05D004989 1.7e-31 140.6 199 47.7
Solyc04g054460.3 Solanum lycopersicum HOM05D004353 ORTHO05D004989 1.7e-31 140.6 180 54.4
Sopen04g024280 Solanum pennellii HOM05D004353 ORTHO05D004989 1.7e-31 140.6 180 54.4
Eucgr.A01325 Eucalyptus grandis HOM05D004353 ORTHO05D004989 3.7e-31 139.4 215 45.6
Prupe.1G205800 Prunus persica HOM05D004353 ORTHO05D004989 1.4e-30 137.5 208 46.6
AT2G43630 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 5.3e-30 135.6 264 39.8
Sc05g0005560 Simmondsia chinensis HOM05D004353 ORTHO05D004989 5.3e-30 135.6 211 42.7
Thecc.09G282100 Theobroma cacao HOM05D004353 ORTHO05D004989 5.3e-30 135.6 219 42.0
MD15G1424100 Malus domestica HOM05D004353 ORTHO05D004989 4.5e-29 132.5 195 45.6
Cfa015265 Carpinus fangiana HOM05D004353 ORTHO05D004989 7.7e-29 131.7 257 37.7
AUR62025025 Chenopodium quinoa HOM05D004353 ORTHO05D004989 7.7e-29 131.7 237 40.9
Gorai.012G140500 Gossypium raimondii HOM05D004353 ORTHO05D004989 1.3e-28 131.0 169 50.9
AL4G42450 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 1.7e-28 130.6 263 38.0
Gohir.D13G227200 Gossypium hirsutum HOM05D004353 ORTHO05D004989 2.2e-28 130.2 180 49.4
Atru.chr6.1925 Acer truncatum HOM05D004353 ORTHO05D004989 5.0e-28 129.0 200 41.5
Prupe.1G570000 Prunus persica HOM05D004353 ORTHO05D004989 6.5e-28 128.6 250 43.2
MSTRG.16235 Avicennia marina HOM05D004353 ORTHO05D004989 1.1e-27 127.9 203 46.3
Thhalv10001554m.g Eutrema salsugineum HOM05D004353 ORTHO05D004989 1.5e-27 127.5 215 42.3
VMungo1215G1727 Vigna mungo HOM05D004353 ORTHO05D004989 1.5e-27 127.5 265 39.6
CiPaw.02G101000 Carya illinoinensis HOM05D004353 ORTHO05D004989 1.9e-27 127.1 260 40.8
ClCG03G006580 Citrullus lanatus HOM05D004353 ORTHO05D004989 2.5e-27 126.7 187 49.2
AUR62006505 Chenopodium quinoa HOM05D004353 ORTHO05D004989 4.2e-27 125.9 236 35.2
Glyma.07G165200 Glycine max HOM05D004353 ORTHO05D004989 5.5e-27 125.6 178 49.4
Potri.006G123800 Populus trichocarpa HOM05D004353 ORTHO05D004989 5.5e-27 125.6 178 47.2
BraA04t18750Z Brassica rapa HOM05D004353 ORTHO05D004989 7.2e-27 125.2 215 42.3
Carub.0004s2616 Capsella rubella HOM05D004353 ORTHO05D004989 7.2e-27 125.2 215 39.5
Glyma.09G118100 Glycine max HOM05D004353 ORTHO05D004989 9.4e-27 124.8 181 50.3
BcaB06g29332 Brassica carinata HOM05D004353 ORTHO05D004989 2.7e-26 123.2 259 39.8
CARHR138810 Cardamine hirsuta HOM05D004353 ORTHO05D004989 2.7e-26 123.2 253 36.0
Aa31LG1G25350 Aethionema arabicum HOM05D004353 ORTHO05D004989 3.6e-26 122.9 190 41.6
Sp4g25730 Schrenkiella parvula HOM05D004353 ORTHO05D004989 4.7e-26 122.5 216 42.1
Cpa.g.sc9.354 Carica papaya HOM05D004353 ORTHO05D004989 6.1e-26 122.1 248 38.7
Duzib168G0981 Durio zibethinus HOM05D004353 ORTHO05D004989 1.4e-25 120.9 219 35.2
BolC4t28561H Brassica oleracea HOM05D004353 ORTHO05D004989 1.8e-25 120.6 259 38.2
Sabra06G0098000 Salix brachista HOM05D004353 ORTHO05D004989 2.3e-25 120.2 176 44.3
COL.COLO4_19851 Corchorus olitorius HOM05D004353 ORTHO05D004989 3.0e-25 119.8 218 43.1
BcaC02g07160 Brassica carinata HOM05D004353 ORTHO05D004989 4.0e-25 119.4 259 37.8
Phvul.003G023800 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 8.8e-25 118.2 260 40.0
Aqoxy3G00280 Aquilegia oxysepala HOM05D004353 ORTHO05D004989 1.2e-24 117.9 198 41.4
C04p70590 Brassica napus HOM05D004353 ORTHO05D004989 1.2e-24 117.9 215 41.4
CANSAT54G2783 Cannabis sativa HOM05D004353 ORTHO05D004989 1.2e-24 117.9 186 46.8
A04p32910 Brassica napus HOM05D004353 ORTHO05D004989 3.3e-24 116.3 216 40.7
TWI63G0567 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 9.7e-24 114.8 258 36.4
ATR0743G161 Amborella trichopoda HOM05D004353 ORTHO05D004989 1.3e-23 114.4 187 42.8
THA.LOC104803988 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 1.7e-23 114.0 216 43.5
Ah.03g147060 Amaranthus hybridus HOM05D004353 ORTHO05D004989 6.3e-23 112.1 243 38.3
unitig_61.g26169 Utricularia gibba HOM05D004353 ORTHO05D004989 6.3e-23 112.1 194 39.7
arahy.Tifrunner.gnm1.ann1.ZXP0UV Arachis hypogaea HOM05D004353 ORTHO05D004989 1.4e-22 110.9 253 36.4
Ciclev10021938m.g Citrus clementina HOM05D004353 ORTHO05D004989 1.4e-22 110.9 174 39.7
THA.LOC104802322 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 2.4e-22 110.2 215 46.0
Manes.11G130500 Manihot esculenta HOM05D004353 ORTHO05D004989 7.0e-22 108.6 180 36.7
arahy.Tifrunner.gnm1.ann1.WL5XYL Arachis hypogaea HOM05D004353 ORTHO05D004989 9.1e-22 108.2 253 39.1
SalBow8G1390 Salvia bowleyana HOM05D004353 ORTHO05D004989 1.2e-21 107.8 254 41.7
Atru.chr4.1388 Acer truncatum HOM05D004353 ORTHO05D004989 1.6e-21 107.5 207 37.7
Sp5g03540 Schrenkiella parvula HOM05D004353 ORTHO05D004989 3.5e-21 106.3 269 37.9
PGSC0003DMG400005514 Solanum tuberosum HOM05D004353 ORTHO05D004989 3.5e-21 106.3 149 51.7
CsaV3_1G036770 Cucumis sativus L. HOM05D004353 ORTHO05D004989 4.5e-21 105.9 199 43.7
Duzib150G0228 Durio zibethinus HOM05D004353 ORTHO05D004989 7.7e-21 105.1 187 38.0
MBI08_g25559_MAGBIO Magnolia biondii HOM05D004353 ORTHO05D004989 2.9e-20 103.2 158 49.4
BcaC07g40471 Brassica carinata HOM05D004353 ORTHO05D004989 3.8e-20 102.8 201 38.8
Dinv40298 Davidia involucrata HOM05D004353 ORTHO05D004989 3.8e-20 102.8 178 39.9
EL10Ac6g15412 Beta vulgaris HOM05D004353 ORTHO05D004989 5.0e-20 102.4 229 40.6
Hund04296 Selenicereus undatus HOM05D004353 ORTHO05D004989 5.0e-20 102.4 190 38.4
Lj2g0015848 Lotus japonicus HOM05D004353 ORTHO05D004989 6.5e-20 102.1 189 40.7
MELO3C002758.2 Cucumis melo HOM05D004353 ORTHO05D004989 8.5e-20 101.7 198 44.9
RcHm_v2.0_Chr2g0115921 Rosa chinensis HOM05D004353 ORTHO05D004989 8.5e-20 101.7 157 49.0
Sed0011106 Sechium edule HOM05D004353 ORTHO05D004989 1.1e-19 101.3 202 45.5
Gorai.013G194600 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.5e-19 100.1 172 42.4
A09p51910 Brassica napus HOM05D004353 ORTHO05D004989 1.2e-18 97.8 187 41.7
BcaC07g40494 Brassica carinata HOM05D004353 ORTHO05D004989 1.6e-18 97.4 204 39.7
C08p34630 Brassica napus HOM05D004353 ORTHO05D004989 1.6e-18 97.4 204 39.7
BolC8t51065H Brassica oleracea HOM05D004353 ORTHO05D004989 1.6e-18 97.4 204 39.7
BraA09t40627Z Brassica rapa HOM05D004353 ORTHO05D004989 2.7e-18 96.7 187 41.2
Sed0022603 Sechium edule HOM05D004353 ORTHO05D004989 2.7e-18 96.7 187 40.1
SGA_v2.0_scaffold1G00163 Striga asiatica HOM05D004353 ORTHO05D004989 1.4e-17 94.4 222 36.0
Lalb_Chr02g0158251 Lupinus albus HOM05D004353 ORTHO05D004989 2.3e-17 93.6 201 44.3
Nitab4.5_0001095g0110 Nicotiana tabacum HOM05D004353 ORTHO05D004989 8.8e-17 91.7 107 47.7
TWI15G0091 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 1.5e-16 90.9 167 38.9
Atru.chr6.1923 Acer truncatum HOM05D004353 ORTHO05D004989 3.4e-16 89.7 119 40.3
MSTRG.19791 Avicennia marina HOM05D004353 ORTHO05D004989 3.4e-16 89.7 118 44.9
FAN19G0170 Fragaria x ananassa HOM05D004353 ORTHO05D004989 7.5e-16 88.6 229 32.3
Lalb_Chr10g0096191 Lupinus albus HOM05D004353 ORTHO05D004989 7.5e-16 88.6 241 36.5
Lalb_Chr21g0317861 Lupinus albus HOM05D004353 ORTHO05D004989 9.8e-16 88.2 184 41.3
Ca_17991_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 3.7e-15 86.3 181 38.1
Psat6g042920 Pisum sativum HOM05D004353 ORTHO05D004989 6.3e-15 85.5 242 32.2
Zm00001eb184150 Zea mays HOM05D004353 ORTHO05D004989 4.1e-14 82.8 241 35.3
Zm00001eb246630 Zea mays HOM05D004353 ORTHO05D004989 7.0e-14 82.0 253 28.5
AL5G41660 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 1.2e-13 81.3 224 35.3
Haze_01374 Corylus avellana HOM05D004353 ORTHO05D004989 1.2e-13 81.3 201 37.3
FvH4_1g21910 Fragaria vesca HOM05D004353 ORTHO05D004989 1.6e-13 80.9 154 41.6
Lalb_Chr22g0353411 Lupinus albus HOM05D004353 ORTHO05D004989 2.0e-13 80.5 196 36.2
Os02g0606000 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 5.9e-13 79.0 216 35.6
CDE05G3235 Ceratophyllum demersum HOM05D004353 ORTHO05D004989 1.7e-12 77.4 125 46.4
FAN28G0555 Fragaria x ananassa HOM05D004353 ORTHO05D004989 2.9e-12 76.6 226 34.5
Gorai.012G140700 Gossypium raimondii HOM05D004353 ORTHO05D004989 5.0e-12 75.9 104 39.4
AT3G59640 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 2.5e-11 73.6 224 34.8
Actinidia06605 Actinidia chinensis HOM05D004353 ORTHO05D004989 5.5e-11 72.4 191 39.8
Medtr1g030860 Medicago truncatula HOM05D004353 ORTHO05D004989 7.2e-11 72.0 178 33.7
FAN26G0137 Fragaria x ananassa HOM05D004353 ORTHO05D004989 9.5e-11 71.6 164 37.8
TPR.G36930 Trifolium pratense HOM05D004353 ORTHO05D004989 3.6e-10 69.7 167 35.9
Os04g0493300 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 4.0e-09 66.2 181 33.7
MD10G1168700 Malus domestica HOM05D004353 ORTHO05D004989 3.4e-08 63.2 53 56.6
Carub.0005s2635 Capsella rubella HOM05D004353 ORTHO05D004989 7.5e-08 62.0 159 39.0
Ca_02292_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 2.8e-07 60.1 114 33.3
Medtr6g012760 Medicago truncatula HOM05D004353 ORTHO05D004989 8.3e-07 58.5 238 29.8
Lj2g0004083 Lotus japonicus HOM05D004353 ORTHO05D004989 1.4e-06 57.8 119 50.4
C04p04620 Brassica napus HOM05D004353 ORTHO05D004989 2.4e-06 57.0 109 36.7


User provided reference genes

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