Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005467 Daucus carota HOM05D003040 ORTHO05D003443 6.9e-58 227.3 129 100.0
Potri.014G147000 Populus trichocarpa HOM05D003040 ORTHO05D003443 2.1e-14 82.8 118 47.5
vmacro00570 Vaccinium macrocarpon HOM05D003040 ORTHO05D003443 1.8e-13 79.7 124 46.8
Haze_11716 Corylus avellana HOM05D003040 ORTHO05D003443 6.8e-13 77.8 126 46.8
Rhsim09G0035800 Rhododendron simsii HOM05D003040 ORTHO05D003443 1.2e-12 77.0 120 45.8
Sabra02G0178100 Salix brachista HOM05D003040 ORTHO05D003443 3.4e-12 75.5 127 41.7
QL10p044472 Quercus lobata HOM05D003040 ORTHO05D003443 7.5e-12 74.3 125 43.2
TAR636G3649 Trochodendron aralioides HOM05D003040 ORTHO05D003443 7.5e-12 74.3 116 45.7
Actinidia32963 Actinidia chinensis HOM05D003040 ORTHO05D003443 2.2e-11 72.8 119 42.9
Potri.002G233400 Populus trichocarpa HOM05D003040 ORTHO05D003443 2.2e-11 72.8 130 39.2
Aqoxy2G04067 Aquilegia oxysepala HOM05D003040 ORTHO05D003443 3.7e-11 72.0 116 42.2
Dinv29107 Davidia involucrata HOM05D003040 ORTHO05D003443 3.7e-11 72.0 127 41.7
CiPaw.01G109100 Carya illinoinensis HOM05D003040 ORTHO05D003443 6.4e-11 71.2 117 44.4
COL.COLO4_05703 Corchorus olitorius HOM05D003040 ORTHO05D003443 6.4e-11 71.2 126 40.5
Dinv09885 Davidia involucrata HOM05D003040 ORTHO05D003443 8.3e-11 70.9 133 39.8
Gohir.A02G017900 Gossypium hirsutum HOM05D003040 ORTHO05D003443 1.4e-10 70.1 127 40.9
ATR0308G001 Amborella trichopoda HOM05D003040 ORTHO05D003443 3.2e-10 68.9 116 39.7
MD04G1244300 Malus domestica HOM05D003040 ORTHO05D003443 3.2e-10 68.9 121 41.3
BcaB08g36847 Brassica carinata HOM05D003040 ORTHO05D003443 4.1e-10 68.6 111 41.4
MELO3C010062.2 Cucumis melo HOM05D003040 ORTHO05D003443 4.1e-10 68.6 127 41.7
C09p60680 Brassica napus HOM05D003040 ORTHO05D003443 5.4e-10 68.2 113 41.6
BolC9t58899H Brassica oleracea HOM05D003040 ORTHO05D003443 5.4e-10 68.2 113 41.6
Duzib268G1117 Durio zibethinus HOM05D003040 ORTHO05D003443 5.4e-10 68.2 126 40.5
Gohir.D02G020100 Gossypium hirsutum HOM05D003040 ORTHO05D003443 5.4e-10 68.2 127 40.2
Gorai.005G025300 Gossypium raimondii HOM05D003040 ORTHO05D003443 5.4e-10 68.2 127 40.2
Lj3A380G19 Lonicera japonica HOM05D003040 ORTHO05D003443 5.4e-10 68.2 116 43.1
Thecc.04G192600 Theobroma cacao HOM05D003040 ORTHO05D003443 5.4e-10 68.2 127 38.6
Aa31LG11G13170 Aethionema arabicum HOM05D003040 ORTHO05D003443 7.0e-10 67.8 123 41.5
BcaC04g18873 Brassica carinata HOM05D003040 ORTHO05D003443 7.0e-10 67.8 116 40.5
ClCG03G010790 Citrullus lanatus HOM05D003040 ORTHO05D003443 1.2e-09 67.0 127 42.5
TWI75G0608 Tripterygium wilfordii HOM05D003040 ORTHO05D003443 1.2e-09 67.0 119 40.3
Migut.N00459 Erythranthe guttata HOM05D003040 ORTHO05D003443 1.6e-09 66.6 121 38.8
Thecc.05G199700 Theobroma cacao HOM05D003040 ORTHO05D003443 2.0e-09 66.2 116 37.9
Actinidia35925 Actinidia chinensis HOM05D003040 ORTHO05D003443 2.7e-09 65.9 117 43.6
Haze_04549 Corylus avellana HOM05D003040 ORTHO05D003443 2.7e-09 65.9 125 42.4
Duzib151G0919 Durio zibethinus HOM05D003040 ORTHO05D003443 2.7e-09 65.9 125 39.2
Manes.13G005800 Manihot esculenta HOM05D003040 ORTHO05D003443 2.7e-09 65.9 128 41.4
Nn1g09813 Nelumbo nucifera HOM05D003040 ORTHO05D003443 2.7e-09 65.9 116 41.4
A10p22710 Brassica napus HOM05D003040 ORTHO05D003443 3.5e-09 65.5 116 39.7
BraA10t44331Z Brassica rapa HOM05D003040 ORTHO05D003443 3.5e-09 65.5 116 39.7
BraA10t44334Z Brassica rapa HOM05D003040 ORTHO05D003443 3.5e-09 65.5 116 39.7
AUR62000315 Chenopodium quinoa HOM05D000001 ORTHO05D010091 3.5e-09 65.5 115 37.4
Eucgr.H01387 Eucalyptus grandis HOM05D003040 ORTHO05D003443 4.6e-09 65.1 135 35.6
Duzib106G1609 Durio zibethinus HOM05D003040 ORTHO05D003443 6.0e-09 64.7 126 37.3
Sc16g0010350 Simmondsia chinensis HOM05D003040 ORTHO05D003443 6.0e-09 64.7 114 37.7
MSTRG.24594 Avicennia marina HOM05D003040 ORTHO05D003443 7.8e-09 64.3 112 40.2
CARHR026960 Cardamine hirsuta HOM05D003040 ORTHO05D003443 7.8e-09 64.3 123 37.4
Glyma.08G259300 Glycine max HOM05D003040 ORTHO05D003443 7.8e-09 64.3 123 39.0
Hma1.2p1_0412F.1_g147250 Hydrangea macrophylla HOM05D003040 ORTHO05D003443 1.0e-08 63.9 122 36.9
Duzib128G0697 Durio zibethinus HOM05D003040 ORTHO05D003443 1.3e-08 63.5 124 37.1
Duzib268G1790 Durio zibethinus HOM05D003040 ORTHO05D003443 1.3e-08 63.5 126 39.7
Prupe.6G360900 Prunus persica HOM05D003040 ORTHO05D003443 1.3e-08 63.5 122 39.3
PGR031G3166 Punica granatum HOM05D003040 ORTHO05D003443 1.3e-08 63.5 121 37.2
PGR083G1221 Punica granatum HOM05D003040 ORTHO05D003443 1.3e-08 63.5 119 39.5
Cpa.g.c26337.4 Carica papaya HOM05D003040 ORTHO05D003443 2.3e-08 62.8 125 38.4
QL01p048572 Quercus lobata HOM05D003040 ORTHO05D003443 2.3e-08 62.8 116 40.5
TWI36G0037 Tripterygium wilfordii HOM05D003040 ORTHO05D003443 3.0e-08 62.4 119 41.2
Psat3g189120 Pisum sativum HOM05D003040 ORTHO05D003443 5.0e-08 61.6 130 37.7
GSVIVG01019115001 Vitis vinifera HOM05D003040 ORTHO05D003443 5.0e-08 61.6 116 40.5
BcaC01g06956 Brassica carinata HOM05D003040 ORTHO05D003443 6.6e-08 61.2 127 37.0
CAN.G710.53 Capsicum annuum HOM05D003040 ORTHO05D003443 6.6e-08 61.2 124 36.3
CARHR196740 Cardamine hirsuta HOM05D003040 ORTHO05D003443 6.6e-08 61.2 111 38.7
EL10Ac4g09973 Beta vulgaris HOM05D003040 ORTHO05D003443 8.6e-08 60.8 116 38.8
Lj1g0021745 Lotus japonicus HOM05D003040 ORTHO05D003443 8.6e-08 60.8 134 38.1
Lalb_Chr02g0144521 Lupinus albus HOM05D003040 ORTHO05D003443 8.6e-08 60.8 111 37.8
GSVIVG01031660001 Vitis vinifera HOM05D003040 ORTHO05D003443 8.6e-08 60.8 110 40.9
Thhalv10014939m.g Eutrema salsugineum HOM05D003040 ORTHO05D003443 1.1e-07 60.5 111 40.5
FAN14G2832 Fragaria x ananassa HOM05D003040 ORTHO05D003443 1.1e-07 60.5 125 36.8
SalBow1G6107 Salvia bowleyana HOM05D000001 ORTHO05D010091 1.1e-07 60.5 112 37.5
Hund07342 Selenicereus undatus HOM05D003040 ORTHO05D003443 1.1e-07 60.5 115 37.4
THA.LOC104820915 Tarenaya hassleriana HOM05D003040 ORTHO05D003443 1.1e-07 60.5 116 44.0
Dinv22709 Davidia involucrata HOM05D003040 ORTHO05D003443 1.5e-07 60.1 118 47.5
BraA07t28972Z Brassica rapa HOM05D003040 ORTHO05D003443 1.9e-07 59.7 111 37.8
Migut.F02119 Erythranthe guttata HOM05D003040 ORTHO05D003443 1.9e-07 59.7 116 38.8
RcHm_v2.0_Chr3g0447931 Rosa chinensis HOM05D003040 ORTHO05D003443 1.9e-07 59.7 122 39.3
BcaC01g01617 Brassica carinata HOM05D003040 ORTHO05D003443 2.5e-07 59.3 115 38.3
C02p08390 Brassica napus HOM05D003040 ORTHO05D003443 2.5e-07 59.3 115 38.3
C03p73720 Brassica napus HOM05D003040 ORTHO05D003443 2.5e-07 59.3 115 38.3
BolC3t19663H Brassica oleracea HOM05D003040 ORTHO05D003443 2.5e-07 59.3 115 38.3
CiPaw.07G079700 Carya illinoinensis HOM05D003040 ORTHO05D003443 2.5e-07 59.3 126 36.5
DCAR_027482 Daucus carota HOM05D003040 ORTHO05D003443 2.5e-07 59.3 67 52.2
FvH4_6g00540 Fragaria vesca HOM05D003040 ORTHO05D003443 2.5e-07 59.3 112 38.4
Lalb_Chr10g0092111 Lupinus albus HOM05D003040 ORTHO05D003443 2.5e-07 59.3 135 33.3
BraA02t05329Z Brassica rapa HOM05D003040 ORTHO05D003443 3.3e-07 58.9 111 39.6
Cfa008707 Carpinus fangiana HOM05D003040 ORTHO05D003443 3.3e-07 58.9 64 53.1
PSO357G0622 Papaver somniferum HOM05D003040 ORTHO05D003443 3.3e-07 58.9 114 38.6
CSS0033054 Camellia sinensis var. sinensis HOM05D003040 ORTHO05D003443 4.3e-07 58.5 54 59.3
Medtr7g021660 Medicago truncatula HOM05D003040 ORTHO05D003443 4.3e-07 58.5 131 37.4
Potri.013G086600 Populus trichocarpa HOM05D003040 ORTHO05D003443 4.3e-07 58.5 117 41.0
RcHm_v2.0_Chr4g0410351 Rosa chinensis HOM05D003040 ORTHO05D003443 4.3e-07 58.5 116 38.8
THA.LOC104802951 Tarenaya hassleriana HOM05D003040 ORTHO05D003443 4.3e-07 58.5 111 42.3
BcaC03g18495 Brassica carinata HOM05D003040 ORTHO05D003443 5.6e-07 58.2 111 36.9
BolC2t06757H Brassica oleracea HOM05D003040 ORTHO05D003443 5.6e-07 58.2 111 36.9
Ciclev10012906m.g Citrus clementina HOM05D003040 ORTHO05D003443 5.6e-07 58.2 70 51.4
HanXRQChr10g0293921 Helianthus annuus HOM05D003040 ORTHO05D003443 5.6e-07 58.2 115 39.1
Carub.0006s1469 Capsella rubella HOM05D003040 ORTHO05D003443 7.3e-07 57.8 111 38.7
PSO170G3622 Papaver somniferum HOM05D003040 ORTHO05D003443 7.3e-07 57.8 114 38.6
A07p11880 Brassica napus HOM05D003040 ORTHO05D003443 9.5e-07 57.4 111 36.9
Glyma.09G250900 Glycine max HOM05D003040 ORTHO05D003443 9.5e-07 57.4 119 34.5
Glyma.18G241600 Glycine max HOM05D003040 ORTHO05D003443 9.5e-07 57.4 119 34.5
Sp6g27670 Schrenkiella parvula HOM05D003040 ORTHO05D003443 9.5e-07 57.4 111 38.7
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 1.2e-06 57.0 122 36.1
Sp1g23600 Schrenkiella parvula HOM05D003040 ORTHO05D003443 1.2e-06 57.0 130 38.5
CsaV3_1G044570 Cucumis sativus L. HOM05D003040 ORTHO05D003443 1.6e-06 56.6 162 35.2
TPR.G2917 Trifolium pratense HOM05D003040 ORTHO05D003443 1.6e-06 56.6 123 37.4
MBI11_g07423_MAGBIO Magnolia biondii HOM05D003040 ORTHO05D003443 2.1e-06 56.2 116 37.9
Phvul.008G054500 Phaseolus vulgaris HOM05D003040 ORTHO05D003443 2.1e-06 56.2 119 36.1
FvH4_4g12280 Fragaria vesca HOM05D003040 ORTHO05D003443 2.8e-06 55.8 132 34.8
FAN12G1098 Fragaria x ananassa HOM05D003040 ORTHO05D003443 2.8e-06 55.8 132 34.8
FAN12G3503 Fragaria x ananassa HOM05D003040 ORTHO05D003443 2.8e-06 55.8 132 34.8
Sed0008495 Sechium edule HOM05D003040 ORTHO05D003443 2.8e-06 55.8 77 44.2
Sopen09g036360 Solanum pennellii HOM05D003040 ORTHO05D003443 2.8e-06 55.8 113 39.8
arahy.Tifrunner.gnm1.ann1.D458E1 Arachis hypogaea HOM05D003040 ORTHO05D003443 3.6e-06 55.5 126 35.7
arahy.Tifrunner.gnm1.ann1.EIQ915 Arachis hypogaea HOM05D003040 ORTHO05D003443 3.6e-06 55.5 126 35.7
ECA232G2830 Erigeron canadensis HOM05D003040 ORTHO05D003443 3.6e-06 55.5 136 35.3
FAN22G2136 Fragaria x ananassa HOM05D003040 ORTHO05D003443 3.6e-06 55.5 132 34.1
Oeu007221.1 Olea europaea HOM05D003040 ORTHO05D003443 3.6e-06 55.5 131 33.6
PSO675G7126 Papaver somniferum HOM05D003040 ORTHO05D003443 3.6e-06 55.5 121 45.5
Solyc09g098425.1 Solanum lycopersicum HOM05D003040 ORTHO05D003443 3.6e-06 55.5 113 39.8
VMungo1383G1123 Vigna mungo HOM05D003040 ORTHO05D003443 3.6e-06 55.5 113 34.5
BcaB03g13990 Brassica carinata HOM05D003040 ORTHO05D003443 4.7e-06 55.1 117 35.9
FAN07G1530 Fragaria x ananassa HOM05D003040 ORTHO05D003443 4.7e-06 55.1 132 34.1
Potri.019G053300 Populus trichocarpa HOM05D003040 ORTHO05D003443 4.7e-06 55.1 115 33.9
Sc25g0005640 Simmondsia chinensis HOM05D003040 ORTHO05D003443 4.7e-06 55.1 120 35.8
AUR62020938 Chenopodium quinoa HOM05D003040 ORTHO05D003443 6.2e-06 54.7 140 36.4
Manes.12G006100 Manihot esculenta HOM05D003040 ORTHO05D003443 6.2e-06 54.7 114 37.7
PSO017G5902 Papaver somniferum HOM05D003040 ORTHO05D003443 6.2e-06 54.7 119 35.3
Phvul.008G018000 Phaseolus vulgaris HOM05D003040 ORTHO05D003443 6.2e-06 54.7 114 33.3
Sed0022991 Sechium edule HOM05D003040 ORTHO05D003443 6.2e-06 54.7 122 31.1
CANSAT78G2083 Cannabis sativa HOM05D003040 ORTHO05D003443 8.1e-06 54.3 55 56.4
Prupe.1G177300 Prunus persica HOM05D003040 ORTHO05D003443 8.1e-06 54.3 123 35.0
TAR365G0675 Trochodendron aralioides HOM05D003040 ORTHO05D003443 8.1e-06 54.3 65 60.0


User provided reference genes

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