Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 1.8e-111 406.0 214 100.0
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 2.7e-51 206.1 207 55.1
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 8.8e-50 201.1 196 56.1
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 2.6e-49 199.5 191 58.1
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 2.6e-49 199.5 185 59.5
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.1e-47 194.1 198 55.6
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.1e-47 194.1 198 55.6
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 1.1e-47 194.1 194 56.7
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 5.4e-47 191.8 198 53.5
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 5.4e-47 191.8 202 51.5
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 5.4e-47 191.8 215 50.7
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 7.0e-47 191.4 207 54.1
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 2.7e-46 189.5 185 52.4
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 3.8e-45 185.7 194 54.6
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 3.8e-45 185.7 200 52.0
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 5.0e-45 185.3 207 52.2
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 6.6e-45 184.9 153 64.7
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 1.1e-44 184.1 208 51.9
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.5e-44 183.7 206 49.5
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.9e-44 183.3 207 49.3
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 2.5e-44 183.0 204 55.9
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 7.3e-44 181.4 160 61.9
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 2.1e-43 179.9 144 62.5
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 2.1e-43 179.9 208 49.0
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 2.1e-43 179.9 206 51.5
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 3.6e-43 179.1 136 66.2
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 6.1e-43 178.3 143 63.6
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 8.0e-43 177.9 198 53.0
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 1.0e-42 177.6 153 58.8
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 1.4e-42 177.2 161 60.9
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 3.0e-42 176.0 167 58.1
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 3.0e-42 176.0 155 63.2
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 5.2e-42 175.3 147 61.2
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 5.2e-42 175.3 214 46.7
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 5.2e-42 175.3 150 61.3
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 1.2e-41 174.1 122 70.5
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 1.2e-41 174.1 150 60.7
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 1.2e-41 174.1 163 57.7
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 2.0e-41 173.3 167 57.5
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 2.6e-41 172.9 208 52.9
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 3.4e-41 172.6 137 63.5
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 5.7e-41 171.8 171 56.1
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 1.3e-40 170.6 164 56.7
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 4.9e-40 168.7 158 58.2
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 4.9e-40 168.7 209 47.8
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 1.1e-39 167.5 162 53.1
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 1.4e-39 167.2 158 55.7
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.4e-39 167.2 164 54.9
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 2.4e-39 166.4 166 53.0
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.2e-39 166.0 183 53.0
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 1.2e-38 164.1 172 55.2
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 2.7e-38 162.9 157 54.8
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 2.7e-38 162.9 164 56.7
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 5.9e-38 161.8 118 62.7
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 7.8e-38 161.4 165 55.8
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 7.8e-38 161.4 180 54.4
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 1.0e-37 161.0 165 55.8
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 1.3e-37 160.6 117 66.7
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 8.6e-37 157.9 163 55.2
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 1.9e-36 156.8 146 57.5
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 7.3e-36 154.8 205 47.3
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 7.3e-36 154.8 190 43.2
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.2e-35 154.1 192 49.5
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 2.1e-35 153.3 174 52.3
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 2.1e-35 153.3 225 45.3
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 2.8e-35 152.9 144 52.1
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 3.6e-35 152.5 188 43.1
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 1.8e-34 150.2 159 50.9
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 3.1e-34 149.4 195 46.7
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 5.2e-34 148.7 157 49.0
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 5.8e-33 145.2 95 75.8
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 1.7e-32 143.7 155 51.0
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 4.9e-32 142.1 150 55.3
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 4.9e-32 142.1 177 45.8
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 2.4e-31 139.8 262 38.9
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 7.0e-31 138.3 127 55.9
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 2.3e-29 133.3 124 54.8
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 2.3e-26 123.2 200 41.5
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.3e-24 117.5 130 44.6
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.7e-24 117.1 130 43.8
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 2.9e-24 116.3 191 37.7
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.9e-23 113.6 129 41.9
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 1.9e-23 113.6 128 41.4
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 3.2e-23 112.8 131 43.5
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 3.2e-23 112.8 126 40.5
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 5.4e-23 112.1 129 40.3
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 9.2e-23 111.3 126 42.1
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 2.7e-22 109.8 126 41.3
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 4.6e-22 109.0 130 40.8
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 4.6e-22 109.0 129 40.3
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 6.0e-22 108.6 126 39.7
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 6.0e-22 108.6 217 34.1
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 6.0e-22 108.6 126 42.1
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 7.8e-22 108.2 157 35.0
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.0e-21 107.8 118 39.0
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 1.0e-21 107.8 214 33.2
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.3e-21 107.5 155 36.1
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 1.3e-21 107.5 164 32.9
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 3.0e-21 106.3 126 37.3
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 3.0e-21 106.3 129 38.8
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 3.9e-21 105.9 127 37.8
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 6.6e-21 105.1 150 34.7
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 8.6e-21 104.8 125 36.8
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 8.6e-21 104.8 125 41.6
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 8.6e-21 104.8 119 41.2
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 2.5e-20 103.2 148 39.9
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 2.5e-20 103.2 118 39.0
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 3.3e-20 102.8 126 38.9
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 3.3e-20 102.8 155 36.1
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 3.3e-20 102.8 120 38.3
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 3.3e-20 102.8 127 39.4
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 3.3e-20 102.8 129 38.8
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 5.6e-20 102.1 129 38.8
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 1.2e-19 100.9 179 30.7
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 1.2e-19 100.9 126 37.3
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 2.1e-19 100.1 126 38.9
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 2.8e-19 99.8 124 37.9
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 4.7e-19 99.0 144 33.3
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 4.7e-19 99.0 215 28.8
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 6.2e-19 98.6 121 37.2
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 6.2e-19 98.6 69 68.1
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 1.1e-18 97.8 132 37.9
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 1.1e-18 97.8 156 32.1
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 1.4e-18 97.4 122 37.7
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 1.4e-18 97.4 156 32.1
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 1.8e-18 97.1 155 32.3
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 3.1e-18 96.3 153 33.3
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 3.1e-18 96.3 149 32.9
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 4.0e-18 95.9 122 37.7
Gohir.D02G109300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 5.2e-18 95.5 121 47.9
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 1.2e-17 94.4 122 37.7
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.5e-17 94.0 149 32.2
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 2.6e-17 93.2 175 30.3
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 4.4e-17 92.4 177 26.6
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 5.8e-17 92.0 124 33.9
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 1.3e-16 90.9 124 33.9
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 2.2e-16 90.1 114 38.6
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 2.2e-16 90.1 153 31.4
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 2.9e-16 89.7 124 37.9
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 4.9e-16 89.0 153 32.7
Eucgr.A00011 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.4e-15 87.4 133 44.4
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 3.2e-15 86.3 164 29.9
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 3.2e-15 86.3 115 38.3
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 4.1e-15 85.9 92 42.4
Eucgr.G00294 Eucalyptus grandis HOM05D003796 ORTHO05D004486 4.1e-15 85.9 133 43.6
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 2.1e-14 83.6 131 32.1
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 2.1e-14 83.6 83 55.4
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 1.0e-13 81.3 120 35.0
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 1.7e-13 80.5 86 40.7
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 6.6e-13 78.6 89 41.6
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 8.6e-13 78.2 89 41.6
Nitab4.5_0003575g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.5e-12 77.4 119 42.9
Phvul.005G006900 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 3.6e-11 72.8 77 51.9
Sed0002366 Sechium edule HOM05D003796 ORTHO05D004486 6.2e-11 72.0 71 56.3
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 8.1e-11 71.6 180 26.7
Psat5g230640 Pisum sativum HOM05D003796 ORTHO05D004486 1.4e-10 70.9 69 53.6
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 3.1e-10 69.7 156 26.3
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 3.1e-10 69.7 122 32.0
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 5.2e-10 68.9 129 33.3
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 6.9e-10 68.6 77 41.6
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.0e-09 67.0 126 30.2
ClCG01G012270 Citrullus lanatus HOM05D003796 ORTHO05D022376 3.4e-09 66.2 40 75.0
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 2.9e-08 63.2 145 30.3
arahy.Tifrunner.gnm1.ann1.14GY92 Arachis hypogaea HOM05D003796 ORTHO05D004486 3.8e-08 62.8 95 44.2
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 3.5e-06 56.2 124 32.3


User provided reference genes

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