Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005451 Daucus carota HOM05D007607 ORTHO05D009603 4.1e-61 238.0 136 100.0
Dinv18311 Davidia involucrata HOM05D007607 ORTHO05D009603 1.2e-15 87.0 128 53.9
Cfa015274 Carpinus fangiana HOM05D007607 ORTHO05D009603 1.3e-14 83.6 133 45.9
Ciclev10022842m.g Citrus clementina HOM05D007607 ORTHO05D009603 3.8e-14 82.0 132 47.0
QL10p057723 Quercus lobata HOM05D007607 ORTHO05D009603 1.4e-13 80.1 130 47.7
Manes.05G131900 Manihot esculenta HOM05D007607 ORTHO05D009603 1.9e-13 79.7 104 53.8
QL10p057428 Quercus lobata HOM05D007607 ORTHO05D009603 3.2e-13 79.0 130 46.2
Actinidia28975 Actinidia chinensis HOM05D007607 ORTHO05D009603 4.2e-13 78.6 129 43.4
Haze_01353 Corylus avellana HOM05D007607 ORTHO05D009603 9.4e-13 77.4 132 45.5
Duzib212G0637 Durio zibethinus HOM05D007607 ORTHO05D009603 1.2e-12 77.0 105 52.4
Gohir.A10G145500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 2.1e-12 76.3 131 49.6
Potri.013G128700 Populus trichocarpa HOM05D007607 ORTHO05D009603 2.1e-12 76.3 108 47.2
Sed0020904 Sechium edule HOM05D007607 ORTHO05D009603 6.1e-12 74.7 130 41.5
Gohir.D10G121500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 7.9e-12 74.3 131 48.1
Gorai.011G133600 Gossypium raimondii HOM05D007607 ORTHO05D009603 7.9e-12 74.3 131 48.1
Thecc.04G162800 Theobroma cacao HOM05D007607 ORTHO05D009603 7.9e-12 74.3 131 45.0
CiPaw.02G100000 Carya illinoinensis HOM05D007607 ORTHO05D009603 2.3e-11 72.8 130 43.8
ClCG11G013470 Citrullus lanatus HOM05D007607 ORTHO05D009603 2.3e-11 72.8 89 56.2
Atru.chr4.1510 Acer truncatum HOM05D007607 ORTHO05D009603 3.9e-11 72.0 82 57.3
FvH4_1g00500 Fragaria vesca HOM05D007607 ORTHO05D009603 5.1e-11 71.6 137 51.1
Atru.chr4.1481 Acer truncatum HOM05D007607 ORTHO05D009603 6.7e-11 71.2 82 57.3
SalBow6G6796 Salvia bowleyana HOM05D007607 ORTHO05D009603 6.7e-11 71.2 96 53.1
CiPaw.01G169900 Carya illinoinensis HOM05D007607 ORTHO05D009603 8.8e-11 70.9 131 46.6
Migut.N03053 Erythranthe guttata HOM05D007607 ORTHO05D009603 8.8e-11 70.9 107 53.3
TWI15G0968 Tripterygium wilfordii HOM05D007607 ORTHO05D009603 8.8e-11 70.9 134 45.5
Lsat_1_v5_gn_8_9141 Lactuca sativa HOM05D007607 ORTHO05D009603 1.1e-10 70.5 120 45.8
Peaxi162Scf00883g00099 Petunia axillaris HOM05D007607 ORTHO05D009603 1.1e-10 70.5 131 46.6
RhsimUnG0015300 Rhododendron simsii HOM05D007607 ORTHO05D009603 1.1e-10 70.5 125 47.2
Prupe.7G267000 Prunus persica HOM05D007607 ORTHO05D009603 1.5e-10 70.1 82 59.8
Lj4g0023803 Lotus japonicus HOM05D007607 ORTHO05D009603 2.0e-10 69.7 77 59.7
PGR142G0203 Punica granatum HOM05D007607 ORTHO05D009603 2.0e-10 69.7 79 55.7
CsaV3_5G030090 Cucumis sativus L. HOM05D007607 ORTHO05D009603 3.3e-10 68.9 85 56.5
RcHm_v2.0_Chr2g0085131 Rosa chinensis HOM05D007607 ORTHO05D009603 3.3e-10 68.9 122 52.5
MSTRG.22043 Avicennia marina HOM05D007607 ORTHO05D009603 4.4e-10 68.6 103 49.5
MSTRG.24562 Avicennia marina HOM05D007607 ORTHO05D009603 4.4e-10 68.6 128 47.7
GSVIVG01038189001 Vitis vinifera HOM05D007607 ORTHO05D009603 4.4e-10 68.6 133 44.4
CSS0037895 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 7.4e-10 67.8 110 50.9
MD02G1004100 Malus domestica HOM05D007607 ORTHO05D009603 7.4e-10 67.8 109 46.8
Rhsim02G0085800 Rhododendron simsii HOM05D007607 ORTHO05D009603 9.7e-10 67.4 107 48.6
arahy.Tifrunner.gnm1.ann1.RJI6AK Arachis hypogaea HOM05D007607 ORTHO05D009603 1.3e-09 67.0 81 56.8
CSS0042213 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 1.7e-09 66.6 110 50.0
CAN.G1237.5 Capsicum annuum HOM05D007607 ORTHO05D009603 1.7e-09 66.6 135 43.0
MELO3C011848.2 Cucumis melo HOM05D007607 ORTHO05D009603 1.7e-09 66.6 103 49.5
MD15G1147800 Malus domestica HOM05D007607 ORTHO05D009603 1.7e-09 66.6 86 58.1
PSO017G0391 Papaver somniferum HOM05D007607 ORTHO05D009603 1.7e-09 66.6 83 49.4
Lalb_Chr16g0384371 Lupinus albus HOM05D007607 ORTHO05D009603 2.2e-09 66.2 110 41.8
PSO675G5570 Papaver somniferum HOM05D007607 ORTHO05D009603 2.2e-09 66.2 83 49.4
HanXRQChr02g0059081 Helianthus annuus HOM05D007607 ORTHO05D009603 2.8e-09 65.9 130 48.5
Aa31LG7G5390 Aethionema arabicum HOM05D007607 ORTHO05D009603 3.7e-09 65.5 115 40.9
unitig_22.g5705 Utricularia gibba HOM05D007607 ORTHO05D009603 3.7e-09 65.5 93 55.9
Ca_18631_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 4.8e-09 65.1 76 48.7
Eucgr.H00285 Eucalyptus grandis HOM05D007607 ORTHO05D009603 4.8e-09 65.1 84 57.1
THA.LOC104813690 Tarenaya hassleriana HOM05D007607 ORTHO05D009603 4.8e-09 65.1 82 50.0
CANSAT56G1551 Cannabis sativa HOM05D007607 ORTHO05D009603 6.3e-09 64.7 137 39.4
Nitab4.5_0000575g0080 Nicotiana tabacum HOM05D007607 ORTHO05D009603 6.3e-09 64.7 113 48.7
Sc13g0006620 Simmondsia chinensis HOM05D007607 ORTHO05D009603 6.3e-09 64.7 113 38.9
EL10Ac3g06110 Beta vulgaris HOM05D007607 ORTHO05D009603 1.1e-08 63.9 90 50.0
ECA233G0487 Erigeron canadensis HOM05D007607 ORTHO05D009603 1.1e-08 63.9 70 50.0
Cc03_g14540 Coffea canephora HOM05D007607 ORTHO05D009603 1.4e-08 63.5 139 41.7
AUR62002416 Chenopodium quinoa HOM05D007607 ORTHO05D009603 7.0e-08 61.2 91 42.9
Nitab4.5_0008331g0020 Nicotiana tabacum HOM05D001883 ORTHO05D002184 7.0e-08 61.2 82 54.9
TAR362G0213 Trochodendron aralioides HOM05D007607 ORTHO05D009603 1.2e-07 60.5 133 42.9
BcaC06g34863 Brassica carinata HOM05D007607 ORTHO05D009603 2.0e-07 59.7 82 46.3
BolC7t42778H Brassica oleracea HOM05D007607 ORTHO05D009603 2.0e-07 59.7 82 46.3
CARHR021860 Cardamine hirsuta HOM05D007607 ORTHO05D009603 2.0e-07 59.7 78 52.6
VMungo0251G2348 Vigna mungo HOM05D007607 ORTHO05D009603 2.0e-07 59.7 85 44.7
C05p20400 Brassica napus HOM05D007607 ORTHO05D009603 5.9e-07 58.2 128 38.3
Cpa.g.sc343.4 Carica papaya HOM05D007607 ORTHO05D009603 5.9e-07 58.2 123 47.2
AL1G34640 Arabidopsis lyrata HOM05D007607 ORTHO05D009603 7.7e-07 57.8 76 53.9
Solyc12g019550.2 Solanum lycopersicum HOM05D007607 ORTHO05D009603 7.7e-07 57.8 103 45.6
Psat7g119360 Pisum sativum HOM05D007607 ORTHO05D009603 1.0e-06 57.4 75 52.0
Sopen12g009810 Solanum pennellii HOM05D007607 ORTHO05D009603 1.0e-06 57.4 103 45.6
A07p15130 Brassica napus HOM05D007607 ORTHO05D009603 1.3e-06 57.0 83 44.6
AUR62023773 Chenopodium quinoa HOM05D007607 ORTHO05D009603 1.7e-06 56.6 93 49.5
Glyma.02G138600 Glycine max HOM05D007607 ORTHO05D009603 1.7e-06 56.6 77 44.2
MBI10_g16327_MAGBIO Magnolia biondii HOM05D007607 ORTHO05D009603 1.7e-06 56.6 101 40.6
AT1G21500 Arabidopsis thaliana HOM05D007607 ORTHO05D009603 2.2e-06 56.2 76 52.6
Carub.0001s2092 Capsella rubella HOM05D007607 ORTHO05D009603 2.2e-06 56.2 75 49.3
Glyma.07G206400 Glycine max HOM05D007607 ORTHO05D009603 2.2e-06 56.2 77 45.5
TPR.G23536 Trifolium pratense HOM05D007607 ORTHO05D009603 2.2e-06 56.2 100 44.0
BcaB07g32146 Brassica carinata HOM05D007607 ORTHO05D009603 2.9e-06 55.8 83 48.2
BcaC05g26059 Brassica carinata HOM05D007607 ORTHO05D009603 2.9e-06 55.8 128 39.8
C07p22190 Brassica napus HOM05D007607 ORTHO05D009603 2.9e-06 55.8 82 45.1
BolC5t30734H Brassica oleracea HOM05D007607 ORTHO05D009603 2.9e-06 55.8 128 39.8
Sp1g19030 Schrenkiella parvula HOM05D007607 ORTHO05D009603 2.9e-06 55.8 119 42.0
BraA06t24849Z Brassica rapa HOM05D007607 ORTHO05D009603 3.8e-06 55.5 127 38.6
PGSC0003DMG400029159 Solanum tuberosum HOM05D007607 ORTHO05D009603 3.8e-06 55.5 131 42.0
BcaB03g14267 Brassica carinata HOM05D007607 ORTHO05D009603 8.5e-06 54.3 82 42.7


User provided reference genes

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